Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 2.0e-152 542.3 264 100.0
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 2.0e-152 542.3 264 100.0
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 7.6e-152 540.4 264 99.6
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 3.2e-150 535.0 267 98.5
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 1.1e-147 526.6 264 97.0
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 4.0e-137 491.5 258 91.1
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 7.6e-136 487.3 268 91.4
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 4.9e-135 484.6 258 91.1
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 4.6e-133 478.0 260 90.0
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 7.9e-133 477.2 260 90.0
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 7.9e-133 477.2 260 90.0
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 1.0e-132 476.9 260 90.0
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 4.8e-130 468.0 263 88.2
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 1.1e-129 466.8 261 86.6
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 9.0e-129 463.8 261 86.6
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 2.2e-127 459.1 254 87.8
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 3.5e-125 451.8 256 85.5
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 1.8e-124 449.5 253 85.4
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 6.7e-124 447.6 253 85.4
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 2.5e-123 445.7 259 83.4
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 5.7e-123 444.5 253 85.0
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 1.9e-118 429.5 257 80.2
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 1.4e-108 396.7 254 73.2
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 1.7e-106 389.8 256 71.5
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 6.3e-106 387.9 259 70.7
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 6.3e-106 387.9 259 70.7
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 6.3e-106 387.9 269 69.9
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 6.3e-106 387.9 256 72.3
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 5.3e-105 384.8 256 69.9
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 9.1e-105 384.0 253 70.4
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 1.2e-104 383.6 256 69.9
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 3.5e-104 382.1 257 70.8
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 4.5e-104 381.7 257 70.4
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 4.5e-104 381.7 253 70.4
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 4.5e-104 381.7 257 71.2
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 7.7e-104 380.9 256 71.5
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 7.7e-104 380.9 253 70.4
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 1.0e-103 380.6 256 69.9
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 1.7e-103 379.8 257 70.8
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 2.2e-103 379.4 258 69.4
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 3.8e-103 378.6 256 69.9
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 5.0e-103 378.3 256 69.5
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 5.0e-103 378.3 266 67.7
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 5.0e-103 378.3 255 69.4
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 5.0e-103 378.3 261 68.6
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 8.5e-103 377.5 257 68.1
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 8.5e-103 377.5 257 69.3
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 4.2e-102 375.2 256 69.5
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 4.2e-102 375.2 275 65.8
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 4.2e-102 375.2 257 68.5
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 4.2e-102 375.2 259 68.0
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 4.2e-102 375.2 255 70.2
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 5.5e-102 374.8 258 68.2
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 7.2e-102 374.4 256 69.1
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 2.1e-101 372.9 256 68.8
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 2.7e-101 372.5 265 67.2
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 2.7e-101 372.5 257 68.1
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 2.7e-101 372.5 258 67.8
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 3.6e-101 372.1 256 68.8
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 1.4e-100 370.2 257 68.5
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 1.4e-100 370.2 257 67.3
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.3e-100 369.4 256 68.8
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 2.3e-100 369.4 256 67.2
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 3.0e-100 369.0 255 68.6
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 4.0e-100 368.6 261 67.0
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 5.2e-100 368.2 256 68.0
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 8.8e-100 367.5 256 67.6
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 1.1e-99 367.1 267 65.2
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.5e-99 366.7 256 68.4
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 2.0e-99 366.3 256 67.6
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.0e-99 366.3 256 68.0
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 2.6e-99 365.9 255 71.0
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 2.6e-99 365.9 250 68.8
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 2.6e-99 365.9 254 66.1
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 4.4e-99 365.2 256 68.0
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 7.5e-99 364.4 259 66.0
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 9.7e-99 364.0 265 65.7
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 1.3e-98 363.6 256 68.0
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 2.2e-98 362.8 262 67.6
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 6.3e-98 361.3 258 65.9
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 8.2e-98 360.9 273 63.4
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 3.1e-97 359.0 256 67.6
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 5.3e-97 358.2 256 68.0
