Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38166 Brassica carinata HOM05D003220 ORTHO05D003944 2.6e-104 382.1 197 100.0
Aa31LG7G11010 Aethionema arabicum HOM05D003220 ORTHO05D003944 1.6e-37 160.2 233 48.5
BcaC06g32854 Brassica carinata HOM05D003220 ORTHO05D003944 3.5e-37 159.1 247 46.6
BcaNung07242 Brassica carinata HOM05D003220 ORTHO05D003944 3.5e-37 159.1 247 46.6
Sp7g22820 Schrenkiella parvula HOM05D003220 ORTHO05D003944 7.9e-37 157.9 247 46.2
Carub.0007s1622 Capsella rubella HOM05D003220 ORTHO05D003944 1.0e-36 157.5 247 46.2
Thhalv10025000m.g Eutrema salsugineum HOM05D003220 ORTHO05D003944 1.0e-36 157.5 247 45.7
A03p55590 Brassica napus HOM05D003220 ORTHO05D003944 1.3e-36 157.1 252 46.0
C01p20130 Brassica napus HOM05D003220 ORTHO05D003944 1.3e-36 157.1 252 46.0
BolC1t01942H Brassica oleracea HOM05D003220 ORTHO05D003944 1.3e-36 157.1 252 46.0
BraA03t14626Z Brassica rapa HOM05D003220 ORTHO05D003944 1.3e-36 157.1 252 45.6
AL7G28350 Arabidopsis lyrata HOM05D003220 ORTHO05D003944 5.1e-36 155.2 247 45.7
AT4G24830 Arabidopsis thaliana HOM05D003220 ORTHO05D003944 5.1e-36 155.2 247 45.3
A01p16140 Brassica napus HOM05D003220 ORTHO05D003944 6.7e-36 154.8 253 45.5
BraA01t01550Z Brassica rapa HOM05D003220 ORTHO05D003944 6.7e-36 154.8 253 45.5
CARHR232250 Cardamine hirsuta HOM05D003220 ORTHO05D003944 1.9e-35 153.3 247 44.5
Solyc05g012270.3 Solanum lycopersicum HOM05D003220 ORTHO05D003944 3.3e-35 152.5 247 45.7
Sopen05g007100 Solanum pennellii HOM05D003220 ORTHO05D003944 3.3e-35 152.5 247 45.7
C07p53830 Brassica napus HOM05D003220 ORTHO05D003944 7.4e-35 151.4 266 42.9
PGSC0003DMG400028317 Solanum tuberosum HOM05D003220 ORTHO05D003944 7.4e-35 151.4 247 45.3
Nitab4.5_0000231g0280 Nicotiana tabacum HOM05D003220 ORTHO05D003944 1.3e-34 150.6 247 45.3
Peaxi162Scf00175g00120 Petunia axillaris HOM05D003220 ORTHO05D003944 2.2e-34 149.8 247 44.9
Lalb_Chr06g0172311 Lupinus albus HOM05D003220 ORTHO05D003944 2.8e-34 149.4 241 44.4
Thecc.03G126500 Theobroma cacao HOM05D003220 ORTHO05D003944 2.8e-34 149.4 247 44.9
Eucgr.K02738 Eucalyptus grandis HOM05D003220 ORTHO05D003944 3.7e-34 149.1 243 45.7
Duzib205G1890 Durio zibethinus HOM05D003220 ORTHO05D003944 8.2e-34 147.9 247 44.5
Lalb_Chr07g0183341 Lupinus albus HOM05D003220 ORTHO05D003944 8.2e-34 147.9 247 44.1
Hund03392 Selenicereus undatus HOM05D003220 ORTHO05D003944 8.2e-34 147.9 247 44.1
THA.LOC104825013 Tarenaya hassleriana HOM05D003220 ORTHO05D003944 8.2e-34 147.9 247 44.5
Ciclev10019860m.g Citrus clementina HOM05D003220 ORTHO05D003944 1.1e-33 147.5 247 44.5
