Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38269 Brassica carinata HOM05D002888 ORTHO05D013752 4.1e-162 574.7 296 100.0
BraA08t34012Z Brassica rapa HOM05D002888 ORTHO05D013752 2.0e-145 519.2 315 86.7
A08p20560 Brassica napus HOM05D002888 ORTHO05D013752 5.9e-145 517.7 296 90.2
BcaB03g12525 Brassica carinata HOM05D002888 ORTHO05D013752 5.9e-137 491.1 296 83.1
C08p10160 Brassica napus HOM05D002888 ORTHO05D013752 4.1e-130 468.4 296 85.5
BolC8t48695H Brassica oleracea HOM05D002888 ORTHO05D013752 4.1e-130 468.4 296 85.5
Sp2g28450 Schrenkiella parvula HOM05D002888 ORTHO05D013752 3.2e-106 389.0 293 67.9
AL8G42940 Arabidopsis lyrata HOM05D002888 ORTHO05D013752 8.6e-104 380.9 293 65.2
Carub.0002s0123 Capsella rubella HOM05D002888 ORTHO05D013752 8.6e-104 380.9 296 66.2
AT5G65370 Arabidopsis thaliana HOM05D002888 ORTHO05D013752 1.5e-103 380.2 293 65.9
Thhalv10005617m.g Eutrema salsugineum HOM05D002888 ORTHO05D013752 2.1e-102 376.3 293 64.5
BcaC03g18331 Brassica carinata HOM05D002888 ORTHO05D013752 2.3e-96 356.3 293 63.8
A02p43910 Brassica napus HOM05D002888 ORTHO05D013752 2.3e-96 356.3 293 64.2
BraA02t09314Z Brassica rapa HOM05D002888 ORTHO05D013752 2.3e-96 356.3 293 64.2
C02p64060 Brassica napus HOM05D002888 ORTHO05D013752 3.4e-92 342.4 283 63.6
AL6G20910 Arabidopsis lyrata HOM05D002888 ORTHO05D003321 3.8e-51 206.1 302 41.1
Sp6g33040 Schrenkiella parvula HOM05D002888 ORTHO05D003321 5.1e-48 195.7 296 40.5
THA.LOC104798791 Tarenaya hassleriana HOM05D002888 ORTHO05D003321 4.8e-46 189.1 294 37.8
Thhalv10013869m.g Eutrema salsugineum HOM05D002888 ORTHO05D003321 6.3e-46 188.7 297 39.1
A10p27190 Brassica napus HOM05D002888 ORTHO05D003321 9.1e-45 184.9 296 39.2
BraA10t44769Z Brassica rapa HOM05D002888 ORTHO05D003321 9.1e-45 184.9 296 39.2
Aa31LG3G16770 Aethionema arabicum HOM05D002888 ORTHO05D003321 1.2e-44 184.5 297 38.7
CARHR202890 Cardamine hirsuta HOM05D002888 ORTHO05D003321 2.6e-44 183.3 297 39.4
BcaC04g19306 Brassica carinata HOM05D002888 ORTHO05D003321 3.4e-44 183.0 296 38.2
C09p67000 Brassica napus HOM05D002888 ORTHO05D003321 1.7e-43 180.6 296 37.8
BolC9t59473H Brassica oleracea HOM05D002888 ORTHO05D003321 1.7e-43 180.6 296 37.8
AT5G10410 Arabidopsis thaliana HOM05D002888 ORTHO05D003321 3.8e-43 179.5 304 37.8
Carub.0006s0888 Capsella rubella HOM05D002888 ORTHO05D003321 8.5e-43 178.3 297 38.7
BcaB08g37110 Brassica carinata HOM05D002888 ORTHO05D003321 1.9e-42 177.2 297 39.1
Aa31LG3G16760 Aethionema arabicum HOM05D002888 ORTHO05D003321 3.0e-40 169.9 297 38.7
