Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g37745 Brassica carinata HOM05D003027 ORTHO05D003455 1.1e-26 122.5 60 100.0
C04p02350 Brassica napus HOM05D003027 ORTHO05D003455 7.3e-26 119.8 60 96.7
BolC4t21881H Brassica oleracea HOM05D003027 ORTHO05D003455 7.3e-26 119.8 60 96.7
Thhalv10016317m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 7.3e-26 119.8 60 96.7
AL4G38920 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 1.6e-25 118.6 60 95.0
AT2G40950 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 1.6e-25 118.6 60 95.0
Carub.0004s2327 Capsella rubella HOM05D003027 ORTHO05D003455 1.6e-25 118.6 60 95.0
CARHR136060 Cardamine hirsuta HOM05D003027 ORTHO05D003455 1.6e-25 118.6 60 95.0
BcaC02g12742 Brassica carinata HOM05D003027 ORTHO05D003455 2.8e-25 117.9 60 93.3
BcaC02g12863 Brassica carinata HOM05D003027 ORTHO05D003455 8.0e-25 116.3 60 93.3
Sp4g23270 Schrenkiella parvula HOM05D003027 ORTHO05D003455 1.0e-24 115.9 60 91.7
C04p68700 Brassica napus HOM05D003027 ORTHO05D003455 1.4e-24 115.5 60 93.3
BolC4t28375H Brassica oleracea HOM05D003027 ORTHO05D003455 1.4e-24 115.5 60 93.3
A04p31300 Brassica napus HOM05D003027 ORTHO05D003455 3.1e-24 114.4 60 91.7
BraA04t18587Z Brassica rapa HOM05D003027 ORTHO05D003455 3.1e-24 114.4 60 91.7
BcaC04g21686 Brassica carinata HOM05D003027 ORTHO05D003455 2.0e-23 111.7 60 91.7
BcaC02g11096 Brassica carinata HOM05D003027 ORTHO05D003455 5.8e-23 110.2 57 91.2
AT3G56660 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 2.3e-19 98.2 60 76.7
Haze_20266 Corylus avellana HOM05D003027 ORTHO05D003455 3.0e-19 97.8 60 78.3
AL5G38030 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 5.0e-19 97.1 60 76.7
Cfa019972 Carpinus fangiana HOM05D003027 ORTHO05D003455 5.0e-19 97.1 60 78.3
Carub.0005s2341 Capsella rubella HOM05D003027 ORTHO05D003455 6.6e-19 96.7 60 75.0
PGR042G3138 Punica granatum HOM05D003027 ORTHO05D003455 6.6e-19 96.7 60 75.0
Aa31LG10G11460 Aethionema arabicum HOM05D003027 ORTHO05D003455 8.6e-19 96.3 60 78.3
Aa31LG3G1070 Aethionema arabicum HOM05D003027 ORTHO05D003455 8.6e-19 96.3 60 83.3
Migut.K00152 Erythranthe guttata HOM05D003027 ORTHO05D003455 1.1e-18 95.9 61 77.0
Eucgr.A02199 Eucalyptus grandis HOM05D003027 ORTHO05D003455 1.9e-18 95.1 60 80.0
FAN22G1384 Fragaria x ananassa HOM05D003027 ORTHO05D003455 1.9e-18 95.1 60 81.7
MD07G1018800 Malus domestica HOM05D003027 ORTHO05D003455 1.9e-18 95.1 60 83.3
Prupe.2G020400 Prunus persica HOM05D003027 ORTHO05D003455 1.9e-18 95.1 60 83.3
FvH4_4g26350 Fragaria vesca HOM05D003027 ORTHO05D003455 2.5e-18 94.7 60 80.0
