Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g36860 Brassica carinata HOM05D003747 ORTHO05D016772 1.7e-60 235.7 109 100.0
C08p01770 Brassica napus HOM05D003747 ORTHO05D016772 6.3e-60 233.8 109 99.1
BolC8t46977H Brassica oleracea HOM05D003747 ORTHO05D016772 6.3e-60 233.8 109 99.1
Carub.0001s0442 Capsella rubella HOM05D003747 ORTHO05D005080 3.2e-48 194.9 102 87.3
Sp1g04000 Schrenkiella parvula HOM05D003747 ORTHO05D005080 3.2e-48 194.9 102 87.3
SpUn0024_0140 Schrenkiella parvula HOM05D003747 ORTHO05D005080 3.2e-48 194.9 102 87.3
AL1G14910 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 6.1e-47 190.7 102 85.3
CARHR004600 Cardamine hirsuta HOM05D003747 ORTHO05D005080 6.1e-47 190.7 102 85.3
BcaNung05933 Brassica carinata HOM05D003747 ORTHO05D005080 3.0e-46 188.3 101 85.1
AT1G05150 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 8.8e-46 186.8 102 83.3
CARHR126280 Cardamine hirsuta HOM05D003747 ORTHO05D005080 4.4e-45 184.5 102 79.4
Thhalv10017699m.g Eutrema salsugineum HOM05D003747 ORTHO05D005080 5.7e-45 184.1 102 80.4
THA.LOC104806907 Tarenaya hassleriana HOM05D003747 ORTHO05D005080 2.8e-44 181.8 102 80.4
AT2G32450 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 1.8e-43 179.1 102 77.5
Aa31LG1G19600 Aethionema arabicum HOM05D003747 ORTHO05D005080 3.1e-43 178.3 102 78.4
Carub.0004s1380 Capsella rubella HOM05D003747 ORTHO05D005080 5.3e-43 177.6 102 76.5
Sp4g14820 Schrenkiella parvula HOM05D003747 ORTHO05D005080 1.6e-42 176.0 102 74.5
A10p03680 Brassica napus HOM05D003747 ORTHO05D005080 2.6e-42 175.3 92 87.0
BraA10t42641Z Brassica rapa HOM05D003747 ORTHO05D005080 2.6e-42 175.3 92 87.0
C05p03390 Brassica napus HOM05D003747 ORTHO05D005080 4.5e-42 174.5 94 84.0
Aa31LG5G4820 Aethionema arabicum HOM05D003747 ORTHO05D005080 5.9e-42 174.1 102 76.5
COL.COLO4_26196 Corchorus olitorius HOM05D003747 ORTHO05D005080 1.7e-41 172.6 99 77.8
MD15G1017300 Malus domestica HOM05D003747 ORTHO05D005080 1.7e-41 172.6 99 78.8
AL4G27840 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 3.8e-41 171.4 98 76.5
Atru.chr13.357 Acer truncatum HOM05D003747 ORTHO05D005080 8.5e-41 170.2 99 75.8
Thecc.08G037800 Theobroma cacao HOM05D003747 ORTHO05D005080 8.5e-41 170.2 99 75.8
Duzib041G0542 Durio zibethinus HOM05D003747 ORTHO05D005080 1.9e-40 169.1 99 75.8
Manes.05G152300 Manihot esculenta HOM05D003747 ORTHO05D005080 1.9e-40 169.1 96 77.1
Prupe.1G370600 Prunus persica HOM05D003747 ORTHO05D005080 4.2e-40 167.9 99 74.7
Ciclev10000324m.g Citrus clementina HOM05D003747 ORTHO05D005080 5.5e-40 167.5 96 76.0
Gohir.D01G100800 Gossypium hirsutum HOM05D003747 ORTHO05D005080 5.5e-40 167.5 99 73.7