THA.LOC104801687 Tarenaya hassleriana HOM05D002888 ORTHO05D003321 3.9e-40 169.5 302 35.8
CARHR279330 Cardamine hirsuta HOM05D002888 ORTHO05D013752 1.7e-35 154.1 115 64.3
Cpa.g.sc55.58 Carica papaya HOM05D002888 ORTHO05D003321 2.0e-31 140.6 307 31.9
CARHR279340 Cardamine hirsuta HOM05D002888 ORTHO05D003321 3.5e-28 129.8 109 56.9
Carub.0007s0207 Capsella rubella HOM05D002888 ORTHO05D003321 4.5e-28 129.4 301 30.6
Gohir.A10G087400 Gossypium hirsutum HOM05D002888 ORTHO05D003321 4.5e-28 129.4 299 31.4
Duzib187G0880 Durio zibethinus HOM05D002888 ORTHO05D003321 7.7e-28 128.6 309 32.4
QL06p047786 Quercus lobata HOM05D002888 ORTHO05D003321 7.7e-28 128.6 303 30.4
AT4G40080 Arabidopsis thaliana HOM05D002888 ORTHO05D003321 1.0e-27 128.3 300 30.0
Ciclev10025941m.g Citrus clementina HOM05D002888 ORTHO05D003321 1.7e-27 127.5 304 31.2
Gohir.D10G100800 Gossypium hirsutum HOM05D002888 ORTHO05D003321 2.2e-27 127.1 299 30.4
Duzib264G0538 Durio zibethinus HOM05D002888 ORTHO05D003321 2.9e-27 126.7 307 31.6
AL7G12440 Arabidopsis lyrata HOM05D002888 ORTHO05D003321 6.5e-27 125.6 300 30.0
Gorai.011G110500 Gossypium raimondii HOM05D002888 ORTHO05D003321 6.5e-27 125.6 299 30.1
Cc07_g14430 Coffea canephora HOM05D002888 ORTHO05D003321 8.5e-27 125.2 306 30.7
Manes.12G129001 Manihot esculenta HOM05D002888 ORTHO05D003321 1.1e-26 124.8 305 30.8
Duzib147G0504 Durio zibethinus HOM05D002888 ORTHO05D003321 3.2e-26 123.2 305 30.2
TWI53G0860 Tripterygium wilfordii HOM05D002888 ORTHO05D003321 4.2e-26 122.9 309 32.0
Aa31LG6G15130 Aethionema arabicum HOM05D002888 ORTHO05D003321 2.1e-25 120.6 302 29.5
Haze_15043 Corylus avellana HOM05D002888 ORTHO05D003321 2.1e-25 120.6 305 30.2
ClCG10G008340 Citrullus lanatus HOM05D002888 ORTHO05D003321 2.7e-25 120.2 299 28.1
Cfa004368 Carpinus fangiana HOM05D002888 ORTHO05D003321 1.0e-24 118.2 304 29.9
CsaV3_4G009090 Cucumis sativus L. HOM05D002888 ORTHO05D003321 1.0e-24 118.2 277 29.6
MELO3C019004.2 Cucumis melo HOM05D002888 ORTHO05D003321 1.8e-24 117.5 300 29.3
Sp7g35770 Schrenkiella parvula HOM05D002888 ORTHO05D003321 1.8e-24 117.5 308 30.2
RcHm_v2.0_Chr2g0112101 Rosa chinensis HOM05D002888 ORTHO05D003321 3.0e-24 116.7 300 28.0
A01p01010 Brassica napus HOM05D002888 ORTHO05D003321 5.2e-24 115.9 303 28.7
BraA01t00099Z Brassica rapa HOM05D002888 ORTHO05D003321 5.2e-24 115.9 303 28.7
CiPaw.02G022400 Carya illinoinensis HOM05D002888 ORTHO05D003321 5.2e-24 115.9 303 29.0
Atru.chr3.1322 Acer truncatum HOM05D002888 ORTHO05D003321 8.8e-24 115.2 280 29.3
Thhalv10025543m.g Eutrema salsugineum HOM05D002888 ORTHO05D003321 8.8e-24 115.2 298 28.9