FAN12G2249 Fragaria x ananassa HOM05D003027 ORTHO05D003455 2.5e-18 94.7 60 80.0
FAN12G3806 Fragaria x ananassa HOM05D003027 ORTHO05D003455 2.5e-18 94.7 60 80.0
CANSAT64G1028 Cannabis sativa HOM05D003027 ORTHO05D003455 3.3e-18 94.4 58 81.0
Cpa.g.sc92.68 Carica papaya HOM05D003027 ORTHO05D003455 3.3e-18 94.4 60 81.7
FAN17G2150 Fragaria x ananassa HOM05D003027 ORTHO05D003455 4.3e-18 94.0 60 78.3
Atru.chr1.1410 Acer truncatum HOM05D003027 ORTHO05D003455 5.6e-18 93.6 60 81.7
Sp5g05900 Schrenkiella parvula HOM05D003027 ORTHO05D003455 7.3e-18 93.2 60 75.0
FAN07G2582 Fragaria x ananassa HOM05D003027 ORTHO05D003455 9.5e-18 92.8 60 78.3
THA.LOC104803232 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 9.5e-18 92.8 62 79.0
Peaxi162Scf00076g00222 Petunia axillaris HOM05D003027 ORTHO05D003455 1.2e-17 92.4 60 76.7
Duzib106G1517 Durio zibethinus HOM05D003027 ORTHO05D003455 1.6e-17 92.0 60 80.0
Thhalv10005827m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 1.6e-17 92.0 60 75.0
RcHm_v2.0_Chr4g0433931 Rosa chinensis HOM05D003027 ORTHO05D003455 1.6e-17 92.0 60 81.7
COL.COLO4_19389 Corchorus olitorius HOM05D003027 ORTHO05D003455 2.1e-17 91.7 60 80.0
MELO3C009730.2 Cucumis melo HOM05D003027 ORTHO05D003455 2.1e-17 91.7 60 76.7
Lsat_1_v5_gn_5_157880 Lactuca sativa HOM05D003027 ORTHO05D003455 2.1e-17 91.7 62 71.0
Potri.016G032400 Populus trichocarpa HOM05D003027 ORTHO05D003455 2.8e-17 91.3 60 80.0
Sabra16G0035700 Salix brachista HOM05D003027 ORTHO05D003455 2.8e-17 91.3 60 80.0
THA.LOC104824380 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 2.8e-17 91.3 61 75.4
CARHR166770 Cardamine hirsuta HOM05D003027 ORTHO05D003455 3.6e-17 90.9 56 75.0
Dinv20764 Davidia involucrata HOM05D003027 ORTHO05D003455 3.6e-17 90.9 61 75.4
CsaV3_3G039880 Cucumis sativus L. HOM05D003027 ORTHO05D003455 6.2e-17 90.1 60 75.0
TWI53G2142 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 6.2e-17 90.1 60 76.7
TWI77G0499 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 6.2e-17 90.1 60 76.7
VMungo1383G0888 Vigna mungo HOM05D003027 ORTHO05D003455 6.2e-17 90.1 58 77.6
Ciclev10011169m.g Citrus clementina HOM05D003027 ORTHO05D003455 8.1e-17 89.7 60 78.3
Migut.J01624 Erythranthe guttata HOM05D003027 ORTHO05D003455 1.4e-16 89.0 60 71.7
Nitab4.5_0005963g0050 Nicotiana tabacum HOM05D003027 ORTHO05D003455 1.4e-16 89.0 60 75.0
SGA_v2.0_scaffold69G23173 Striga asiatica HOM05D003027 ORTHO05D003455 1.4e-16 89.0 61 73.8
C09p28840 Brassica napus HOM05D003027 ORTHO05D003455 1.8e-16 88.6 48 89.6
BolC9t55746H Brassica oleracea HOM05D003027 ORTHO05D003455 1.8e-16 88.6 48 89.6