Lalb_Chr13g0297361 Lupinus albus HOM05D003220 ORTHO05D003944 1.1e-33 147.5 247 43.3
Medtr5g042880 Medicago truncatula HOM05D003220 ORTHO05D003944 1.1e-33 147.5 247 44.1
CAN.G1528.7 Capsicum annuum HOM05D003220 ORTHO05D003944 1.4e-33 147.1 247 44.5
AUR62009263 Chenopodium quinoa HOM05D003220 ORTHO05D003944 1.4e-33 147.1 238 44.5
Glyma.17G128600 Glycine max HOM05D003220 ORTHO05D003944 1.4e-33 147.1 247 44.1
Medtr4g103680 Medicago truncatula HOM05D003220 ORTHO05D003944 1.4e-33 147.1 247 44.1
TAR371G0289 Trochodendron aralioides HOM05D003220 ORTHO05D003944 1.8e-33 146.7 247 44.5
CSS0002367 Camellia sinensis var. sinensis HOM05D003220 ORTHO05D003944 2.4e-33 146.4 247 43.7
Dinv11156 Davidia involucrata HOM05D003220 ORTHO05D003944 2.4e-33 146.4 247 44.1
Duzib084G0962 Durio zibethinus HOM05D003220 ORTHO05D003944 2.4e-33 146.4 247 44.1
Glyma.05G046700 Glycine max HOM05D003220 ORTHO05D003944 2.4e-33 146.4 247 43.7
Duzib068G0624 Durio zibethinus HOM05D003220 ORTHO05D003944 3.1e-33 146.0 247 44.1
PSO478G5055 Papaver somniferum HOM05D003220 ORTHO05D003944 3.1e-33 146.0 247 43.3
PSO782G5387 Papaver somniferum HOM05D003220 ORTHO05D003944 3.1e-33 146.0 247 43.3
Ca_00914_v3 Cicer arietinum L. HOM05D003220 ORTHO05D003944 4.1e-33 145.6 247 44.1
Oeu054655.1 Olea europaea HOM05D003220 ORTHO05D003944 4.1e-33 145.6 247 42.5
Prupe.7G058500 Prunus persica HOM05D003220 ORTHO05D003944 4.1e-33 145.6 247 43.7
TAR629G1627 Trochodendron aralioides HOM05D003220 ORTHO05D003944 4.1e-33 145.6 247 44.9
CANSAT64G0212 Cannabis sativa HOM05D003220 ORTHO05D003944 5.3e-33 145.2 247 43.3
MELO3C002352.2 Cucumis melo HOM05D003220 ORTHO05D003944 5.3e-33 145.2 247 42.9
Migut.D00060 Erythranthe guttata HOM05D003220 ORTHO05D003944 5.3e-33 145.2 247 43.7
Gohir.D07G056400 Gossypium hirsutum HOM05D003220 ORTHO05D003944 5.3e-33 145.2 247 43.3
Phvul.003G209766 Phaseolus vulgaris HOM05D003220 ORTHO05D003944 5.3e-33 145.2 247 43.7
MBI08_g11776_MAGBIO Magnolia biondii HOM05D003220 ORTHO05D003944 6.9e-33 144.8 247 44.5
Cc00_g12840 Coffea canephora HOM05D003220 ORTHO05D003944 9.0e-33 144.4 235 44.7
MSTRG.21708 Avicennia marina HOM05D003220 ORTHO05D003944 1.2e-32 144.1 247 43.7
CSS0036065 Camellia sinensis var. sinensis HOM05D003220 ORTHO05D003944 1.2e-32 144.1 247 43.7
CiPaw.12G040800 Carya illinoinensis HOM05D003220 ORTHO05D003944 1.2e-32 144.1 252 43.3
ClCG03G003670 Citrullus lanatus HOM05D003220 ORTHO05D003944 1.2e-32 144.1 247 42.1
Glyma.05G046900 Glycine max HOM05D003220 ORTHO05D003944 1.5e-32 143.7 247 42.1