Thecc.01G093800 Theobroma cacao HOM05D002888 ORTHO05D003321 1.2e-23 114.8 303 29.7
C01p01130 Brassica napus HOM05D002888 ORTHO05D003321 1.5e-23 114.4 303 28.1
BolC1t00111H Brassica oleracea HOM05D002888 ORTHO05D003321 1.5e-23 114.4 303 28.1
Gohir.A11G051000 Gossypium hirsutum HOM05D002888 ORTHO05D003321 1.5e-23 114.4 304 28.9
TPR.G30527 Trifolium pratense HOM05D000542 ORTHO05D003321 2.0e-23 114.0 302 29.1
CiPaw.01G048400 Carya illinoinensis HOM05D002888 ORTHO05D003321 2.6e-23 113.6 294 28.2
Psat5g090920 Pisum sativum HOM05D002888 ORTHO05D003321 3.4e-23 113.2 303 29.0
CSS0026892 Camellia sinensis var. sinensis HOM05D002888 ORTHO05D003321 4.4e-23 112.8 302 29.5
BcaNung00940 Brassica carinata HOM05D002888 ORTHO05D003321 5.7e-23 112.5 303 27.7
Medtr3g086670 Medicago truncatula HOM05D002888 ORTHO05D003321 7.5e-23 112.1 301 28.6
Oeu031107.1 Olea europaea HOM05D002888 ORTHO05D003321 7.5e-23 112.1 303 28.4
BcaNung00942 Brassica carinata HOM05D002888 ORTHO05D003321 9.8e-23 111.7 306 27.8
Hma1.2p1_0045F.1_g026590 Hydrangea macrophylla HOM05D002888 ORTHO05D003321 1.3e-22 111.3 304 29.3
GSVIVG01007072001 Vitis vinifera HOM05D002888 ORTHO05D003321 2.2e-22 110.5 300 29.0
Sopen11g005150 Solanum pennellii HOM05D002888 ORTHO05D003321 3.7e-22 109.8 305 28.2
TAR628G0527 Trochodendron aralioides HOM05D002888 ORTHO05D003321 3.7e-22 109.8 312 29.5
Dinv20800 Davidia involucrata HOM05D002888 ORTHO05D003321 4.8e-22 109.4 305 29.5
Gohir.D11G054400 Gossypium hirsutum HOM05D002888 ORTHO05D003321 6.3e-22 109.0 295 29.5
A08p23140 Brassica napus HOM05D002888 ORTHO05D003321 1.1e-21 108.2 300 28.7
BolC3t20115H Brassica oleracea HOM05D002888 ORTHO05D003321 1.1e-21 108.2 301 29.2
Solyc11g010370.1 Solanum lycopersicum HOM05D002888 ORTHO05D003321 1.1e-21 108.2 310 28.4
Aqoxy6G00686 Aquilegia oxysepala HOM05D002888 ORTHO05D003321 1.4e-21 107.8 310 30.0
C03p78700 Brassica napus HOM05D002888 ORTHO05D003321 1.8e-21 107.5 301 28.9
Prupe.6G195400 Prunus persica HOM05D002888 ORTHO05D003321 1.8e-21 107.5 306 28.1
BcaC01g00342 Brassica carinata HOM05D002888 ORTHO05D003321 3.1e-21 106.7 301 28.9
CANSAT01G2511 Cannabis sativa HOM05D002888 ORTHO05D003321 3.1e-21 106.7 302 30.1
Dinv13633 Davidia involucrata HOM05D002888 ORTHO05D003321 3.1e-21 106.7 298 28.2
EL10Ac6g14804 Beta vulgaris HOM05D002888 ORTHO05D003321 4.1e-21 106.3 306 27.8
Peaxi162Scf00237g00041 Petunia axillaris HOM05D002888 ORTHO05D003321 4.1e-21 106.3 296 28.4
BraA08t34272Z Brassica rapa HOM05D002888 ORTHO05D003321 7.0e-21 105.5 300 28.7
Actinidia06530 Actinidia chinensis HOM05D002888 ORTHO05D003321 9.1e-21 105.1 298 27.9
