Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38997 Brassica carinata HOM05D005591 ORTHO05D007131 7.6e-192 673.7 348 100.0
C08p19710 Brassica napus HOM05D005591 ORTHO05D007131 7.6e-192 673.7 348 100.0
BolC8t49608H Brassica oleracea HOM05D005591 ORTHO05D007131 1.7e-191 672.5 348 99.7
Sp1g17610 Schrenkiella parvula HOM05D005591 ORTHO05D007131 7.3e-179 630.6 351 94.6
AT1G19800 Arabidopsis thaliana HOM05D005591 ORTHO05D007131 5.3e-177 624.4 351 92.9
AL1G32520 Arabidopsis lyrata HOM05D005591 ORTHO05D007131 9.0e-177 623.6 351 92.9
BcaB03g12900 Brassica carinata HOM05D005591 ORTHO05D007131 7.6e-176 620.5 348 93.4
Carub.0001s1933 Capsella rubella HOM05D005591 ORTHO05D007131 2.2e-175 619.0 353 92.4
BraA06t24698Z Brassica rapa HOM05D005591 ORTHO05D007131 2.7e-173 612.1 354 92.4
BolC5t30530H Brassica oleracea HOM05D005591 ORTHO05D007131 2.3e-172 609.0 355 92.4
CARHR020310 Cardamine hirsuta HOM05D005591 ORTHO05D007131 2.5e-171 605.5 355 90.7
C05p18230 Brassica napus HOM05D005591 ORTHO05D007131 7.4e-171 604.0 355 91.8
Thhalv10008071m.g Eutrema salsugineum HOM05D005591 ORTHO05D007131 1.3e-170 603.2 352 91.2
A06p15920 Brassica napus HOM05D005591 ORTHO05D007131 5.8e-168 594.3 354 91.0
Aa31LG7G4330 Aethionema arabicum HOM05D005591 ORTHO05D007131 4.6e-157 558.1 348 83.3
THA.LOC104827705 Tarenaya hassleriana HOM05D005591 ORTHO05D007131 5.3e-153 544.7 351 82.1
BcaB07g31994 Brassica carinata HOM05D005591 ORTHO05D007131 2.8e-146 522.3 355 82.0
Gorai.011G147400 Gossypium raimondii HOM05D005591 ORTHO05D007131 2.3e-132 476.1 323 76.5
Peaxi162Scf00673g00002 Petunia axillaris HOM05D005591 ORTHO05D007131 5.2e-132 474.9 331 74.3
Ciclev10020911m.g Citrus clementina HOM05D005591 ORTHO05D007131 2.0e-131 473.0 301 80.1
Duzib212G0264 Durio zibethinus HOM05D005591 ORTHO05D007131 3.3e-131 472.2 323 76.5
Nitab4.5_0000368g0340 Nicotiana tabacum HOM05D005591 ORTHO05D007131 3.3e-131 472.2 331 74.3
CiPaw.01G109900 Carya illinoinensis HOM05D005591 ORTHO05D007131 4.4e-131 471.9 318 76.1
Nitab4.5_0006072g0030 Nicotiana tabacum HOM05D005591 ORTHO05D007131 4.4e-131 471.9 331 74.6
QL05p063015 Quercus lobata HOM05D005591 ORTHO05D007131 2.2e-130 469.5 297 80.5
Dinv27163 Davidia involucrata HOM05D005591 ORTHO05D007131 3.7e-130 468.8 302 79.8
Thecc.04G188000 Theobroma cacao HOM05D005591 ORTHO05D007131 4.8e-130 468.4 323 74.9
TWI60G1035 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 1.8e-129 466.5 337 71.2
Gorai.006G226400 Gossypium raimondii HOM05D005591 ORTHO05D007131 2.4e-129 466.1 339 72.0
PGSC0003DMG402024734 Solanum tuberosum HOM05D005591 ORTHO05D007131 2.4e-129 466.1 331 73.7
CSS0046220 Camellia sinensis var. sinensis HOM05D005591 ORTHO05D007131 3.1e-129 465.7 320 74.7
Solyc01g100250.3 Solanum lycopersicum HOM05D005591 ORTHO05D007131 7.0e-129 464.5 331 72.8
CAN.G1648.2 Capsicum annuum HOM05D005591 ORTHO05D007131 9.1e-129 464.2 326 75.2
Lj2P1154T29 Lonicera japonica HOM05D005591 ORTHO05D007131 1.2e-128 463.8 302 77.5
