Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g36859 Brassica carinata HOM05D003747 ORTHO05D016772 1.9e-44 182.2 94 100.0
C08p01770 Brassica napus HOM05D003747 ORTHO05D016772 1.4e-39 166.0 107 84.1
BolC8t46977H Brassica oleracea HOM05D003747 ORTHO05D016772 2.6e-38 161.8 106 84.0
A10p03680 Brassica napus HOM05D003747 ORTHO05D005080 3.3e-25 118.2 114 63.2
BraA10t42641Z Brassica rapa HOM05D003747 ORTHO05D005080 3.3e-25 118.2 114 63.2
BcaNung05933 Brassica carinata HOM05D003747 ORTHO05D005080 1.6e-24 115.9 113 61.9
C05p03390 Brassica napus HOM05D003747 ORTHO05D005080 1.6e-24 115.9 113 61.9
BolC5t29116H Brassica oleracea HOM05D003747 ORTHO05D005080 1.6e-24 115.9 113 61.9
Sp1g04000 Schrenkiella parvula HOM05D003747 ORTHO05D005080 3.7e-24 114.8 114 60.5
SpUn0024_0140 Schrenkiella parvula HOM05D003747 ORTHO05D005080 3.7e-24 114.8 114 60.5
Carub.0001s0442 Capsella rubella HOM05D003747 ORTHO05D005080 3.1e-23 111.7 114 60.5
CARHR004600 Cardamine hirsuta HOM05D003747 ORTHO05D005080 4.0e-23 111.3 117 58.1
AL1G14910 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 5.3e-23 110.9 114 59.6
AT1G05150 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 1.2e-22 109.8 114 58.8
Carub.0004s1380 Capsella rubella HOM05D003747 ORTHO05D005080 2.6e-22 108.6 116 56.9
Aa31LG1G19600 Aethionema arabicum HOM05D003747 ORTHO05D005080 5.8e-22 107.5 116 56.0
Thhalv10017699m.g Eutrema salsugineum HOM05D003747 ORTHO05D005080 7.6e-22 107.1 116 56.9
AT2G32450 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 1.3e-21 106.3 116 56.0
THA.LOC104806907 Tarenaya hassleriana HOM05D003747 ORTHO05D005080 2.2e-21 105.5 116 56.0
CARHR126280 Cardamine hirsuta HOM05D003747 ORTHO05D005080 2.9e-21 105.1 116 56.0
AL4G27840 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 1.1e-20 103.2 116 54.3
COL.COLO4_26196 Corchorus olitorius HOM05D003747 ORTHO05D005080 1.1e-20 103.2 116 53.4
Sabra05G0181100 Salix brachista HOM05D003747 ORTHO05D005080 1.4e-20 102.8 116 53.4
Haze_22585 Corylus avellana HOM05D003747 ORTHO05D005080 3.2e-20 101.7 116 53.4
FAN27G0346 Fragaria x ananassa HOM05D003747 ORTHO05D005080 3.2e-20 101.7 117 52.1
GSVIVG01009826001 Vitis vinifera HOM05D003747 ORTHO05D005080 3.2e-20 101.7 116 54.3
Aa31LG5G4820 Aethionema arabicum HOM05D003747 ORTHO05D005080 7.1e-20 100.5 117 53.8
Cfa013905 Carpinus fangiana HOM05D003747 ORTHO05D005080 9.3e-20 100.1 116 52.6
FAN15G1267 Fragaria x ananassa HOM05D003747 ORTHO05D005080 9.3e-20 100.1 117 51.3
Thecc.08G037800 Theobroma cacao HOM05D003747 ORTHO05D005080 9.3e-20 100.1 116 52.6
FvH4_2g39050 Fragaria vesca HOM05D003747 ORTHO05D005080 1.2e-19 99.8 117 51.3
FAN20G0205 Fragaria x ananassa HOM05D003747 ORTHO05D005080 1.2e-19 99.8 117 50.4
Manes.18G017800 Manihot esculenta HOM05D003747 ORTHO05D005080 1.2e-19 99.8 116 52.6
Potri.005G234900 Populus trichocarpa HOM05D003747 ORTHO05D005080 1.2e-19 99.8 116 54.3
Gohir.D01G100800 Gossypium hirsutum HOM05D003747 ORTHO05D005080 1.6e-19 99.4 116 53.4
Gorai.002G125100 Gossypium raimondii HOM05D003747 ORTHO05D005080 1.6e-19 99.4 116 53.4
Sp4g14820 Schrenkiella parvula HOM05D003747 ORTHO05D005080 1.6e-19 99.4 116 52.6
Duzib041G0542 Durio zibethinus HOM05D003747 ORTHO05D005080 2.1e-19 99.0 116 52.6
TAR376G0166 Trochodendron aralioides HOM05D003747 ORTHO05D005080 2.7e-19 98.6 115 53.0
Ciclev10000324m.g Citrus clementina HOM05D003747 ORTHO05D005080 4.6e-19 97.8 116 49.1