Manes.08G062800 Manihot esculenta HOM05D003027 ORTHO05D003455 1.8e-16 88.6 60 73.3
CiPaw.09G050600 Carya illinoinensis HOM05D003027 ORTHO05D003455 2.3e-16 88.2 60 76.7
CiPaw.10G042900 Carya illinoinensis HOM05D003027 ORTHO05D003455 2.3e-16 88.2 60 71.7
ClCG10G016460 Citrullus lanatus HOM05D003027 ORTHO05D003455 3.1e-16 87.8 60 73.3
Cc06_g20180 Coffea canephora HOM05D003027 ORTHO05D003455 3.1e-16 87.8 61 73.8
Sed0011831 Sechium edule HOM05D003027 ORTHO05D003455 3.1e-16 87.8 60 76.7
BraA09t37858Z Brassica rapa HOM05D003027 ORTHO05D003455 4.0e-16 87.4 45 95.6
DCAR_013537 Daucus carota HOM05D003027 ORTHO05D003455 4.0e-16 87.4 60 71.7
Dinv20756 Davidia involucrata HOM05D003027 ORTHO05D003455 4.0e-16 87.4 61 73.8
Duzib128G0339 Durio zibethinus HOM05D003027 ORTHO05D003455 5.2e-16 87.0 60 76.7
PSO384G3381 Papaver somniferum HOM05D003027 ORTHO05D003455 5.2e-16 87.0 62 74.2
QL07p012799 Quercus lobata HOM05D003027 ORTHO05D003455 5.2e-16 87.0 52 76.9
CAN.G960.76 Capsicum annuum HOM05D003027 ORTHO05D003455 6.8e-16 86.7 60 73.3
COL.COLO4_26642 Corchorus olitorius HOM05D003027 ORTHO05D003455 6.8e-16 86.7 60 76.7
Gohir.A13G001500 Gossypium hirsutum HOM05D003027 ORTHO05D003455 6.8e-16 86.7 60 76.7
Gohir.D13G000900 Gossypium hirsutum HOM05D003027 ORTHO05D003455 6.8e-16 86.7 60 76.7
Gorai.013G000800 Gossypium raimondii HOM05D003027 ORTHO05D003455 6.8e-16 86.7 60 76.7
CSS0006760 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 8.9e-16 86.3 55 72.7
CSS0013065 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 8.9e-16 86.3 55 72.7
Glyma.03G123200 Glycine max HOM05D003027 ORTHO05D003455 8.9e-16 86.3 60 76.7
Lj1A1084T71 Lonicera japonica HOM05D003027 ORTHO05D003455 8.9e-16 86.3 62 74.2
QL07p012681 Quercus lobata HOM05D003027 ORTHO05D003455 8.9e-16 86.3 52 76.9
Dinv20757 Davidia involucrata HOM05D003027 ORTHO05D003455 1.2e-15 85.9 63 73.0
PSO339G5716 Papaver somniferum HOM05D003027 ORTHO05D003455 1.2e-15 85.9 63 73.0
PGSC0003DMG400007175 Solanum tuberosum HOM05D003027 ORTHO05D003455 1.2e-15 85.9 60 73.3
Glyma.19G126800 Glycine max HOM05D003027 ORTHO05D003455 2.0e-15 85.1 60 75.0
Sopen10g028950 Solanum pennellii HOM05D003027 ORTHO05D003455 2.0e-15 85.1 60 71.7
MSTRG.19782 Avicennia marina HOM05D003027 ORTHO05D003455 2.6e-15 84.7 61 72.1
CSS0031087 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 2.6e-15 84.7 61 72.1
Dinv36122 Davidia involucrata HOM05D003027 ORTHO05D003455 2.6e-15 84.7 61 73.8
ECA248G3907 Erigeron canadensis HOM05D003027 ORTHO05D003455 2.6e-15 84.7 61 70.5