Sabra02G0178800 Salix brachista HOM05D005591 ORTHO05D007131 2.0e-128 463.0 320 76.2
TWI34G1086 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 2.0e-128 463.0 352 69.3
Hma1.2p1_0349F.1_g132330 Hydrangea macrophylla HOM05D005591 ORTHO05D007131 3.5e-128 462.2 315 74.6
MSTRG.18314 Avicennia marina HOM05D005591 ORTHO05D007131 7.7e-128 461.1 302 78.5
Gohir.A09G209100 Gossypium hirsutum HOM05D005591 ORTHO05D007131 7.7e-128 461.1 318 74.8
Gohir.D09G202500 Gossypium hirsutum HOM05D005591 ORTHO05D007131 7.7e-128 461.1 339 71.7
PGR083G2576 Punica granatum HOM05D005591 ORTHO05D007131 1.7e-127 459.9 301 78.1
arahy.Tifrunner.gnm1.ann1.8VB164 Arachis hypogaea HOM05D005591 ORTHO05D007131 2.2e-127 459.5 298 77.2
arahy.Tifrunner.gnm1.ann1.ZABD6C Arachis hypogaea HOM05D005591 ORTHO05D007131 2.2e-127 459.5 298 77.2
Potri.002G234400 Populus trichocarpa HOM05D005591 ORTHO05D007131 2.2e-127 459.5 320 75.6
Glyma.20G208100 Glycine max HOM05D005591 ORTHO05D007131 5.0e-127 458.4 332 72.3
Gohir.A10G133200 Gossypium hirsutum HOM05D005591 ORTHO05D007131 3.2e-126 455.7 290 80.3
VMungo0720G0134 Vigna mungo HOM05D005591 ORTHO05D007131 3.2e-126 455.7 318 73.6
SalBow4G1598 Salvia bowleyana HOM05D005591 ORTHO05D007131 4.2e-126 455.3 349 69.9
Actinidia35920 Actinidia chinensis HOM05D005591 ORTHO05D007131 5.5e-126 454.9 318 74.5
EL10Ac9g21576 Beta vulgaris HOM05D005591 ORTHO05D007131 9.4e-126 454.1 306 77.1
SalBow4G1474 Salvia bowleyana HOM05D005591 ORTHO05D007131 1.2e-125 453.8 348 69.8
Phvul.008G142801 Phaseolus vulgaris HOM05D005591 ORTHO05D007131 1.6e-125 453.4 302 76.2
TAR375G0642 Trochodendron aralioides HOM05D005591 ORTHO05D007131 2.1e-125 453.0 324 72.8
Psat5g221840 Pisum sativum HOM05D005591 ORTHO05D007131 2.7e-125 452.6 302 75.8
Medtr3g005100 Medicago truncatula HOM05D005591 ORTHO05D007131 4.7e-125 451.8 302 75.8
TPR.G25529 Trifolium pratense HOM05D005591 ORTHO05D007131 6.1e-125 451.4 302 75.5
Glyma.10G181900 Glycine max HOM05D005591 ORTHO05D007131 1.8e-124 449.9 302 75.5
TPR.G37202 Trifolium pratense HOM05D005591 ORTHO05D007131 2.3e-124 449.5 302 75.2
AUR62013219 Chenopodium quinoa HOM05D005591 ORTHO05D007131 3.0e-124 449.1 306 75.8
Ca_26812_v3 Cicer arietinum L. HOM05D005591 ORTHO05D007131 4.0e-124 448.7 302 75.2
AUR62010234 Chenopodium quinoa HOM05D005591 ORTHO05D007131 5.2e-124 448.4 305 76.1
Lalb_Chr12g0209371 Lupinus albus HOM05D005591 ORTHO05D007131 6.8e-124 448.0 305 75.1
Lj3g0022648 Lotus japonicus HOM05D005591 ORTHO05D007131 1.5e-123 446.8 319 72.4
Lalb_Chr12g0205911 Lupinus albus HOM05D005591 ORTHO05D007131 1.5e-123 446.8 302 74.5
Manes.16G070000 Manihot esculenta HOM05D005591 ORTHO05D007131 1.5e-123 446.8 306 75.2
CsaV3_6G003160 Cucumis sativus L. HOM05D005591 ORTHO05D007131 5.7e-123 444.9 300 76.0
Aqoxy5G02725 Aquilegia oxysepala HOM05D005591 ORTHO05D007131 2.2e-122 443.0 301 76.4
ClCG08G003960 Citrullus lanatus HOM05D005591 ORTHO05D007131 2.8e-122 442.6 299 75.3
