Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g37803 Brassica carinata HOM05D038468 ORTHO05D004400 3.1e-53 211.8 131 100.0
BolC8t48192H Brassica oleracea HOM05D017686 ORTHO05D023886 2.6e-28 129.0 89 97.8
BcaC05g25737 Brassica carinata HOM05D000173 ORTHO05D004400 3.4e-28 128.6 107 65.4
CARHR019060 Cardamine hirsuta HOM05D000173 ORTHO05D004400 9.9e-28 127.1 107 68.2
BcaB03g12979 Brassica carinata HOM05D003541 ORTHO05D004095 1.7e-27 126.3 106 84.0
BcaNung05445 Brassica carinata HOM05D000173 ORTHO05D004400 1.7e-27 126.3 106 84.0
BcaB07g31853 Brassica carinata HOM05D000173 ORTHO05D004400 2.9e-27 125.6 107 84.1
Carub.0001s1805 Capsella rubella HOM05D000173 ORTHO05D004400 2.9e-27 125.6 106 82.1
Carub.0001s1808 Capsella rubella HOM05D000173 ORTHO05D004400 2.9e-27 125.6 106 82.1
Sp1g16390 Schrenkiella parvula HOM05D000173 ORTHO05D004400 3.8e-27 125.2 107 84.1
AT1G18450 Arabidopsis thaliana HOM05D000173 ORTHO05D004400 4.9e-27 124.8 106 81.1
AL1G30880 Arabidopsis lyrata HOM05D000173 ORTHO05D004400 6.4e-27 124.4 106 79.2
A08p30410 Brassica napus HOM05D000173 ORTHO05D004400 8.4e-27 124.0 106 70.8
Thhalv10007641m.g Eutrema salsugineum HOM05D000173 ORTHO05D004400 1.4e-26 123.2 108 83.3
C08p18620 Brassica napus HOM05D000173 ORTHO05D004400 1.9e-26 122.9 106 83.0
BolC5t30372H Brassica oleracea HOM05D000173 ORTHO05D004400 5.5e-26 121.3 103 65.0
BraA06t24575Z Brassica rapa HOM05D000173 ORTHO05D004400 5.5e-26 121.3 103 82.5
BraA08t34974Z Brassica rapa HOM05D000173 ORTHO05D004400 1.2e-25 120.2 102 74.5
THA.LOC104813899 Tarenaya hassleriana HOM05D000173 ORTHO05D004400 7.9e-25 117.5 106 57.5
Sp5g29110 Schrenkiella parvula HOM05D000173 ORTHO05D004400 1.0e-24 117.1 106 57.5
Thhalv10018569m.g Eutrema salsugineum HOM05D000173 ORTHO05D004400 2.3e-24 115.9 106 57.5
BolC8t49489H Brassica oleracea HOM05D003541 ORTHO05D004095 3.0e-24 115.5 102 83.3
Aa31LG7G3120 Aethionema arabicum HOM05D000173 ORTHO05D004400 3.9e-24 115.2 109 56.9
Potri.012G061300 Populus trichocarpa HOM05D000173 ORTHO05D004400 1.1e-23 113.6 106 53.8
Thecc.09G221900 Theobroma cacao HOM05D000173 ORTHO05D004400 1.1e-23 113.6 106 63.2
arahy.Tifrunner.gnm1.ann1.1T6SIZ Arachis hypogaea HOM05D000173 ORTHO05D004400 3.3e-23 112.1 107 56.1
Duzib168G1916 Durio zibethinus HOM05D000173 ORTHO05D004400 3.3e-23 112.1 106 61.3
Gohir.A13G215300 Gossypium hirsutum HOM05D000173 ORTHO05D004400 3.3e-23 112.1 106 60.4
Gorai.013G249800 Gossypium raimondii HOM05D000173 ORTHO05D004400 3.3e-23 112.1 106 60.4
Lj2g0020115 Lotus japonicus HOM05D000173 ORTHO05D004400 3.3e-23 112.1 107 56.1
Manes.01G012800 Manihot esculenta HOM05D000173 ORTHO05D004400 4.3e-23 111.7 106 52.8