Phvul.003G209832 Phaseolus vulgaris HOM05D003220 ORTHO05D003944 1.5e-32 143.7 247 42.5
THA.LOC104811595 Tarenaya hassleriana HOM05D003220 ORTHO05D003944 1.5e-32 143.7 247 43.3
VMungo1215G0590 Vigna mungo HOM05D003220 ORTHO05D003944 1.5e-32 143.7 247 42.9
Gohir.A07G051900 Gossypium hirsutum HOM05D003220 ORTHO05D003944 2.0e-32 143.3 247 43.3
Gorai.001G059900 Gossypium raimondii HOM05D003220 ORTHO05D003944 2.0e-32 143.3 247 43.3
CANSAT80G2734 Cannabis sativa HOM05D003220 ORTHO05D003944 2.6e-32 142.9 247 42.9
Potri.008G020200 Populus trichocarpa HOM05D003220 ORTHO05D003944 2.6e-32 142.9 247 42.9
SalBow2G0412 Salvia bowleyana HOM05D003220 ORTHO05D003944 2.6e-32 142.9 228 46.1
SGA_v2.0_scaffold376G50300 Striga asiatica HOM05D003220 ORTHO05D001798 2.6e-32 142.9 247 42.5
TPR.G30011 Trifolium pratense HOM05D003220 ORTHO05D003944 2.6e-32 142.9 247 42.9
CsaV3_1G009560 Cucumis sativus L. HOM05D003220 ORTHO05D003944 3.4e-32 142.5 247 41.7
Migut.N00934 Erythranthe guttata HOM05D003220 ORTHO05D003944 3.4e-32 142.5 247 42.9
Hma1.2p1_1439F.1_g283510 Hydrangea macrophylla HOM05D003220 ORTHO05D003944 3.4e-32 142.5 247 42.5
Manes.03G085300 Manihot esculenta HOM05D003220 ORTHO05D003944 3.4e-32 142.5 247 42.5
Prupe.5G153100 Prunus persica HOM05D003220 ORTHO05D003944 3.4e-32 142.5 247 42.9
vmacro05131 Vaccinium macrocarpon HOM05D003220 ORTHO05D003944 3.4e-32 142.5 247 42.5
Ah.03g136360 Amaranthus hybridus HOM05D003220 ORTHO05D003944 4.5e-32 142.1 235 44.3
Nitab4.5_0001487g0130 Nicotiana tabacum HOM05D003220 ORTHO05D003944 4.5e-32 142.1 272 41.5
QL10p004159 Quercus lobata HOM05D003220 ORTHO05D003944 4.5e-32 142.1 247 42.5
Sed0014346 Sechium edule HOM05D003220 ORTHO05D003944 4.5e-32 142.1 247 41.7
Potri.010G239000 Populus trichocarpa HOM05D003220 ORTHO05D003944 5.9e-32 141.7 247 42.5
ECA246G3064 Erigeron canadensis HOM05D003220 ORTHO05D003944 7.7e-32 141.4 247 42.9
TWI38G0393 Tripterygium wilfordii HOM05D003220 ORTHO05D003944 7.7e-32 141.4 247 42.5
Atru.chr9.1087 Acer truncatum HOM05D003220 ORTHO05D003944 1.0e-31 141.0 247 42.5
Aqoxy6G02806 Aquilegia oxysepala HOM05D003220 ORTHO05D003944 1.0e-31 141.0 247 41.7
MSTRG.18081 Avicennia marina HOM05D003220 ORTHO05D003944 1.0e-31 141.0 247 42.9
QL10p004209 Quercus lobata HOM05D003220 ORTHO05D003944 1.0e-31 141.0 247 42.5
RcHm_v2.0_Chr7g0190471 Rosa chinensis HOM05D003220 ORTHO05D003944 1.0e-31 141.0 247 42.9
GSVIVG01008510001 Vitis vinifera HOM05D003220 ORTHO05D003944 1.0e-31 141.0 249 43.8
Aqoxy7G03930 Aquilegia oxysepala HOM05D003220 ORTHO05D003944 1.3e-31 140.6 247 41.7