Gorai.002G125100 Gossypium raimondii HOM05D003747 ORTHO05D005080 5.5e-40 167.5 99 73.7
FAN27G0346 Fragaria x ananassa HOM05D003747 ORTHO05D005080 7.2e-40 167.2 96 77.1
BolC5t29116H Brassica oleracea HOM05D003747 ORTHO05D005080 9.4e-40 166.8 90 83.3
FvH4_2g39050 Fragaria vesca HOM05D003747 ORTHO05D005080 9.4e-40 166.8 96 77.1
RcHm_v2.0_Chr6g0302151 Rosa chinensis HOM05D003747 ORTHO05D005080 1.2e-39 166.4 99 72.7
Gohir.A01G113100 Gossypium hirsutum HOM05D003747 ORTHO05D005080 1.6e-39 166.0 100 72.0
Cfa013905 Carpinus fangiana HOM05D003747 ORTHO05D005080 2.7e-39 165.2 99 72.7
QL02p010745 Quercus lobata HOM05D003747 ORTHO05D005080 2.7e-39 165.2 99 74.7
ClCG05G018570 Citrullus lanatus HOM05D003747 ORTHO05D005080 3.6e-39 164.9 96 76.0
FAN20G0205 Fragaria x ananassa HOM05D003747 ORTHO05D005080 3.6e-39 164.9 96 76.0
MD08G1018000 Malus domestica HOM05D003747 ORTHO05D005080 3.6e-39 164.9 97 77.3
Cpa.g.sc140.21 Carica papaya HOM05D003747 ORTHO05D005080 4.7e-39 164.5 96 75.0
Haze_22585 Corylus avellana HOM05D003747 ORTHO05D005080 6.1e-39 164.1 99 72.7
Potri.002G027900 Populus trichocarpa HOM05D003747 ORTHO05D005080 6.1e-39 164.1 96 76.0
CiPaw.08G062900 Carya illinoinensis HOM05D003747 ORTHO05D005080 8.0e-39 163.7 99 73.7
FAN15G1267 Fragaria x ananassa HOM05D003747 ORTHO05D005080 8.0e-39 163.7 96 75.0
CiPaw.07G154200 Carya illinoinensis HOM05D003747 ORTHO05D005080 1.0e-38 163.3 99 73.7
Manes.18G017800 Manihot esculenta HOM05D003747 ORTHO05D005080 1.0e-38 163.3 96 75.0
Gohir.D05G191500 Gossypium hirsutum HOM05D003747 ORTHO05D005080 1.8e-38 162.5 99 72.7
Gorai.009G196800 Gossypium raimondii HOM05D003747 ORTHO05D005080 1.8e-38 162.5 99 72.7
Glyma.10G132800 Glycine max HOM05D003747 ORTHO05D005080 3.0e-38 161.8 98 72.4
Gohir.A05G188400 Gossypium hirsutum HOM05D003747 ORTHO05D005080 3.0e-38 161.8 99 72.7
Potri.005G234900 Populus trichocarpa HOM05D003747 ORTHO05D005080 4.0e-38 161.4 95 75.8
Lj6g0007889 Lotus japonicus HOM05D003747 ORTHO05D005080 6.7e-38 160.6 99 70.7
Ca_11895_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 1.2e-37 159.8 95 72.6
Ca_30287_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 1.2e-37 159.8 95 72.6
Glyma.20G084100 Glycine max HOM05D003747 ORTHO05D005080 2.0e-37 159.1 98 71.4
Sabra05G0181100 Salix brachista HOM05D003747 ORTHO05D005080 2.0e-37 159.1 96 72.9
CsaV3_1G045450 Cucumis sativus L. HOM05D003747 ORTHO05D005080 2.6e-37 158.7 95 74.7
CsaV3_UNG233290 Cucumis sativus L. HOM05D003747 ORTHO05D005080 2.6e-37 158.7 95 74.7
Sabra02G0022000 Salix brachista HOM05D003747 ORTHO05D005080 2.6e-37 158.7 96 74.0