SGA_v2.0_scaffold106G30539 Striga asiatica HOM05D003027 ORTHO05D003455 2.6e-15 84.7 62 75.8
GSVIVG01025788001 Vitis vinifera HOM05D003027 ORTHO05D003455 2.6e-15 84.7 59 72.9
C04p35840 Brassica napus HOM05D003027 ORTHO05D003455 4.4e-15 84.0 62 72.6
BolC4t25216H Brassica oleracea HOM05D003027 ORTHO05D003455 4.4e-15 84.0 62 72.6
HanXRQChr13g0388001 Helianthus annuus HOM05D003027 ORTHO05D003455 4.4e-15 84.0 64 67.2
Aqoxy1G00075 Aquilegia oxysepala HOM05D003027 ORTHO05D003455 5.8e-15 83.6 61 72.1
Phvul.001G119300 Phaseolus vulgaris HOM05D003027 ORTHO05D003455 5.8e-15 83.6 59 74.6
Thecc.05G123000 Theobroma cacao HOM05D003027 ORTHO05D003455 5.8e-15 83.6 60 75.0
Nitab4.5_0000869g0140 Nicotiana tabacum HOM05D003027 ORTHO05D003455 7.5e-15 83.2 60 73.3
unitig_21.g20679 Utricularia gibba HOM05D003027 ORTHO05D003455 7.5e-15 83.2 61 72.1
arahy.Tifrunner.gnm1.ann1.1QMW5J Arachis hypogaea HOM05D003027 ORTHO05D003455 1.3e-14 82.4 60 70.0
Potri.006G034500 Populus trichocarpa HOM05D003027 ORTHO05D003455 1.3e-14 82.4 61 72.1
CAN.G569.64 Capsicum annuum HOM05D003027 ORTHO05D003455 1.7e-14 82.0 60 75.0
HanXRQChr03g0061511 Helianthus annuus HOM05D003027 ORTHO05D003455 1.7e-14 82.0 66 65.2
Oeu044242.3 Olea europaea HOM05D003027 ORTHO05D003455 1.7e-14 82.0 61 72.1
Sed0023009 Sechium edule HOM05D003027 ORTHO05D003455 1.7e-14 82.0 60 66.7
arahy.Tifrunner.gnm1.ann1.470EJV Arachis hypogaea HOM05D003027 ORTHO05D003455 2.2e-14 81.6 60 70.0
EL10Ac3g07277 Beta vulgaris HOM05D003027 ORTHO05D003455 2.2e-14 81.6 61 73.8
Peaxi162Scf00003g05235 Petunia axillaris HOM05D003027 ORTHO05D003455 2.2e-14 81.6 53 75.5
Sc25g0005470 Simmondsia chinensis HOM05D003027 ORTHO05D003455 2.2e-14 81.6 59 74.6
Medtr7g088890 Medicago truncatula HOM05D003027 ORTHO05D003455 2.9e-14 81.3 50 78.0
SalBow1G6916 Salvia bowleyana HOM05D003027 ORTHO05D003455 2.9e-14 81.3 61 68.9
SalBow6G5171 Salvia bowleyana HOM05D003027 ORTHO05D003455 3.7e-14 80.9 60 65.0
MSTRG.26171 Avicennia marina HOM05D003027 ORTHO05D003455 4.9e-14 80.5 59 62.7
MSTRG.6308 Avicennia marina HOM05D003027 ORTHO05D003455 4.9e-14 80.5 61 70.5
Ca_08358_v3 Cicer arietinum L. HOM05D003027 ORTHO05D003455 4.9e-14 80.5 51 74.5
SGA_v2.0_scaffold66G22290 Striga asiatica HOM05D003027 ORTHO05D003455 4.9e-14 80.5 61 68.9
Sabra06G0023000 Salix brachista HOM05D003027 ORTHO05D003455 1.1e-13 79.3 62 72.6
unitig_744.g24169 Utricularia gibba HOM05D003027 ORTHO05D003455 1.1e-13 79.3 53 73.6
Lalb_Chr24g0400521 Lupinus albus HOM05D003027 ORTHO05D003455 1.9e-13 78.6 60 68.3
vmacro08992 Vaccinium macrocarpon HOM05D003027 ORTHO05D003455 1.9e-13 78.6 57 66.7