FAN19G2862 Fragaria x ananassa HOM05D002888 ORTHO05D003321 9.1e-21 105.1 302 26.2
FAN26G0322 Fragaria x ananassa HOM05D002888 ORTHO05D003321 9.1e-21 105.1 302 26.2
PGR102G0243 Punica granatum HOM05D002888 ORTHO05D003321 9.1e-21 105.1 295 27.1
Sed0008018 Sechium edule HOM05D002888 ORTHO05D003321 1.2e-20 104.8 274 27.0
AUR62027189 Chenopodium quinoa HOM05D002888 ORTHO05D003321 2.0e-20 104.0 306 27.5
FAN28G2738 Fragaria x ananassa HOM05D002888 ORTHO05D003321 2.0e-20 104.0 302 25.8
TWI74G0173 Tripterygium wilfordii HOM05D002888 ORTHO05D003321 3.5e-20 103.2 288 28.1
MBI06_g18771_MAGBIO Magnolia biondii HOM05D002888 ORTHO05D003321 4.5e-20 102.8 279 31.2
MSTRG.2589 Avicennia marina HOM05D002888 ORTHO05D003321 5.9e-20 102.4 303 28.7
Rhsim10G0169700 Rhododendron simsii HOM05D002888 ORTHO05D003321 7.7e-20 102.1 303 29.7
THA.LOC104824904 Tarenaya hassleriana HOM05D002888 ORTHO05D003321 2.3e-19 100.5 304 28.0
Dinv42661 Davidia involucrata HOM05D002888 ORTHO05D003321 2.9e-19 100.1 307 28.7
Oeu000873.1 Olea europaea HOM05D002888 ORTHO05D003321 3.8e-19 99.8 283 29.0
Sc03g0000200 Simmondsia chinensis HOM05D002888 ORTHO05D003321 3.8e-19 99.8 284 28.5
Sc03g0000230 Simmondsia chinensis HOM05D002888 ORTHO05D003321 3.8e-19 99.8 284 28.5
Ah.02g125790 Amaranthus hybridus HOM05D002888 ORTHO05D003321 5.0e-19 99.4 303 27.7
FAN23G2029 Fragaria x ananassa HOM05D002888 ORTHO05D003321 5.0e-19 99.4 301 25.6
Oeu002153.1 Olea europaea HOM05D002888 ORTHO05D003321 6.5e-19 99.0 303 27.4
Ca_25141_v3 Cicer arietinum L. HOM05D002888 ORTHO05D003321 8.6e-19 98.6 304 27.6
Ca_30634_v3 Cicer arietinum L. HOM05D002888 ORTHO05D003321 8.6e-19 98.6 304 27.6
FvH4_1g20100 Fragaria vesca HOM05D002888 ORTHO05D003321 8.6e-19 98.6 277 26.4
PGSC0003DMG400016215 Solanum tuberosum HOM05D002888 ORTHO05D003321 8.6e-19 98.6 305 27.5
Glyma.11G242900 Glycine max HOM05D002888 ORTHO05D003321 1.5e-18 97.8 300 27.7
Lsat_1_v5_gn_2_65861 Lactuca sativa HOM05D002888 ORTHO05D003321 1.5e-18 97.8 299 28.8
Lj2P538T22 Lonicera japonica HOM05D002888 ORTHO05D003321 1.5e-18 97.8 298 28.2
Nn5g29964 Nelumbo nucifera HOM05D002888 ORTHO05D003321 1.5e-18 97.8 309 28.2
MSTRG.23365 Avicennia marina HOM05D002888 ORTHO05D003321 3.2e-18 96.7 301 27.9
Cfa017907 Carpinus fangiana HOM05D002888 ORTHO05D003321 3.2e-18 96.7 303 27.7
COL.COLO4_27312 Corchorus olitorius HOM05D002888 ORTHO05D003321 5.5e-18 95.9 305 28.5
Gohir.A05G222700 Gossypium hirsutum HOM05D002888 ORTHO05D003321 5.5e-18 95.9 300 29.3
HanXRQChr10g0314731 Helianthus annuus HOM05D002888 ORTHO05D003321 9.5e-18 95.1 294 27.6