Duzib116G0012 Durio zibethinus HOM05D003747 ORTHO05D005080 4.6e-19 97.8 116 50.9
Gohir.A01G113100 Gossypium hirsutum HOM05D003747 ORTHO05D005080 6.0e-19 97.4 116 52.6
Prupe.1G370600 Prunus persica HOM05D003747 ORTHO05D005080 6.0e-19 97.4 114 51.8
CANSAT25G1149 Cannabis sativa HOM05D003747 ORTHO05D005080 7.9e-19 97.1 116 49.1
CiPaw.07G154200 Carya illinoinensis HOM05D003747 ORTHO05D005080 7.9e-19 97.1 116 51.7
Gohir.A05G188400 Gossypium hirsutum HOM05D003747 ORTHO05D005080 7.9e-19 97.1 116 50.0
Gohir.D05G191500 Gossypium hirsutum HOM05D003747 ORTHO05D005080 7.9e-19 97.1 116 50.0
Gorai.009G196800 Gossypium raimondii HOM05D003747 ORTHO05D005080 7.9e-19 97.1 116 50.0
Peaxi162Scf00640g00034 Petunia axillaris HOM05D003747 ORTHO05D005080 7.9e-19 97.1 116 50.9
CiPaw.08G062900 Carya illinoinensis HOM05D003747 ORTHO05D005080 1.0e-18 96.7 116 50.0
MD15G1017300 Malus domestica HOM05D003747 ORTHO05D005080 1.0e-18 96.7 117 51.3
Manes.05G152300 Manihot esculenta HOM05D003747 ORTHO05D005080 1.0e-18 96.7 116 50.9
QL02p010745 Quercus lobata HOM05D003747 ORTHO05D005080 1.0e-18 96.7 115 51.3
Atru.chr13.357 Acer truncatum HOM05D003747 ORTHO05D005080 2.3e-18 95.5 114 50.0
Sabra02G0022000 Salix brachista HOM05D003747 ORTHO05D005080 2.3e-18 95.5 116 50.9
PGSC0003DMG400003764 Solanum tuberosum HOM05D003747 ORTHO05D005080 2.3e-18 95.5 116 50.0
MD08G1018000 Malus domestica HOM05D003747 ORTHO05D005080 3.0e-18 95.1 117 51.3
ClCG05G018570 Citrullus lanatus HOM05D003747 ORTHO05D005080 3.9e-18 94.7 116 49.1
MELO3C024651.2 Cucumis melo HOM05D003747 ORTHO05D005080 3.9e-18 94.7 116 49.1
Nitab4.5_0012730g0020 Nicotiana tabacum HOM05D003747 ORTHO05D005080 3.9e-18 94.7 116 50.0
CAN.G851.8 Capsicum annuum HOM05D003747 ORTHO05D005080 5.1e-18 94.4 116 48.3
Solyc04g081050.2 Solanum lycopersicum HOM05D003747 ORTHO05D005080 5.1e-18 94.4 116 49.1
Sopen04g034670 Solanum pennellii HOM05D003747 ORTHO05D005080 5.1e-18 94.4 116 49.1
CsaV3_1G045450 Cucumis sativus L. HOM05D003747 ORTHO05D005080 8.7e-18 93.6 116 48.3
CsaV3_UNG233290 Cucumis sativus L. HOM05D003747 ORTHO05D005080 8.7e-18 93.6 116 48.3
TPR.G16935 Trifolium pratense HOM05D003747 ORTHO05D005080 8.7e-18 93.6 106 49.1
arahy.Tifrunner.gnm1.ann1.K8KKRC Arachis hypogaea HOM05D003747 ORTHO05D005080 1.1e-17 93.2 116 48.3
arahy.Tifrunner.gnm1.ann1.VC055M Arachis hypogaea HOM05D003747 ORTHO05D005080 1.1e-17 93.2 116 48.3
Lalb_Chr19g0128511 Lupinus albus HOM05D003747 ORTHO05D005080 1.1e-17 93.2 116 48.3
Peaxi162Scf00287g00127 Petunia axillaris HOM05D003747 ORTHO05D005080 1.1e-17 93.2 116 48.3
TWI56G0727 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 1.5e-17 92.8 116 49.1
Cc10_g02100 Coffea canephora HOM05D003747 ORTHO05D005080 1.9e-17 92.4 115 48.7
Nn6g32245 Nelumbo nucifera HOM05D003747 ORTHO05D005080 1.9e-17 92.4 113 51.3
Nitab4.5_0000352g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 1.9e-17 92.4 116 50.0
Cpa.g.sc140.21 Carica papaya HOM05D003747 ORTHO05D005080 3.3e-17 91.7 116 48.3
Potri.002G027900 Populus trichocarpa HOM05D003747 ORTHO05D005080 3.3e-17 91.7 116 48.3
Nitab4.5_0004368g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 4.3e-17 91.3 116 49.1
Sc02g0005230 Simmondsia chinensis HOM05D003747 ORTHO05D005080 4.3e-17 91.3 115 51.3
TAR628G0607 Trochodendron aralioides HOM05D003747 ORTHO05D005080 4.3e-17 91.3 91 58.2