TWI74G0015 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 2.4e-13 78.2 60 70.0
TAR623G0586 Trochodendron aralioides HOM05D003027 ORTHO05D003455 2.4e-13 78.2 61 67.2
BraA01t04221Z Brassica rapa HOM05D003027 ORTHO05D003455 3.2e-13 77.8 61 72.1
DCAR_020597 Daucus carota HOM05D003027 ORTHO05D003455 3.2e-13 77.8 60 68.3
Lj1g0009474 Lotus japonicus HOM05D003027 ORTHO05D003455 3.2e-13 77.8 54 68.5
Nitab4.5_0004697g0100 Nicotiana tabacum HOM05D003027 ORTHO05D003455 3.2e-13 77.8 60 66.7
TPR.G22687 Trifolium pratense HOM05D003027 ORTHO05D003455 3.2e-13 77.8 51 72.5
AT3G10800 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 4.1e-13 77.4 61 68.9
BcaB04g21174 Brassica carinata HOM05D003027 ORTHO05D003455 4.1e-13 77.4 61 70.5
A09p34290 Brassica napus HOM05D003027 ORTHO05D003455 4.1e-13 77.4 61 70.5
BolC1t05352H Brassica oleracea HOM05D003027 ORTHO05D003455 4.1e-13 77.4 61 70.5
BraA09t38974Z Brassica rapa HOM05D003027 ORTHO05D003455 4.1e-13 77.4 61 70.5
HPP92_002082 Vanilla planifolia HOM05D003027 ORTHO05D003455 4.1e-13 77.4 58 67.2
Zm00001eb110370 Zea mays HOM05D003027 ORTHO05D003455 4.1e-13 77.4 57 70.2
Carub.0003s1003 Capsella rubella HOM05D003027 ORTHO05D003455 5.4e-13 77.0 61 68.9
Thhalv10020207m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 5.4e-13 77.0 61 70.5
AL3G22300 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 7.1e-13 76.6 61 68.9
BcaC02g09858 Brassica carinata HOM05D003027 ORTHO05D003455 1.2e-12 75.9 50 76.0
Lalb_Chr14g0365581 Lupinus albus HOM05D003027 ORTHO05D003455 1.2e-12 75.9 60 65.0
Ah.13g077130 Amaranthus hybridus HOM05D003027 ORTHO05D003455 1.6e-12 75.5 63 68.3
CARHR085360 Cardamine hirsuta HOM05D003027 ORTHO05D003455 1.6e-12 75.5 61 67.2
Os05g0411300 Oryza sativa ssp. japonica HOM05D003027 ORTHO05D003455 2.1e-12 75.1 58 65.5
Zm00001eb288060 Zea mays HOM05D003027 ORTHO05D003455 2.7e-12 74.7 58 63.8
Aa31LG3G3720 Aethionema arabicum HOM05D003027 ORTHO05D003455 3.5e-12 74.3 60 68.3
BcaB02g08358 Brassica carinata HOM05D003027 ORTHO05D003455 3.5e-12 74.3 62 67.7
Ah.04g150710 Amaranthus hybridus HOM05D003027 ORTHO05D003455 6.0e-12 73.6 62 67.7
MBI19_g04333_MAGBIO Magnolia biondii HOM05D003027 ORTHO05D003455 1.3e-11 72.4 62 64.5
Os07g0644100 Oryza sativa ssp. japonica HOM05D003027 ORTHO05D003455 1.3e-11 72.4 57 66.7
Lj2A408G49 Lonicera japonica HOM05D003027 ORTHO05D003455 1.7e-11 72.0 61 63.9
THA.LOC104816495 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 1.7e-11 72.0 60 65.0
C04p20520 Brassica napus HOM05D003027 ORTHO05D041698 3.0e-11 71.2 37 89.2