RcHm_v2.0_Chr7g0190481 Rosa chinensis HOM05D003220 ORTHO05D003944 1.3e-31 140.6 247 42.5
Sc10g0008710 Simmondsia chinensis HOM05D003220 ORTHO05D003944 1.3e-31 140.6 248 43.1
CiPaw.11G009400 Carya illinoinensis HOM05D003220 ORTHO05D003944 1.7e-31 140.2 247 42.9
Glyma.05G236000 Glycine max HOM05D003220 ORTHO05D003944 1.7e-31 140.2 247 42.1
DCAR_007481 Daucus carota HOM05D003220 ORTHO05D003944 2.2e-31 139.8 247 42.5
HanXRQChr05g0155091 Helianthus annuus HOM05D003220 ORTHO05D003944 2.2e-31 139.8 247 41.7
MD06G1144100 Malus domestica HOM05D003220 ORTHO05D003944 2.2e-31 139.8 254 41.7
Sed0000451 Sechium edule HOM05D003220 ORTHO05D003944 2.2e-31 139.8 247 41.3
Medtr3g088970 Medicago truncatula HOM05D003220 ORTHO05D003944 2.9e-31 139.4 247 40.5
Sed0017817 Sechium edule HOM05D003220 ORTHO05D003944 3.8e-31 139.0 247 40.9
Sc10g0010420 Simmondsia chinensis HOM05D003220 ORTHO05D003944 3.8e-31 139.0 247 43.7
MELO3C026229.2 Cucumis melo HOM05D003220 ORTHO05D003944 5.0e-31 138.7 247 40.9
CsaV3_1G009540 Cucumis sativus L. HOM05D003220 ORTHO05D003944 5.0e-31 138.7 247 41.3
HanXRQChr08g0229301 Helianthus annuus HOM05D003220 ORTHO05D003944 5.0e-31 138.7 247 41.7
MD06G1144000 Malus domestica HOM05D003220 ORTHO05D003944 5.0e-31 138.7 254 41.7
ATR1149G068 Amborella trichopoda HOM05D003220 ORTHO05D003944 6.5e-31 138.3 247 41.7
ECA247G1256 Erigeron canadensis HOM05D003220 ORTHO05D003944 6.5e-31 138.3 247 41.7
Lsat_1_v5_gn_5_13561 Lactuca sativa HOM05D003220 ORTHO05D003944 6.5e-31 138.3 235 43.8
ECA247G3880 Erigeron canadensis HOM05D003220 ORTHO05D003944 8.5e-31 137.9 247 41.7
ClCG06G017780 Citrullus lanatus HOM05D003220 ORTHO05D003944 1.1e-30 137.5 247 41.3
TWI63G1463 Tripterygium wilfordii HOM05D003220 ORTHO05D003944 1.1e-30 137.5 247 42.5
unitig_750.g28437 Utricularia gibba HOM05D003220 ORTHO05D003944 1.1e-30 137.5 244 42.2
Rhsim08G0188400 Rhododendron simsii HOM05D003220 ORTHO05D003944 1.4e-30 137.1 271 40.6
CsaV3_1G000670 Cucumis sativus L. HOM05D003220 ORTHO05D003944 1.9e-30 136.7 247 41.7
FvH4_5g30030 Fragaria vesca HOM05D003220 ORTHO05D003944 1.9e-30 136.7 247 42.5
FAN04G2217 Fragaria x ananassa HOM05D003220 ORTHO05D003944 1.9e-30 136.7 247 42.5
FvH4_5g07910 Fragaria vesca HOM05D003220 ORTHO05D003944 2.5e-30 136.3 247 42.5
FAN18G1033 Fragaria x ananassa HOM05D003220 ORTHO05D003944 2.5e-30 136.3 247 42.5
Pp3c1_33150 Physcomitrium patens HOM05D003220 ORTHO05D003944 2.5e-30 136.3 255 41.6
SEGI_40301 Sequoiadendron giganteum HOM05D003220 ORTHO05D003944 2.5e-30 136.3 252 41.3
COL.COLO4_28080 Corchorus olitorius HOM05D003220 ORTHO05D003944 3.2e-30 136.0 230 43.9
