Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 1.1e-59 233.4 148 100.0
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 1.2e-56 223.4 145 98.6
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 1.2e-56 223.4 145 98.6
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 1.5e-32 143.3 165 68.5
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 1.6e-29 133.3 166 62.7
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 2.0e-29 132.9 169 56.2
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 7.8e-29 131.0 168 60.1
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 8.0e-26 120.9 169 50.9
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 1.1e-25 120.6 168 53.6
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 1.8e-25 119.8 168 63.1
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 9.8e-24 114.0 168 51.2
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 2.9e-23 112.5 159 52.8
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 6.4e-23 111.3 164 52.4
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 4.1e-22 108.6 167 46.7
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 5.6e-19 98.2 158 48.1
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 2.2e-15 86.3 96 55.2
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 6.4e-15 84.7 93 55.9
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.9e-14 83.2 96 55.2
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.4e-14 82.8 149 41.6
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 4.1e-14 82.0 95 49.5
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 7.1e-14 81.3 167 38.3
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 7.1e-14 81.3 65 67.7
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 2.1e-13 79.7 92 55.4
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 2.7e-13 79.3 92 53.3
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 3.5e-13 79.0 159 47.8
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 4.6e-13 78.6 94 50.0
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 6.0e-13 78.2 94 54.3
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 1.0e-12 77.4 92 52.2
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 1.0e-12 77.4 92 52.2
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.3e-12 77.0 91 48.4
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 1.7e-12 76.6 92 52.2
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.7e-12 76.6 147 48.3
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 3.0e-12 75.9 90 45.6
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 3.0e-12 75.9 90 45.6
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 3.0e-12 75.9 148 40.5
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 3.9e-12 75.5 151 35.8
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 3.9e-12 75.5 91 47.3
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 3.9e-12 75.5 91 47.3
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 5.1e-12 75.1 155 50.3
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 5.1e-12 75.1 94 53.2
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 5.1e-12 75.1 93 51.6
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 5.1e-12 75.1 90 50.0
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 6.6e-12 74.7 143 40.6
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 6.6e-12 74.7 164 38.4
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 8.6e-12 74.3 91 47.3
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 8.6e-12 74.3 92 51.1
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 8.6e-12 74.3 90 47.8
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 1.1e-11 73.9 149 44.3
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 1.5e-11 73.6 77 55.8
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 1.5e-11 73.6 92 50.0
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 1.9e-11 73.2 92 52.2
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 1.9e-11 73.2 94 53.2
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 2.5e-11 72.8 91 46.2
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 2.5e-11 72.8 92 52.2
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 3.3e-11 72.4 93 51.6
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 4.3e-11 72.0 90 45.6
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 5.6e-11 71.6 148 48.6
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 5.6e-11 71.6 101 47.5
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 5.6e-11 71.6 92 47.8
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 5.6e-11 71.6 146 40.4
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 5.6e-11 71.6 93 52.7
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 7.3e-11 71.2 98 49.0
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 7.3e-11 71.2 93 50.5
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 7.3e-11 71.2 142 37.3
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.6e-10 70.1 115 41.7
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 2.1e-10 69.7 151 39.1
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 2.8e-10 69.3 102 47.1
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.8e-10 69.3 115 41.7
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 2.8e-10 69.3 93 46.2
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 2.8e-10 69.3 93 45.2
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 3.6e-10 68.9 89 44.9
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 4.7e-10 68.6 115 41.7
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 4.7e-10 68.6 90 47.8
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 8.1e-10 67.8 146 40.4
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 8.1e-10 67.8 69 55.1
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 8.1e-10 67.8 160 38.1
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.1e-09 67.4 102 45.1
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 1.1e-09 67.4 95 44.2
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 1.4e-09 67.0 91 46.2
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 1.4e-09 67.0 168 34.5
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.8e-09 66.6 92 48.9
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 2.4e-09 66.2 92 50.0
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 3.1e-09 65.9 159 35.8
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 4.0e-09 65.5 159 39.0
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 5.2e-09 65.1 65 53.8
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 5.2e-09 65.1 64 59.4
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 6.8e-09 64.7 94 47.9
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 1.5e-08 63.5 166 35.5
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.6e-08 62.8 78 42.3
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 2.6e-08 62.8 102 43.1
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 4.4e-08 62.0 69 59.4
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 5.8e-08 61.6 108 44.4
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 9.9e-08 60.8 100 43.0
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.7e-07 60.1 76 44.7
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 3.8e-07 58.9 170 33.5
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 4.9e-07 58.5 79 45.6
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 4.9e-07 58.5 116 38.8
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 4.9e-07 58.5 35 77.1
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 6.4e-07 58.2 90 42.2
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 1.1e-06 57.4 66 53.0
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.4e-06 57.0 79 44.3
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 1.4e-06 57.0 76 50.0
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 2.4e-06 56.2 94 43.6
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 2.4e-06 56.2 85 42.4
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 4.2e-06 55.5 90 42.2
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 7.1e-06 54.7 91 48.4
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 9.2e-06 54.3 85 42.4
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 9.2e-06 54.3 168 35.7


User provided reference genes

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