Lalb_Chr03g0036971 Lupinus albus HOM05D003747 ORTHO05D005080 4.4e-37 157.9 98 71.4
VMungo0720G2667 Vigna mungo HOM05D003747 ORTHO05D005080 7.5e-37 157.1 98 70.4
MELO3C024651.2 Cucumis melo HOM05D003747 ORTHO05D005080 9.7e-37 156.8 95 73.7
Phvul.007G231400 Phaseolus vulgaris HOM05D003747 ORTHO05D005080 1.3e-36 156.4 98 69.4
PGR083G0723 Punica granatum HOM05D003747 ORTHO05D005080 1.3e-36 156.4 96 71.9
Solyc04g081050.2 Solanum lycopersicum HOM05D003747 ORTHO05D005080 1.3e-36 156.4 95 73.7
Sopen04g034670 Solanum pennellii HOM05D003747 ORTHO05D005080 1.3e-36 156.4 95 73.7
TAR628G0607 Trochodendron aralioides HOM05D003747 ORTHO05D005080 1.7e-36 156.0 95 72.6
CANSAT25G1149 Cannabis sativa HOM05D003747 ORTHO05D005080 4.8e-36 154.5 96 70.8
Eucgr.F01620 Eucalyptus grandis HOM05D003747 ORTHO05D005080 4.8e-36 154.5 95 71.6
Medtr1g045490 Medicago truncatula HOM05D003747 ORTHO05D005080 4.8e-36 154.5 94 70.2
CSS0007586 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 1.4e-35 152.9 102 67.6
CSS0029452 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 1.4e-35 152.9 102 67.6
Duzib116G0012 Durio zibethinus HOM05D003747 ORTHO05D005080 1.4e-35 152.9 99 69.7
Nitab4.5_0012730g0020 Nicotiana tabacum HOM05D003747 ORTHO05D005080 1.4e-35 152.9 95 71.6
PGSC0003DMG400003764 Solanum tuberosum HOM05D003747 ORTHO05D005080 1.4e-35 152.9 95 72.6
Aqoxy6G02380 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 1.8e-35 152.5 95 71.6
Hma1.2p1_0773F.1_g216160 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 1.8e-35 152.5 95 71.6
MBI05_g04846_MAGBIO Magnolia biondii HOM05D003747 ORTHO05D005080 1.8e-35 152.5 95 69.5
PSO541G0570 Papaver somniferum HOM05D003747 ORTHO05D005080 1.8e-35 152.5 95 72.6
Rhsim06G0026300 Rhododendron simsii HOM05D003747 ORTHO05D005080 1.8e-35 152.5 95 71.6
HanXRQChr05g0156281 Helianthus annuus HOM05D003747 ORTHO05D005080 2.4e-35 152.1 96 71.9
DCAR_022445 Daucus carota HOM05D003747 ORTHO05D005080 3.1e-35 151.8 95 72.6
Dinv31811 Davidia involucrata HOM05D003747 ORTHO05D005080 3.1e-35 151.8 101 70.3
PSO675G4036 Papaver somniferum HOM05D003747 ORTHO05D005080 4.1e-35 151.4 95 71.6
TWI12G0622 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 4.1e-35 151.4 96 67.7
HanXRQChr09g0269391 Helianthus annuus HOM05D003747 ORTHO05D005080 5.3e-35 151.0 95 71.6
Peaxi162Scf00287g00127 Petunia axillaris HOM05D003747 ORTHO05D005080 5.3e-35 151.0 95 72.6
TAR376G0166 Trochodendron aralioides HOM05D003747 ORTHO05D005080 5.3e-35 151.0 95 70.5
Sed0022188 Sechium edule HOM05D003747 ORTHO05D005080 7.0e-35 150.6 96 70.8
TWI56G0727 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 1.2e-34 149.8 96 66.7