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 5.3e-97 358.2 256 65.6
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 9.1e-97 357.5 255 65.9
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 9.1e-97 357.5 255 65.9
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.2e-96 357.1 255 65.9
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 4.5e-96 355.1 269 62.8
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 5.9e-96 354.8 262 63.4
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 5.9e-96 354.8 289 60.9
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 7.7e-96 354.4 267 62.9
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 7.7e-96 354.4 263 65.0
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 1.0e-95 354.0 258 67.1
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 1.7e-95 353.2 261 63.2
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 3.8e-95 352.1 316 56.3
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 5.0e-95 351.7 262 64.5
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 6.5e-95 351.3 256 66.0
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 1.1e-94 350.5 265 63.4
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 1.5e-94 350.1 262 62.2
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 1.9e-94 349.7 253 63.2
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 2.5e-94 349.4 263 65.0
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 2.1e-93 346.3 251 65.3
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 2.7e-93 345.9 257 64.6
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 1.4e-92 343.6 259 62.9
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 1.4e-92 343.6 254 62.2
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 1.4e-92 343.6 257 65.8
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 3.4e-91 339.0 259 61.8
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 8.3e-90 334.3 256 60.9
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 8.3e-90 334.3 258 60.1
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 9.1e-89 330.9 212 71.7
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 7.7e-88 327.8 237 67.9
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 1.7e-87 326.6 213 70.9
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 2.9e-87 325.9 216 70.4
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 1.6e-85 320.1 271 56.5
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 4.0e-84 315.5 214 68.7
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 9.8e-83 310.8 211 71.6
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 6.3e-82 308.1 214 66.8
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 5.4e-81 305.1 243 58.8
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 7.7e-80 301.2 236 62.7
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 3.3e-78 295.8 195 71.8
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 9.5e-78 294.3 195 70.8
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 1.8e-76 290.0 231 56.7
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 1.5e-75 287.0 252 54.4
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.6e-75 286.2 195 68.7
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 5.7e-75 285.0 193 68.4
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 1.3e-74 283.9 251 54.2
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 6.4e-74 281.6 204 66.7
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 1.4e-73 280.4 193 69.9
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 4.1e-73 278.9 184 72.3
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 6.6e-71 271.6 259 51.7
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 1.8e-68 263.5 227 59.5
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 1.8e-68 263.5 308 48.4
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 3.7e-66 255.8 170 71.8
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.2e-65 252.7 368 42.4
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 1.1e-60 237.7 182 64.3
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.6e-59 233.0 239 48.5
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 2.4e-57 226.5 133 81.2
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.1e-56 223.4 270 48.9
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.1e-54 217.6 204 52.5
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.0e-51 206.8 179 54.7
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 3.7e-50 202.6 209 50.7
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 5.6e-46 188.7 178 54.5
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 4.0e-44 182.6 146 60.3
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 6.8e-44 181.8 124 68.5
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 3.2e-41 172.9 314 33.4
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 7.1e-41 171.8 126 65.1
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 3.5e-40 169.5 250 34.8
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 5.8e-35 152.1 104 68.3
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 9.9e-35 151.4 92 71.7
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 6.4e-34 148.7 274 35.0
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 3.0e-31 139.8 97 67.0
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.5e-30 137.5 172 41.3
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.1e-28 131.3 123 53.7
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.2e-26 123.6 165 40.6
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 3.2e-25 119.8 167 43.7
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 2.4e-20 103.6 78 59.0
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 2.6e-19 100.1 55 85.5
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.4e-19 99.8 118 42.4
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 1.7e-18 97.4 52 86.5
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 1.7e-18 97.4 52 86.5
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.1e-16 90.5 84 53.6
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 4.3e-14 82.8 61 65.6
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 8.2e-13 78.6 72 52.8
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 3.4e-11 73.2 56 55.4
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 1.9e-09 67.4 36 91.7
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 1.0e-07 61.6 40 62.5
Duzib133G1297 Durio zibethinus HOM05D004412 ORTHO05D005316 5.7e-06 55.8 34 64.7


User provided reference genes

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