Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 2.5e-105 385.6 213 100.0
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 2.5e-105 385.6 213 100.0
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 5.6e-105 384.4 213 99.1
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 3.8e-101 371.7 213 94.4
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 1.9e-100 369.4 213 93.0
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 2.4e-92 342.4 227 87.7
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 1.6e-91 339.7 226 85.4
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 4.9e-85 318.2 220 80.5
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 6.9e-79 297.7 228 77.2
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 6.9e-79 297.7 228 77.2
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 1.5e-78 296.6 226 77.4
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 1.5e-78 296.6 226 77.4
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 1.5e-78 296.6 226 77.4
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 2.6e-78 295.8 226 75.7
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 7.2e-76 287.7 220 76.4
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 1.0e-74 283.9 227 74.4
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 4.8e-72 275.0 220 75.5
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 5.3e-71 271.6 220 73.6
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 1.9e-68 263.1 228 68.9
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 1.6e-54 216.9 227 58.1
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 2.0e-54 216.5 226 56.6
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 1.0e-53 214.2 227 58.6
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 2.2e-53 213.0 231 56.3
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 4.2e-52 208.8 229 57.2
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 9.4e-52 207.6 226 55.8
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 9.4e-52 207.6 220 58.2
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 1.2e-51 207.2 227 56.4
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 1.2e-51 207.2 229 56.8
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.6e-51 206.8 227 58.1
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 2.1e-51 206.5 220 57.7
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 3.6e-51 205.7 227 57.3
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 4.7e-51 205.3 226 55.3
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 6.1e-51 204.9 227 58.1
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 8.0e-51 204.5 227 57.3
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 8.0e-51 204.5 221 57.5
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 1.8e-50 203.4 221 57.9
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 4.0e-50 202.2 232 56.9
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 4.0e-50 202.2 230 55.2
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 1.1e-49 200.7 224 55.4
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 1.1e-49 200.7 224 55.4
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 4.4e-49 198.7 222 56.3
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 9.7e-49 197.6 222 55.9
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.3e-48 197.2 222 55.4
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 2.2e-48 196.4 203 57.6
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 3.7e-48 195.7 214 58.9
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 4.8e-48 195.3 250 51.2
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 8.2e-48 194.5 230 57.0
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 1.4e-47 193.7 219 55.3
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 1.4e-47 193.7 231 55.0
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 1.8e-47 193.4 234 54.7
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 4.1e-47 192.2 208 55.3
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 7.0e-47 191.4 226 53.5
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 1.2e-46 190.7 267 48.7
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 1.2e-46 190.7 226 54.4
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 2.0e-46 189.9 223 54.3
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.0e-46 189.9 231 53.7
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 2.7e-46 189.5 208 54.3
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 5.9e-46 188.3 211 56.4
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 1.0e-45 187.6 214 56.1
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 1.7e-45 186.8 215 55.3
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 1.7e-45 186.8 221 54.3
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 5.0e-45 185.3 219 57.1
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 5.0e-45 185.3 215 54.0
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 6.5e-45 184.9 235 51.5
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 1.1e-44 184.1 222 54.5
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 1.9e-44 183.3 215 55.8
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 1.9e-44 183.3 223 57.8
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 4.2e-44 182.2 207 56.5
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 5.5e-44 181.8 221 52.5
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 5.5e-44 181.8 222 51.8
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 7.2e-44 181.4 228 52.6
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 1.2e-43 180.6 218 52.8
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 2.7e-43 179.5 232 51.3
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 4.7e-43 178.7 220 55.0
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 4.7e-43 178.7 222 55.0
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 6.1e-43 178.3 228 51.3
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 6.1e-43 178.3 210 53.8
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 1.0e-42 177.6 228 51.3
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 1.8e-42 176.8 220 52.7
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 5.2e-42 175.3 204 54.4
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 5.2e-42 175.3 216 49.1
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 8.8e-42 174.5 223 48.9
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 1.5e-41 173.7 224 51.8
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 3.4e-41 172.6 203 51.2
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 4.4e-41 172.2 211 55.0
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 4.4e-41 172.2 213 52.1
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 7.5e-41 171.4 213 53.5
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 7.5e-41 171.4 227 50.7
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 1.3e-40 170.6 229 52.4
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 1.3e-40 170.6 214 52.3
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 2.8e-40 169.5 217 53.0
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 3.7e-40 169.1 237 47.7
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 3.7e-40 169.1 226 50.9
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 4.8e-40 168.7 227 50.7
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 6.3e-40 168.3 204 54.4
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 3.1e-39 166.0 214 50.9
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 5.4e-39 165.2 248 46.8
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 3.5e-38 162.5 228 49.1
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 5.0e-37 158.7 212 50.0
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 6.5e-37 158.3 253 43.9
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 1.5e-36 157.1 201 50.2
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 3.2e-36 156.0 225 47.1
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.2e-35 154.1 222 47.3
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 1.4e-34 150.6 226 46.9
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 1.5e-33 147.1 214 47.7
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 2.0e-33 146.7 260 43.1
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 2.0e-33 146.7 260 43.1
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 3.4e-33 146.0 218 47.7
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 3.4e-33 146.0 217 48.4
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 7.5e-33 144.8 325 36.9
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 1.1e-31 141.0 219 48.9
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 1.1e-31 141.0 227 45.8
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 3.5e-30 136.0 213 43.7
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 7.7e-30 134.8 182 51.1
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 7.7e-30 134.8 182 51.1
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 1.3e-29 134.0 176 48.3
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.3e-29 134.0 211 47.4
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.3e-29 134.0 211 47.4
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 8.6e-29 131.3 178 48.9
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 7.3e-28 128.3 206 45.6
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 1.2e-25 120.9 207 45.9
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 1.2e-25 120.9 205 44.9
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 1.7e-24 117.1 140 51.4
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 1.6e-22 110.5 204 39.7
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 2.0e-22 110.2 213 39.9
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 5.0e-21 105.5 96 59.4
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 8.6e-21 104.8 205 37.6
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 8.6e-21 104.8 164 45.7
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 2.1e-19 100.1 147 47.6
BcaB03g13258 Brassica carinata HOM05D004799 ORTHO05D005500 3.6e-19 99.4 92 67.4
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 1.8e-18 97.1 160 45.6
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 1.5e-17 94.0 237 34.6
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 4.4e-17 92.4 313 33.2
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 2.9e-16 89.7 139 47.5
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 2.4e-15 86.7 52 84.6
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 2.4e-15 86.7 52 84.6
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 7.8e-14 81.6 71 57.7
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 3.0e-13 79.7 124 43.5
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 1.2e-11 74.3 158 39.9
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 2.9e-08 63.2 76 48.7
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 8.3e-08 61.6 40 70.0
Pp3c4_27250 Physcomitrium patens HOM05D004799 ORTHO05D005500 1.4e-07 60.8 140 36.4
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 2.4e-07 60.1 63 60.3
Lj5A252G43 Lonicera japonica HOM05D012292 ORTHO05D012234 3.2e-07 59.7 70 45.7
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 5.4e-07 58.9 42 71.4
SEGI_00858 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 7.1e-07 58.5 117 41.9
CSS0018254 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.2e-06 57.8 42 71.4
Ah.13g066130 Amaranthus hybridus HOM05D004799 ORTHO05D005500 2.1e-06 57.0 63 52.4
BolC8t50896H Brassica oleracea HOM05D014273 ORTHO05D041832 7.8e-06 55.1 40 65.0
Cre06.g279250 Chlamydomonas reinhardtii HOM05D004799 ORTHO05D005500 7.8e-06 55.1 191 28.8


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