Actinidia35080 Actinidia chinensis HOM05D000173 ORTHO05D004400 7.4e-23 110.9 110 52.7
AT1G73910 Arabidopsis thaliana HOM05D000173 ORTHO05D004400 7.4e-23 110.9 106 57.5
arahy.Tifrunner.gnm1.ann1.SSG76K Arachis hypogaea HOM05D000173 ORTHO05D004400 7.4e-23 110.9 107 55.1
FAN25G2209 Fragaria x ananassa HOM05D000173 ORTHO05D004400 7.4e-23 110.9 105 57.1
TWI15G1235 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 7.4e-23 110.9 106 52.8
FvH4_3g17390 Fragaria vesca HOM05D000173 ORTHO05D004400 9.6e-23 110.5 105 55.2
FAN11G2015 Fragaria x ananassa HOM05D000173 ORTHO05D004400 9.6e-23 110.5 105 55.2
FAN16G2607 Fragaria x ananassa HOM05D000173 ORTHO05D004400 9.6e-23 110.5 105 55.2
FAN21G3174 Fragaria x ananassa HOM05D000173 ORTHO05D004400 9.6e-23 110.5 105 55.2
TWI81G0665 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 1.3e-22 110.2 106 52.8
Atru.chr9.786 Acer truncatum HOM05D000173 ORTHO05D004400 1.6e-22 109.8 107 54.2
GSVIVG01008255001 Vitis vinifera HOM05D000173 ORTHO05D004400 1.6e-22 109.8 109 53.2
Lalb_Chr07g0195271 Lupinus albus HOM05D000173 ORTHO05D004400 2.1e-22 109.4 106 54.7
TPR.G32123 Trifolium pratense HOM05D000173 ORTHO05D004400 2.1e-22 109.4 109 53.2
Glyma.03G107300 Glycine max HOM05D000173 ORTHO05D004400 2.8e-22 109.0 110 52.7
Lalb_Chr12g0210411 Lupinus albus HOM05D000173 ORTHO05D004400 2.8e-22 109.0 106 54.7
TAR365G0790 Trochodendron aralioides HOM05D000173 ORTHO05D004400 2.8e-22 109.0 110 52.7
MSTRG.4553 Avicennia marina HOM05D000173 ORTHO05D004400 3.7e-22 108.6 106 53.8
CiPaw.16G084900 Carya illinoinensis HOM05D000173 ORTHO05D004400 3.7e-22 108.6 109 53.2
Glyma.07G118800 Glycine max HOM05D000173 ORTHO05D004400 3.7e-22 108.6 111 51.4
RcHm_v2.0_Chr5g0028921 Rosa chinensis HOM05D000173 ORTHO05D004400 3.7e-22 108.6 105 54.3
Lj9C429T7 Lonicera japonica HOM05D000173 ORTHO05D004400 4.8e-22 108.2 106 53.8
Medtr5g066400 Medicago truncatula HOM05D000173 ORTHO05D004400 4.8e-22 108.2 109 52.3
Prupe.4G154200 Prunus persica HOM05D000173 ORTHO05D004400 4.8e-22 108.2 107 53.3
Sc04g0003650 Simmondsia chinensis HOM05D000173 ORTHO05D004400 4.8e-22 108.2 108 53.7
Aqoxy2G03970 Aquilegia oxysepala HOM05D000173 ORTHO05D004400 6.2e-22 107.8 110 52.7
Carub.0002s2068 Capsella rubella HOM05D000173 ORTHO05D004400 6.2e-22 107.8 106 54.7
CiPaw.15G127800 Carya illinoinensis HOM05D000173 ORTHO05D004400 6.2e-22 107.8 110 51.8
Eucgr.B00704 Eucalyptus grandis HOM05D000173 ORTHO05D004400 6.2e-22 107.8 110 51.8
Nn1g06280 Nelumbo nucifera HOM05D000173 ORTHO05D004400 6.2e-22 107.8 110 51.8
QL10p023744 Quercus lobata HOM05D000173 ORTHO05D004400 6.2e-22 107.8 110 49.1