FAN08G0954 Fragaria x ananassa HOM05D003220 ORTHO05D003944 3.2e-30 136.0 247 42.5
FAN13G0994 Fragaria x ananassa HOM05D003220 ORTHO05D003944 3.2e-30 136.0 247 42.5
SEGI_19712 Sequoiadendron giganteum HOM05D003220 ORTHO05D003944 3.2e-30 136.0 247 40.9
FAN08G0739 Fragaria x ananassa HOM05D003220 ORTHO05D003944 4.2e-30 135.6 247 42.5
Lj1g0021098 Lotus japonicus HOM05D003220 ORTHO05D003944 4.2e-30 135.6 247 38.9
PGR004G0659 Punica granatum HOM05D003220 ORTHO05D003944 4.2e-30 135.6 247 41.7
HPP92_001262 Vanilla planifolia HOM05D003220 ORTHO05D003944 4.2e-30 135.6 247 40.9
Cfa018844 Carpinus fangiana HOM05D003220 ORTHO05D003944 7.2e-30 134.8 247 40.9
FAN18G3924 Fragaria x ananassa HOM05D003220 ORTHO05D003944 7.2e-30 134.8 247 42.1
Os12g0235800 Oryza sativa ssp. japonica HOM05D003220 ORTHO05D003944 7.2e-30 134.8 247 40.5
ClCG03G003660 Citrullus lanatus HOM05D003220 ORTHO05D003944 9.4e-30 134.4 247 40.1
Haze_24344 Corylus avellana HOM05D003220 ORTHO05D003944 9.4e-30 134.4 250 41.2
Lj4g0002027 Lotus japonicus HOM05D003220 ORTHO05D003944 9.4e-30 134.4 247 40.1
MD14G1159300 Malus domestica HOM05D003220 ORTHO05D003944 9.4e-30 134.4 255 41.6
SGA_v2.0_scaffold334G49089 Striga asiatica HOM05D003220 ORTHO05D003944 9.4e-30 134.4 279 39.4
AUR62042443 Chenopodium quinoa HOM05D003220 ORTHO05D003944 1.6e-29 133.7 276 38.4
Lj2g0018966 Lotus japonicus HOM05D003220 ORTHO05D003944 1.6e-29 133.7 247 40.1
Lj1g0011038 Lotus japonicus HOM05D003220 ORTHO05D003944 2.1e-29 133.3 247 38.5
Lj1g0011796 Lotus japonicus HOM05D003220 ORTHO05D003944 2.1e-29 133.3 247 38.1
TPR.G26144 Trifolium pratense HOM05D003220 ORTHO05D003944 2.1e-29 133.3 247 38.1
CDE09G1413 Ceratophyllum demersum HOM05D003220 ORTHO05D003944 2.7e-29 132.9 216 44.4
Psat5g139800 Pisum sativum HOM05D003220 ORTHO05D003944 6.1e-29 131.7 253 41.1
Hund19502 Selenicereus undatus HOM05D003220 ORTHO05D003944 6.1e-29 131.7 222 43.2
Mapoly0038s0028 Marchantia polymorpha HOM05D003220 ORTHO05D003944 7.9e-29 131.3 263 38.8
Haze_07237 Corylus avellana HOM05D003220 ORTHO05D003944 1.4e-28 130.6 253 39.5
SMO356G0518 Selaginella moellendorffii HOM05D003220 ORTHO05D003944 1.4e-28 130.6 250 40.0
Ca_29978_v3 Cicer arietinum L. HOM05D003220 ORTHO05D003944 1.8e-28 130.2 222 43.7
EL10Ac2g04001 Beta vulgaris HOM05D003220 ORTHO05D003944 5.1e-28 128.6 222 42.3
AagrBONN_evm.TU.Sc2ySwM_228.4817 Anthoceros agrestis HOM05D003220 ORTHO05D003944 6.7e-28 128.3 247 40.1
arahy.Tifrunner.gnm1.ann1.VD0ABX Arachis hypogaea HOM05D003220 ORTHO05D003944 2.2e-26 123.2 254 40.2