MELO3C011502.2 Cucumis melo HOM05D005591 ORTHO05D007131 2.8e-122 442.6 318 73.0
Sed0000259 Sechium edule HOM05D005591 ORTHO05D007131 4.8e-122 441.8 298 75.8
ClCG00G002040 Citrullus lanatus HOM05D005591 ORTHO05D007131 9.1e-121 437.6 297 75.4
COL.COLO4_08690 Corchorus olitorius HOM05D005591 ORTHO05D007131 1.6e-120 436.8 318 72.6
Nn3g18591 Nelumbo nucifera HOM05D005591 ORTHO05D007131 1.0e-119 434.1 318 71.1
MBI07_g20439_MAGBIO Magnolia biondii HOM05D005591 ORTHO05D007131 2.5e-118 429.5 299 72.9
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 8.0e-117 424.5 293 74.4
Gohir.D10G133600 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.8e-116 423.3 323 69.7
SGA_v2.0_scaffold90G27691 Striga asiatica HOM05D005591 ORTHO05D007131 2.0e-115 419.9 294 74.5
ATR0681G262 Amborella trichopoda HOM05D005591 ORTHO05D007131 2.6e-115 419.5 296 74.3
Lsat_1_v5_gn_1_5881 Lactuca sativa HOM05D005591 ORTHO05D007131 5.7e-115 418.3 287 75.3
Atru.chr7.136 Acer truncatum HOM05D005591 ORTHO05D007131 2.8e-114 416.0 350 62.3
Cc11_g03530 Coffea canephora HOM05D005591 ORTHO05D007131 1.2e-112 410.6 299 72.2
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 1.6e-112 410.2 272 74.6
Duzib151G0749 Durio zibethinus HOM05D005591 ORTHO05D007131 2.7e-112 409.5 242 86.0
Haze_12970 Corylus avellana HOM05D005591 ORTHO05D007131 3.5e-112 409.1 299 71.9
Oeu061431.3 Olea europaea HOM05D005591 ORTHO05D007131 4.5e-112 408.7 302 71.2
Sopen01g043760 Solanum pennellii HOM05D005591 ORTHO05D007131 1.0e-111 407.5 295 71.5
Eucgr.E02433 Eucalyptus grandis HOM05D005591 ORTHO05D007131 1.3e-111 407.1 288 73.6
Cfa014468 Carpinus fangiana HOM05D005591 ORTHO05D007131 1.5e-110 403.7 299 71.6
Haze_05998 Corylus avellana HOM05D005591 ORTHO05D007131 1.9e-110 403.3 306 69.6
FAN16G2920 Fragaria x ananassa HOM05D005591 ORTHO05D007131 3.3e-110 402.5 317 65.3
RcHm_v2.0_Chr5g0027591 Rosa chinensis HOM05D005591 ORTHO05D007131 4.3e-110 402.1 315 65.4
FAN11G3688 Fragaria x ananassa HOM05D005591 ORTHO05D007131 5.6e-110 401.7 317 65.0
FvH4_3g16560 Fragaria vesca HOM05D005591 ORTHO05D007131 7.3e-110 401.4 317 65.0
MD05G1209200 Malus domestica HOM05D005591 ORTHO05D007131 7.3e-110 401.4 297 70.4
Hund00109 Selenicereus undatus HOM05D005591 ORTHO05D007131 9.5e-110 401.0 306 68.6
GSVIVG01031642001 Vitis vinifera HOM05D005591 ORTHO05D007131 1.2e-109 400.6 318 67.0
CANSAT78G0984 Cannabis sativa HOM05D005591 ORTHO05D007131 3.6e-109 399.1 303 69.3
CAN.G1273.6 Capsicum annuum HOM05D005591 ORTHO05D007131 1.0e-108 397.5 325 65.8
FAN21G2901 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.8e-108 396.7 317 65.0
Sc08g0001750 Simmondsia chinensis HOM05D005591 ORTHO05D007131 2.3e-108 396.4 347 63.4
PSO063G3984 Papaver somniferum HOM05D005591 ORTHO05D007131 8.9e-108 394.4 301 68.1
MD10G1195600 Malus domestica HOM05D005591 ORTHO05D007131 1.5e-107 393.7 306 67.3
ECA232G4773 Erigeron canadensis HOM05D005591 ORTHO05D007131 2.0e-107 393.3 299 67.9