CAN.G851.8 Capsicum annuum HOM05D003747 ORTHO05D005080 1.6e-34 149.4 95 69.5
Lalb_Chr19g0128511 Lupinus albus HOM05D003747 ORTHO05D005080 1.6e-34 149.4 93 71.0
TPR.G16935 Trifolium pratense HOM05D003747 ORTHO05D005080 1.6e-34 149.4 91 70.3
Dinv39487 Davidia involucrata HOM05D003747 ORTHO05D005080 2.0e-34 149.1 89 74.2
Hma1.2p1_1386F.1_g279810 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 2.0e-34 149.1 103 68.0
Cc10_g02100 Coffea canephora HOM05D003747 ORTHO05D005080 4.5e-34 147.9 101 67.3
Lj4C29T2 Lonicera japonica HOM05D003747 ORTHO05D005080 4.5e-34 147.9 95 69.5
ECA246G3046 Erigeron canadensis HOM05D003747 ORTHO05D005080 7.7e-34 147.1 98 67.3
Psat0s1558g0040 Pisum sativum HOM05D003747 ORTHO05D005080 1.0e-33 146.7 101 65.3
GSVIVG01009826001 Vitis vinifera HOM05D003747 ORTHO05D005080 1.3e-33 146.4 89 73.0
Peaxi162Scf00640g00034 Petunia axillaris HOM05D003747 ORTHO05D005080 2.2e-33 145.6 95 67.4
Nitab4.5_0004368g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 2.9e-33 145.2 95 66.3
Oeu046243.1 Olea europaea HOM05D003747 ORTHO05D005080 2.9e-33 145.2 95 69.5
Oeu046245.1 Olea europaea HOM05D003747 ORTHO05D005080 2.9e-33 145.2 95 69.5
Oeu047748.1 Olea europaea HOM05D003747 ORTHO05D005080 8.5e-33 143.7 95 67.4
arahy.Tifrunner.gnm1.ann1.K8KKRC Arachis hypogaea HOM05D003747 ORTHO05D005080 1.5e-32 142.9 87 72.4
arahy.Tifrunner.gnm1.ann1.VC055M Arachis hypogaea HOM05D003747 ORTHO05D005080 1.5e-32 142.9 87 72.4
Nn5g29219 Nelumbo nucifera HOM05D003747 ORTHO05D005080 1.5e-32 142.9 95 65.3
Nitab4.5_0000352g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 1.9e-32 142.5 95 66.3
MSTRG.25220 Avicennia marina HOM05D003747 ORTHO05D005080 2.5e-32 142.1 99 63.6
Lsat_1_v5_gn_4_116240 Lactuca sativa HOM05D003747 ORTHO05D005080 2.5e-32 142.1 102 64.7
HPP92_027211 Vanilla planifolia HOM05D003747 ORTHO05D016772 4.2e-32 141.4 95 65.3
Os03g0263900 Oryza sativa ssp. japonica HOM05D003747 ORTHO05D005080 2.7e-31 138.7 97 61.9
Zm00001eb011630 Zea mays HOM05D003747 ORTHO05D005080 8.0e-31 137.1 97 61.9
Ah.05g171920 Amaranthus hybridus HOM05D003747 ORTHO05D005080 1.8e-30 136.0 97 66.0
Lsat_1_v5_gn_5_26081 Lactuca sativa HOM05D003747 ORTHO05D005080 4.0e-30 134.8 99 65.7
MSTRG.24265 Avicennia marina HOM05D003747 ORTHO05D005080 1.2e-29 133.3 91 63.7
EL10Ac1g00554 Beta vulgaris HOM05D003747 ORTHO05D005080 3.4e-29 131.7 97 64.9
Sc02g0005230 Simmondsia chinensis HOM05D003747 ORTHO05D005080 7.5e-29 130.6 90 68.9
Migut.N03134 Erythranthe guttata HOM05D003747 ORTHO05D005080 9.8e-29 130.2 91 62.6
AUR62014428 Chenopodium quinoa HOM05D003747 ORTHO05D005080 2.2e-28 129.0 91 67.0