arahy.Tifrunner.gnm1.ann1.HUK63J Arachis hypogaea HOM05D003220 ORTHO05D003944 6.3e-26 121.7 263 37.6
CBR_g61477 Chara braunii HOM05D003220 ORTHO05D003944 6.3e-26 121.7 247 36.8
Lj9C477T17 Lonicera japonica HOM05D003220 ORTHO05D003944 8.2e-26 121.3 222 41.0
SGA_v2.0_scaffold198G41113 Striga asiatica HOM05D003220 ORTHO05D003944 2.2e-23 113.2 255 38.0
Dinv04868 Davidia involucrata HOM05D003220 ORTHO05D003944 6.1e-21 105.1 219 38.8
vmacro18315 Vaccinium macrocarpon HOM05D003220 ORTHO05D003944 2.3e-20 103.2 214 38.3
HPP92_001246 Vanilla planifolia HOM05D003220 ORTHO05D003944 2.0e-19 100.1 214 37.4
Zm00001eb411740 Zea mays HOM05D003220 ORTHO05D003944 2.6e-19 99.8 211 38.4
Lj1g0022826 Lotus japonicus HOM05D003220 ORTHO05D003944 8.2e-18 94.7 211 37.0
FvH4_5g06920 Fragaria vesca HOM05D003220 ORTHO05D003944 1.1e-17 94.4 248 34.7
Glyma.08G043400 Glycine max HOM05D003220 ORTHO05D003944 2.6e-16 89.7 75 68.0
FAN13G1952 Fragaria x ananassa HOM05D003220 ORTHO05D003944 2.9e-15 86.3 83 61.4
Cre09.g416050 Chlamydomonas reinhardtii HOM05D003220 ORTHO05D003944 5.0e-15 85.5 249 30.1
vmacro19215 Vaccinium macrocarpon HOM05D002332 ORTHO05D002509 6.5e-15 85.1 75 64.0
Psat4g065240 Pisum sativum HOM05D003220 ORTHO05D003944 3.2e-14 82.8 178 41.0
PRCOL_00001450 Prasinoderma coloniale HOM05D003220 ORTHO05D003944 3.2e-14 82.8 249 30.5
SMO356G0112 Selaginella moellendorffii HOM05D003220 ORTHO05D003944 2.1e-13 80.1 216 33.3
Nn4g26515 Nelumbo nucifera HOM05D003220 ORTHO05D003944 2.7e-13 79.7 104 49.0
Medtr3g088940 Medicago truncatula HOM05D003220 ORTHO05D003944 4.7e-13 79.0 75 56.0
Rhsim02G0083400 Rhododendron simsii HOM05D003220 ORTHO05D003944 1.8e-12 77.0 104 46.2
Os11g0303050 Oryza sativa ssp. japonica HOM05D003220 ORTHO05D003944 2.3e-12 76.6 55 72.7
BolC7t45873H Brassica oleracea HOM05D003220 ORTHO05D003944 1.1e-11 74.3 54 72.2
Psat0s3176g0120 Pisum sativum HOM05D003220 ORTHO05D003944 4.1e-09 65.9 147 38.1
Pp3c12_4480 Physcomitrium patens HOM05D003220 ORTHO05D003944 7.0e-09 65.1 159 37.1
Psat2g150200 Pisum sativum HOM05D003220 ORTHO05D003944 1.6e-08 63.9 54 63.0
Rhsim13G0121700 Rhododendron simsii HOM05D003220 ORTHO05D003944 3.5e-08 62.8 128 36.7
Oeu003416.1 Olea europaea HOM05D003220 ORTHO05D010382 4.5e-08 62.4 52 65.4
Actinidia25590 Actinidia chinensis HOM05D003220 ORTHO05D003944 5.9e-08 62.0 131 37.4
Lj6g0003196 Lotus japonicus HOM05D003220 ORTHO05D003944 2.9e-07 59.7 104 43.3
FvH4_5g06980 Fragaria vesca HOM05D003220 ORTHO05D003944 3.8e-07 59.3 60 56.7


User provided reference genes

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