Sed0017324 Sechium edule HOM05D000173 ORTHO05D004400 6.2e-22 107.8 110 51.8
CSS0004352 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 8.1e-22 107.5 110 51.8
CSS0020862 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 8.1e-22 107.5 110 51.8
Dinv40423 Davidia involucrata HOM05D000173 ORTHO05D004400 8.1e-22 107.5 107 52.3
MD03G1252000 Malus domestica HOM05D000173 ORTHO05D004400 8.1e-22 107.5 108 52.8
Phvul.010G044300 Phaseolus vulgaris HOM05D000173 ORTHO05D004400 8.1e-22 107.5 111 51.4
VMungo0331G0580 Vigna mungo HOM05D000173 ORTHO05D004400 8.1e-22 107.5 111 51.4
Cc06_g15350 Coffea canephora HOM05D000173 ORTHO05D004400 1.1e-21 107.1 106 52.8
CANSAT35G1697 Cannabis sativa HOM05D000173 ORTHO05D004400 1.4e-21 106.7 107 62.6
Ca_23131_v3 Cicer arietinum L. HOM05D000173 ORTHO05D004400 1.4e-21 106.7 109 68.8
Gohir.D13G219000 Gossypium hirsutum HOM05D000173 ORTHO05D004400 1.4e-21 106.7 106 59.4
PGR042G0409 Punica granatum HOM05D000173 ORTHO05D004400 1.4e-21 106.7 108 50.9
Sed0004858 Sechium edule HOM05D000173 ORTHO05D004400 1.4e-21 106.7 110 51.8
Lsat_1_v5_gn_8_109740 Lactuca sativa HOM05D000173 ORTHO05D004400 1.8e-21 106.3 106 51.9
Medtr8g464900 Medicago truncatula HOM05D000173 ORTHO05D004400 1.8e-21 106.3 109 51.4
Cpa.g.sc13.24 Carica papaya HOM05D000173 ORTHO05D004400 2.4e-21 105.9 108 51.9
Solyc12g037980.2 Solanum lycopersicum HOM05D000173 ORTHO05D004400 3.1e-21 105.5 106 51.9
Sopen12g017690 Solanum pennellii HOM05D000173 ORTHO05D004400 3.1e-21 105.5 106 51.9
MELO3C017295.2 Cucumis melo HOM05D000173 ORTHO05D004400 4.0e-21 105.1 110 51.8
CsaV3_1G003700 Cucumis sativus L. HOM05D000173 ORTHO05D004400 4.0e-21 105.1 110 51.8
Migut.D01593 Erythranthe guttata HOM05D000173 ORTHO05D004400 4.0e-21 105.1 106 50.9
Oeu055898.1 Olea europaea HOM05D000173 ORTHO05D004400 4.0e-21 105.1 106 51.9
CDE07G0020 Ceratophyllum demersum HOM05D000173 ORTHO05D004400 5.3e-21 104.8 108 52.8
ECA236G4399 Erigeron canadensis HOM05D000173 ORTHO05D004400 5.3e-21 104.8 106 52.8
Peaxi162Scf00804g00008 Petunia axillaris HOM05D000173 ORTHO05D004400 5.3e-21 104.8 106 53.8
PGSC0003DMG400021766 Solanum tuberosum HOM05D000173 ORTHO05D004400 5.3e-21 104.8 106 51.9
Aqoxy5G04178 Aquilegia oxysepala HOM05D000173 ORTHO05D004400 6.9e-21 104.4 110 49.1
MSTRG.9268 Avicennia marina HOM05D000173 ORTHO05D004400 6.9e-21 104.4 106 50.9
HanXRQChr11g0323331 Helianthus annuus HOM05D000173 ORTHO05D004400 6.9e-21 104.4 106 51.9
Nitab4.5_0000208g0190 Nicotiana tabacum HOM05D000173 ORTHO05D004400 6.9e-21 104.4 106 52.8
vmacro22486 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 6.9e-21 104.4 107 52.3