AUR62034569 Chenopodium quinoa HOM05D003747 ORTHO05D005080 2.2e-28 129.0 91 67.0
ATR0620G056 Amborella trichopoda HOM05D003747 ORTHO05D005080 2.8e-28 128.6 99 61.6
SEGI_05010 Sequoiadendron giganteum HOM05D003747 ORTHO05D005080 3.7e-28 128.3 91 64.8
SGA_v2.0_scaffold326G48749 Striga asiatica HOM05D003747 ORTHO05D005080 4.8e-28 127.9 91 62.6
TAR628G1670 Trochodendron aralioides HOM05D003747 ORTHO05D016772 1.4e-27 126.3 81 69.1
BcaC05g24429 Brassica carinata HOM05D003747 ORTHO05D016772 5.4e-27 124.4 71 78.9
Rhsim06G0014300 Rhododendron simsii HOM05D003747 ORTHO05D000001 7.7e-26 120.6 77 68.8
unitig_746.g26812 Utricularia gibba HOM05D003747 ORTHO05D016772 1.0e-25 120.2 91 57.1
Aqoxy5G01483 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 2.3e-25 119.0 95 58.9
Zm00001eb398060 Zea mays HOM05D003747 ORTHO05D005080 2.9e-25 118.6 77 67.5
unitig_899.g15538 Utricularia gibba HOM05D003747 ORTHO05D016772 3.8e-25 118.2 99 54.5
SHI08097 Sapria himalayana HOM05D003747 ORTHO05D005080 1.9e-24 115.9 94 56.4
Mapoly0016s0016 Marchantia polymorpha HOM05D003747 ORTHO05D005080 3.3e-24 115.2 95 54.7
CSS0038687 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 2.1e-23 112.5 77 68.8
Rhsim06G0013900 Rhododendron simsii HOM05D003747 ORTHO05D005080 8.0e-23 110.5 64 75.0
Rhsim06G0014800 Rhododendron simsii HOM05D003747 ORTHO05D005080 8.0e-23 110.5 64 75.0
MBI16_g07670_MAGBIO Magnolia biondii HOM05D003747 ORTHO05D005080 8.9e-22 107.1 79 62.0
SMO118G0420 Selaginella moellendorffii HOM05D003747 ORTHO05D005080 1.2e-21 106.7 87 56.3
TAR376G0643 Trochodendron aralioides HOM05D003747 ORTHO05D005080 1.2e-21 106.7 99 53.5
AagrBONN_evm.TU.Sc2ySwM_228.5529 Anthoceros agrestis HOM05D003747 ORTHO05D005080 3.4e-21 105.1 84 53.6
SMO331G0035 Selaginella moellendorffii HOM05D003747 ORTHO05D005080 2.8e-20 102.1 81 56.8
Pp3c2_26690 Physcomitrium patens HOM05D003747 ORTHO05D005080 3.7e-20 101.7 82 54.9
Pp3c1_8310 Physcomitrium patens HOM05D003747 ORTHO05D005080 5.4e-19 97.8 83 54.2
Cc10_g07350 Coffea canephora HOM05D003747 ORTHO05D005080 4.5e-18 94.7 76 61.8
CBR_g21825 Chara braunii HOM05D003747 ORTHO05D005080 3.6e-15 85.1 80 50.0
HPP92_006843 Vanilla planifolia HOM05D003747 ORTHO05D005080 1.0e-14 83.6 76 50.0
CDE10G1342 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 1.4e-11 73.2 47 66.0
CDE02G1942 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 8.6e-09 63.9 61 45.9
BolC5t29114H Brassica oleracea HOM05D003747 ORTHO05D016772 5.6e-08 61.2 71 47.9
Actinidia15389 Actinidia chinensis HOM05D003747 ORTHO05D005080 3.1e-06 55.5 29 75.9


User provided reference genes

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