MD15G1316600 Malus domestica HOM05D002888 ORTHO05D003321 9.5e-18 95.1 302 26.2
vmacro22669 Vaccinium macrocarpon HOM05D002888 ORTHO05D003321 2.1e-17 94.0 255 29.4
Migut.H02319 Erythranthe guttata HOM05D002888 ORTHO05D003321 2.8e-17 93.6 293 29.7
Gohir.A06G032800 Gossypium hirsutum HOM05D002888 ORTHO05D003321 4.7e-17 92.8 302 27.8
Gorai.009G232900 Gossypium raimondii HOM05D002888 ORTHO05D003321 4.7e-17 92.8 296 28.4
DCAR_003463 Daucus carota HOM05D002888 ORTHO05D003321 6.1e-17 92.4 301 25.6
Gohir.D06G033700 Gossypium hirsutum HOM05D002888 ORTHO05D003321 1.0e-16 91.7 302 29.1
Gorai.010G037200 Gossypium raimondii HOM05D002888 ORTHO05D003321 1.4e-16 91.3 302 28.5
Atru.chr13.1094 Acer truncatum HOM05D002888 ORTHO05D003321 2.3e-16 90.5 307 28.0
Ciclev10001701m.g Citrus clementina HOM05D002888 ORTHO05D003321 2.3e-16 90.5 286 27.3
Gohir.D05G225400 Gossypium hirsutum HOM05D002888 ORTHO05D003321 2.3e-16 90.5 296 28.0
CiPaw.15G044500 Carya illinoinensis HOM05D002888 ORTHO05D003321 3.0e-16 90.1 301 27.6
Medtr3g099670 Medicago truncatula HOM05D002888 ORTHO05D003321 5.2e-16 89.4 301 27.2
Dinv44817 Davidia involucrata HOM05D002888 ORTHO05D003321 6.8e-16 89.0 305 27.5
TPR.G6366 Trifolium pratense HOM05D002888 ORTHO05D003321 2.0e-15 87.4 306 26.1
Atru.chr13.1103 Acer truncatum HOM05D002888 ORTHO05D003321 2.6e-15 87.0 307 27.4
Oeu011241.1 Olea europaea HOM05D002888 ORTHO05D003321 2.6e-15 87.0 306 26.8
COL.COLO4_11980 Corchorus olitorius HOM05D002888 ORTHO05D003321 3.4e-15 86.7 295 26.8
Ca_16030_v3 Cicer arietinum L. HOM05D002888 ORTHO05D003321 4.4e-15 86.3 300 25.7
Haze_18244 Corylus avellana HOM05D002888 ORTHO05D003321 7.5e-15 85.5 282 27.0
Lalb_Chr08g0242261 Lupinus albus HOM05D002888 ORTHO05D003321 7.5e-15 85.5 311 29.3
MD08G1190800 Malus domestica HOM05D002888 ORTHO05D003321 7.5e-15 85.5 302 26.8
CDE03G0472 Ceratophyllum demersum HOM05D002888 ORTHO05D003321 9.8e-15 85.1 303 28.1
Gorai.007G059500 Gossypium raimondii HOM05D002888 ORTHO05D003321 1.7e-14 84.3 291 26.1
PGSC0003DMG400002134 Solanum tuberosum HOM05D002888 ORTHO05D003321 1.7e-14 84.3 297 26.6
Glyma.14G178700 Glycine max HOM05D002888 ORTHO05D003321 2.8e-14 83.6 303 26.7
CAN.G1173.10 Capsicum annuum HOM05D002888 ORTHO05D003321 3.7e-14 83.2 303 26.4
Nitab4.5_0001078g0140 Nicotiana tabacum HOM05D002888 ORTHO05D003321 3.7e-14 83.2 299 27.4
Nitab4.5_0007011g0010 Nicotiana tabacum HOM05D002888 ORTHO05D003321 6.3e-14 82.4 300 27.0
Solyc04g074830.1 Solanum lycopersicum HOM05D002888 ORTHO05D003321 8.3e-14 82.0 300 26.7