ATR0064G093 Amborella trichopoda HOM05D000173 ORTHO05D004400 9.0e-21 104.0 111 51.4
DCAR_011346 Daucus carota HOM05D000173 ORTHO05D004400 9.0e-21 104.0 106 51.9
Glyma.08G040300 Glycine max HOM05D000173 ORTHO05D004400 9.0e-21 104.0 106 52.8
Ca_14793_v3 Cicer arietinum L. HOM05D000173 ORTHO05D004400 1.2e-20 103.6 109 67.9
COL.COLO4_38438 Corchorus olitorius HOM05D000173 ORTHO05D004400 1.2e-20 103.6 114 49.1
MD11G1273400 Malus domestica HOM05D000173 ORTHO05D004400 1.2e-20 103.6 108 50.9
Sabra15G0075200 Salix brachista HOM05D000173 ORTHO05D004400 1.5e-20 103.2 106 52.8
Ah.09g233670 Amaranthus hybridus HOM05D000173 ORTHO05D004400 2.0e-20 102.8 109 49.5
ATR0737G114 Amborella trichopoda HOM05D000173 ORTHO05D004400 2.0e-20 102.8 110 50.9
Cc04_g07400 Coffea canephora HOM05D000173 ORTHO05D004400 2.0e-20 102.8 106 50.0
PSO017G6263 Papaver somniferum HOM05D000173 ORTHO05D004400 2.0e-20 102.8 110 50.0
Potri.015G053100 Populus trichocarpa HOM05D000173 ORTHO05D004400 2.0e-20 102.8 106 51.9
PGR083G2056 Punica granatum HOM05D000173 ORTHO05D004400 2.6e-20 102.4 109 49.5
vmacro16454 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 3.4e-20 102.1 106 51.9
HPP92_025882 Vanilla planifolia HOM05D000173 ORTHO05D004400 3.4e-20 102.1 110 49.1
Lalb_Chr05g0222631 Lupinus albus HOM05D000173 ORTHO05D004400 5.8e-20 101.3 113 49.6
PSO063G4537 Papaver somniferum HOM05D000173 ORTHO05D004400 5.8e-20 101.3 110 49.1
SalBow5G1673 Salvia bowleyana HOM05D000173 ORTHO05D004400 5.8e-20 101.3 106 50.0
arahy.Tifrunner.gnm1.ann1.DFGQ2J Arachis hypogaea HOM05D000173 ORTHO05D004400 1.3e-19 100.1 113 48.7
arahy.Tifrunner.gnm1.ann1.NI3B5C Arachis hypogaea HOM05D000173 ORTHO05D004400 1.3e-19 100.1 113 48.7
Oeu024320.1 Olea europaea HOM05D000173 ORTHO05D004400 4.9e-19 98.2 106 50.0
Haze_04561 Corylus avellana HOM05D000173 ORTHO05D004400 6.5e-19 97.8 104 51.0
SEGI_01343 Sequoiadendron giganteum HOM05D000173 ORTHO05D004400 4.2e-18 95.1 109 46.8
Duzib093G1840 Durio zibethinus HOM05D000173 ORTHO05D004400 9.3e-18 94.0 106 46.2
unitig_736.g22474 Utricularia gibba HOM05D000173 ORTHO05D004400 9.3e-18 94.0 105 47.6
Hma1.2p1_0340F.1_g129760 Hydrangea macrophylla HOM05D000173 ORTHO05D004400 2.1e-17 92.8 102 50.0
AagrBONN_evm.TU.Sc2ySwM_228.3208 Anthoceros agrestis HOM05D000173 ORTHO05D004400 3.5e-17 92.0 106 47.2
Os08g0137200 Oryza sativa ssp. japonica HOM05D000173 ORTHO05D004400 4.6e-17 91.7 110 45.5
SalBow5G1565 Salvia bowleyana HOM05D000173 ORTHO05D004400 6.0e-17 91.3 106 46.2
Pp3c15_24010 Physcomitrium patens HOM05D000173 ORTHO05D004400 3.0e-16 89.0 106 45.3
Zm00001eb000800 Zea mays HOM05D000173 ORTHO05D004400 3.9e-16 88.6 110 44.5