PSO339G5872 Papaver somniferum HOM05D005591 ORTHO05D007131 2.6e-107 392.9 301 67.8
Prupe.4G148300 Prunus persica HOM05D005591 ORTHO05D007131 9.8e-107 391.0 315 64.8
HanXRQChr10g0315741 Helianthus annuus HOM05D005591 ORTHO05D007131 1.8e-105 386.7 291 69.1
Migut.D00413 Erythranthe guttata HOM05D005591 ORTHO05D007131 4.6e-104 382.1 308 67.2
SEGI_17332 Sequoiadendron giganteum HOM05D005591 ORTHO05D007131 1.0e-103 380.9 286 69.6
Os04g0553000 Oryza sativa ssp. japonica HOM05D005591 ORTHO05D007131 1.3e-103 380.6 258 73.3
SMO367G0743 Selaginella moellendorffii HOM05D005591 ORTHO05D007131 2.3e-103 379.8 255 74.5
Zm00001eb074560 Zea mays HOM05D005591 ORTHO05D007131 2.5e-102 376.3 257 72.8
Pp3c1_16480 Physcomitrium patens HOM05D005591 ORTHO05D007131 2.8e-101 372.9 294 65.6
Mapoly0204s0010 Marchantia polymorpha HOM05D005591 ORTHO05D007131 1.0e-100 370.9 302 63.6
FAN25G3010 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.8e-100 370.2 317 62.5
CDE02G1973 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 3.1e-100 369.4 354 58.2
Rhsim02G0070200 Rhododendron simsii HOM05D005591 ORTHO05D007131 3.1e-100 369.4 315 64.8
CBR_g24384 Chara braunii HOM05D005591 ORTHO05D007131 4.9e-98 362.1 296 63.2
AagrBONN_evm.TU.Sc2ySwM_117.3947 Anthoceros agrestis HOM05D005591 ORTHO05D007131 4.1e-97 359.0 241 77.2
Medtr3g008040 Medicago truncatula HOM05D005591 ORTHO05D007131 2.9e-90 336.3 279 65.6
Cre06.g268200 Chlamydomonas reinhardtii HOM05D005591 ORTHO05D007131 1.1e-86 324.3 289 58.8
PRCOL_00005194 Prasinoderma coloniale HOM05D005591 ORTHO05D007131 2.8e-85 319.7 255 62.7
HPP92_028331 Vanilla planifolia HOM05D005591 ORTHO05D007131 1.3e-82 310.8 268 63.8
Cpa.g.sc8.310 Carica papaya HOM05D005591 ORTHO05D007131 3.2e-81 306.2 177 88.1
MCO01G348 Micromonas commoda HOM05D005591 ORTHO05D007131 1.1e-73 281.2 270 54.8
CDE11G0925 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 1.7e-66 257.3 191 72.3
vmacro15598 Vaccinium macrocarpon HOM05D005591 ORTHO05D007131 1.0e-63 248.1 291 52.2
unitig_22.g5460 Utricularia gibba HOM05D005591 ORTHO05D007131 1.5e-62 244.2 177 69.5
CBR_g4088 Chara braunii HOM05D005591 ORTHO05D007131 2.0e-51 207.2 146 71.2
BraA08t34904Z Brassica rapa HOM05D005591 ORTHO05D011946 1.8e-47 194.1 121 85.1
unitig_22.g5461 Utricularia gibba HOM05D005591 ORTHO05D007131 1.6e-40 171.0 103 86.4
CBR_g4089 Chara braunii HOM05D005591 ORTHO05D007131 2.1e-40 170.6 114 70.2
DCAR_018469 Daucus carota HOM05D005591 ORTHO05D007131 5.3e-36 156.0 103 75.7
DCAR_018470 Daucus carota HOM05D005591 ORTHO05D007131 5.3e-36 156.0 103 75.7
BcaC05g25857 Brassica carinata HOM05D005591 ORTHO05D007131 1.1e-25 121.7 63 100.0
Actinidia29179 Actinidia chinensis HOM05D005591 ORTHO05D007131 3.1e-20 103.6 60 88.3
Ca_28569_v3 Cicer arietinum L. HOM05D005591 ORTHO05D149412 5.3e-20 102.8 211 31.3
Cc01_g18470 Coffea canephora HOM05D005591 ORTHO05D007131 8.0e-08 62.4 45 57.8


User provided reference genes

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