Lsat_1_v5_gn_6_105921 Lactuca sativa HOM05D002888 ORTHO05D003321 2.4e-13 80.5 296 26.7
MD15G1378100 Malus domestica HOM05D002888 ORTHO05D003321 2.4e-13 80.5 302 26.2
Rhsim07G0206000 Rhododendron simsii HOM05D002888 ORTHO05D003321 2.4e-13 80.5 302 27.2
Nitab4.5_0004715g0010 Nicotiana tabacum HOM05D002888 ORTHO05D003321 3.1e-13 80.1 219 28.8
Oeu031415.1 Olea europaea HOM05D002888 ORTHO05D003321 4.1e-13 79.7 307 26.7
HanXRQChr05g0163241 Helianthus annuus HOM05D002888 ORTHO05D003321 5.4e-13 79.3 303 26.7
Sopen00g013050 Solanum pennellii HOM05D002888 ORTHO05D003321 7.0e-13 79.0 297 26.3
DCAR_019303 Daucus carota HOM05D002888 ORTHO05D003321 9.2e-13 78.6 307 24.4
Rhsim07G0207000 Rhododendron simsii HOM05D002888 ORTHO05D003321 9.2e-13 78.6 302 27.2
PSO675G6142 Papaver somniferum HOM05D002888 ORTHO05D003321 1.2e-12 78.2 313 24.9
Peaxi162Scf00139g00057 Petunia axillaris HOM05D002888 ORTHO05D003321 1.2e-12 78.2 308 26.6
HanXRQChr14g0445001 Helianthus annuus HOM05D002888 ORTHO05D003321 1.6e-12 77.8 295 25.8
Prupe.1G524700 Prunus persica HOM05D002888 ORTHO05D003321 3.5e-12 76.6 305 26.9
RcHm_v2.0_Chr7g0238041 Rosa chinensis HOM05D002888 ORTHO05D003321 3.5e-12 76.6 274 25.2
FvH4_5g36220 Fragaria vesca HOM05D002888 ORTHO05D003321 7.8e-12 75.5 274 24.8
FAN13G3035 Fragaria x ananassa HOM05D002888 ORTHO05D003321 1.3e-11 74.7 297 24.6
Sed0014089 Sechium edule HOM05D002888 ORTHO05D003321 2.3e-11 73.9 305 25.6
Manes.18G062900 Manihot esculenta HOM05D002888 ORTHO05D003321 2.9e-11 73.6 279 26.9
vmacro04702 Vaccinium macrocarpon HOM05D002888 ORTHO05D003321 1.1e-10 71.6 315 25.4
Duzib116G0178 Durio zibethinus HOM05D002888 ORTHO05D003321 4.3e-10 69.7 235 25.5
Eucgr.H04733 Eucalyptus grandis HOM05D002888 ORTHO05D003321 4.3e-10 69.7 157 28.7
CARHR246540 Cardamine hirsuta HOM05D002888 ORTHO05D003321 9.5e-10 68.6 151 29.1
CAN.G905.1 Capsicum annuum HOM05D002888 ORTHO05D003321 1.6e-09 67.8 164 32.9
vmacro22071 Vaccinium macrocarpon HOM05D002888 ORTHO05D003321 6.1e-09 65.9 176 27.8
Thecc.08G064800 Theobroma cacao HOM05D002888 ORTHO05D003321 1.0e-08 65.1 280 23.9
CARHR246530 Cardamine hirsuta HOM05D002888 ORTHO05D003321 5.2e-08 62.8 149 29.5
AUR62027831 Chenopodium quinoa HOM05D002888 ORTHO05D003321 2.6e-07 60.5 281 26.3
AUR62018989 Chenopodium quinoa HOM05D002888 ORTHO05D003321 5.7e-07 59.3 281 26.0
SalBow3G2404 Salvia bowleyana HOM05D002888 ORTHO05D003321 4.9e-06 56.2 115 32.2
SalBow3G3987 Salvia bowleyana HOM05D002888 ORTHO05D003321 4.9e-06 56.2 115 32.2


User provided reference genes

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