BolC4t23577H Brassica oleracea HOM05D003027 ORTHO05D041698 3.0e-11 71.2 37 89.2
Sp3g09120 Schrenkiella parvula HOM05D003027 ORTHO05D003455 3.0e-11 71.2 61 67.2
Hund24551 Selenicereus undatus HOM05D003027 ORTHO05D003455 3.0e-11 71.2 61 67.2
ATR0307G054 Amborella trichopoda HOM05D003027 ORTHO05D003455 6.6e-11 70.1 61 63.9
Actinidia17700 Actinidia chinensis HOM05D003027 ORTHO05D003455 1.1e-10 69.3 61 63.9
SEGI_25646 Sequoiadendron giganteum HOM05D003027 ORTHO05D003455 2.5e-10 68.2 56 62.5
Lalb_Chr22g0357801 Lupinus albus HOM05D003027 ORTHO05D003455 5.6e-10 67.0 60 61.7
Sopen04g025410 Solanum pennellii HOM05D003027 ORTHO05D003455 1.2e-09 65.9 57 64.9
Nitab4.5_0000123g0440 Nicotiana tabacum HOM05D003027 ORTHO05D003455 1.6e-09 65.5 60 60.0
CDE08G1650 Ceratophyllum demersum HOM05D003027 ORTHO05D003455 2.8e-09 64.7 56 62.5
Sopen04g022340 Solanum pennellii HOM05D003027 ORTHO05D003455 3.6e-09 64.3 57 63.2
Psat0s1940g0120 Pisum sativum HOM05D003027 ORTHO05D003455 4.7e-09 63.9 43 72.1
PGSC0003DMG400039820 Solanum tuberosum HOM05D003027 ORTHO05D003455 6.2e-09 63.5 56 60.7
Solyc04g056490.3 Solanum lycopersicum HOM05D003027 ORTHO05D003455 8.1e-09 63.2 57 63.2
PGSC0003DMG400034669 Solanum tuberosum HOM05D003027 ORTHO05D003455 1.4e-08 62.4 56 58.9
CDE08G0069 Ceratophyllum demersum HOM05D003027 ORTHO05D003455 1.8e-08 62.0 63 57.1
Hma1.2p1_1246F.1_g270160 Hydrangea macrophylla HOM05D003027 ORTHO05D003455 4.0e-08 60.8 38 78.9
A04p03460 Brassica napus HOM05D003027 ORTHO05D003455 5.2e-08 60.5 61 60.7
BraA04t16091Z Brassica rapa HOM05D003027 ORTHO05D003455 5.2e-08 60.5 61 60.7
Solyc04g051040.1 Solanum lycopersicum HOM05D003027 ORTHO05D003455 1.2e-07 59.3 57 61.4
Solyc04g051060.2 Solanum lycopersicum HOM05D003027 ORTHO05D003455 1.2e-07 59.3 53 62.3
Pp3c3_16820 Physcomitrium patens HOM05D003027 ORTHO05D003455 1.5e-07 58.9 52 59.6
Mapoly0130s0030 Marchantia polymorpha HOM05D003027 ORTHO05D003455 4.4e-07 57.4 61 52.5
AUR62018385 Chenopodium quinoa HOM05D003027 ORTHO05D003455 5.8e-07 57.0 41 70.7
Sopen04g025360 Solanum pennellii HOM05D003027 ORTHO05D003455 7.6e-07 56.6 56 57.1
Manes.09G000300 Manihot esculenta HOM05D003027 ORTHO05D003455 9.9e-07 56.2 60 56.7
PGSC0003DMG400044241 Solanum tuberosum HOM05D003027 ORTHO05D003455 2.2e-06 55.1 49 63.3
HPP92_002076 Vanilla planifolia HOM05D003027 ORTHO05D003455 3.7e-06 54.3 41 63.4
Pp3c13_15030 Physcomitrium patens HOM05D003027 ORTHO05D003455 4.9e-06 53.9 62 53.2
PGSC0003DMG400044159 Solanum tuberosum HOM05D003027 ORTHO05D003455 6.4e-06 53.5 37 64.9


User provided reference genes

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