VMungo0251G1487 Vigna mungo HOM05D000173 ORTHO05D004400 6.7e-16 87.8 107 44.9
Mapoly0063s0059 Marchantia polymorpha HOM05D000173 ORTHO05D004400 1.9e-15 86.3 115 39.1
Pp3c9_24230 Physcomitrium patens HOM05D000173 ORTHO05D004400 1.9e-15 86.3 106 43.4
ClCG06G014940 Citrullus lanatus HOM05D000173 ORTHO05D004400 2.1e-14 82.8 159 36.5
SGA_v2.0_scaffold62G21627 Striga asiatica HOM05D000173 ORTHO05D004400 2.8e-14 82.4 149 35.6
BcaC07g37216 Brassica carinata HOM05D000173 ORTHO05D023886 6.3e-14 81.3 79 83.5
SMO347G0056 Selaginella moellendorffii HOM05D000173 ORTHO05D004400 6.3e-14 81.3 106 41.5
Duzib093G1728 Durio zibethinus HOM05D000173 ORTHO05D004400 1.8e-13 79.7 107 43.9
C05p16720 Brassica napus HOM05D000173 ORTHO05D004400 1.2e-12 77.0 71 60.6
CBR_g46675 Chara braunii HOM05D000173 ORTHO05D004400 1.2e-12 77.0 118 39.8
A06p14500 Brassica napus HOM05D000173 ORTHO05D004400 5.9e-12 74.7 71 59.2
CBR_g46712 Chara braunii HOM05D000173 ORTHO05D004400 7.6e-12 74.3 118 39.0
AUR62025879 Chenopodium quinoa HOM05D000173 ORTHO05D004400 7.6e-12 74.3 95 46.3
FvH4_6g50670 Fragaria vesca HOM05D000173 ORTHO05D004400 1.3e-11 73.6 105 40.0
EL10Ac5g11421 Beta vulgaris HOM05D000173 ORTHO05D004400 5.0e-11 71.6 110 41.8
Rhsim12G0144100 Rhododendron simsii HOM05D000173 ORTHO05D004400 7.2e-10 67.8 207 33.3
Duzib150G1369 Durio zibethinus HOM05D000173 ORTHO05D004400 1.0e-08 63.9 35 74.3
A01p26470 Brassica napus HOM05D038468 ORTHO05D040216 1.3e-08 63.5 57 98.2
BraA01t02571Z Brassica rapa HOM05D038468 ORTHO05D040216 1.3e-08 63.5 57 98.2
SHI30369 Sapria himalayana HOM05D000105 ORTHO05D004400 1.3e-08 63.5 35 74.3
Ciclev10020836m.g Citrus clementina HOM05D000173 ORTHO05D004400 1.8e-08 63.2 35 68.6
Psat4g222600 Pisum sativum HOM05D000173 ORTHO05D004400 1.8e-08 63.2 35 71.4
Cre06.g249200 Chlamydomonas reinhardtii HOM05D000173 ORTHO05D004400 3.0e-08 62.4 107 39.3
BcaC04g20234 Brassica carinata HOM05D000173 ORTHO05D004400 3.9e-08 62.0 89 60.7
CSS0044381 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 3.9e-08 62.0 34 73.5
MBI12_g44816_MAGBIO Magnolia biondii HOM05D000173 ORTHO05D004400 3.9e-08 62.0 34 73.5
C09p46060 Brassica napus HOM05D000173 ORTHO05D004400 6.7e-08 61.2 83 63.9
Hund24237 Selenicereus undatus HOM05D000173 ORTHO05D004400 8.7e-08 60.8 207 27.5
Dinv07361 Davidia involucrata HOM05D000173 ORTHO05D004400 1.9e-07 59.7 38 76.3
SHI30372 Sapria himalayana HOM05D000023 ORTHO05D000014 5.7e-07 58.2 37 75.7
Glyma.15G260400 Glycine max HOM05D000173 ORTHO05D004400 9.7e-07 57.4 35 62.9
AUR62029850 Chenopodium quinoa HOM05D000173 ORTHO05D004400 2.2e-06 56.2 38 68.4


User provided reference genes

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