Oeu046243.1 Olea europaea HOM05D003747 ORTHO05D005080 7.4e-17 90.5 116 45.7
Eucgr.F01620 Eucalyptus grandis HOM05D003747 ORTHO05D005080 9.7e-17 90.1 117 50.4
Oeu046245.1 Olea europaea HOM05D003747 ORTHO05D005080 9.7e-17 90.1 116 45.7
EL10Ac1g00554 Beta vulgaris HOM05D003747 ORTHO05D005080 1.3e-16 89.7 115 49.6
TWI12G0622 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 1.3e-16 89.7 116 46.6
VMungo0720G2667 Vigna mungo HOM05D003747 ORTHO05D005080 1.3e-16 89.7 116 46.6
Zm00001eb011630 Zea mays HOM05D003747 ORTHO05D005080 1.3e-16 89.7 114 50.9
Aqoxy6G02380 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 2.2e-16 89.0 117 47.9
Sed0022188 Sechium edule HOM05D003747 ORTHO05D005080 2.2e-16 89.0 116 46.6
Oeu047748.1 Olea europaea HOM05D003747 ORTHO05D005080 4.8e-16 87.8 116 46.6
Lj6g0007889 Lotus japonicus HOM05D003747 ORTHO05D005080 6.3e-16 87.4 116 45.7
Nn5g29219 Nelumbo nucifera HOM05D003747 ORTHO05D005080 6.3e-16 87.4 91 57.1
Phvul.007G231400 Phaseolus vulgaris HOM05D003747 ORTHO05D005080 6.3e-16 87.4 116 45.7
Rhsim06G0026300 Rhododendron simsii HOM05D003747 ORTHO05D005080 6.3e-16 87.4 116 46.6
MSTRG.24265 Avicennia marina HOM05D003747 ORTHO05D005080 8.2e-16 87.0 116 46.6
Migut.N03134 Erythranthe guttata HOM05D003747 ORTHO05D005080 8.2e-16 87.0 116 45.7
Lalb_Chr03g0036971 Lupinus albus HOM05D003747 ORTHO05D005080 8.2e-16 87.0 116 45.7
PSO541G0570 Papaver somniferum HOM05D003747 ORTHO05D005080 8.2e-16 87.0 115 47.0
MSTRG.25220 Avicennia marina HOM05D003747 ORTHO05D005080 1.1e-15 86.7 116 45.7
Lj4C29T2 Lonicera japonica HOM05D003747 ORTHO05D005080 1.1e-15 86.7 116 50.0
AUR62014428 Chenopodium quinoa HOM05D003747 ORTHO05D005080 1.4e-15 86.3 115 47.8
Medtr1g045490 Medicago truncatula HOM05D003747 ORTHO05D005080 1.4e-15 86.3 98 48.0
Zm00001eb398060 Zea mays HOM05D003747 ORTHO05D005080 1.4e-15 86.3 114 49.1
SGA_v2.0_scaffold326G48749 Striga asiatica HOM05D003747 ORTHO05D005080 1.8e-15 85.9 116 47.4
AUR62034569 Chenopodium quinoa HOM05D003747 ORTHO05D005080 2.4e-15 85.5 105 50.5
PGR083G0723 Punica granatum HOM05D003747 ORTHO05D005080 2.4e-15 85.5 118 48.3
Ah.05g171920 Amaranthus hybridus HOM05D003747 ORTHO05D005080 3.1e-15 85.1 115 47.0
Os03g0263900 Oryza sativa ssp. japonica HOM05D003747 ORTHO05D005080 3.1e-15 85.1 114 48.2
Psat0s1558g0040 Pisum sativum HOM05D003747 ORTHO05D005080 3.1e-15 85.1 116 43.1
PSO675G4036 Papaver somniferum HOM05D003747 ORTHO05D005080 5.3e-15 84.3 122 44.3
SEGI_05010 Sequoiadendron giganteum HOM05D003747 ORTHO05D005080 5.3e-15 84.3 113 42.5
MBI05_g04846_MAGBIO Magnolia biondii HOM05D003747 ORTHO05D005080 6.9e-15 84.0 115 47.8
Glyma.10G132800 Glycine max HOM05D003747 ORTHO05D005080 9.0e-15 83.6 116 44.0
unitig_899.g15539 Utricularia gibba HOM05D003747 ORTHO05D005080 9.0e-15 83.6 98 48.0
Actinidia15389 Actinidia chinensis HOM05D003747 ORTHO05D005080 1.2e-14 83.2 112 49.1
Glyma.20G084100 Glycine max HOM05D003747 ORTHO05D005080 3.4e-14 81.6 116 42.2
Hma1.2p1_1386F.1_g279810 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 5.9e-14 80.9 115 46.1
CSS0038687 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 7.7e-14 80.5 104 47.1
Ca_11895_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 7.7e-14 80.5 98 46.9
Ca_30287_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 7.7e-14 80.5 98 46.9
DCAR_022445 Daucus carota HOM05D003747 ORTHO05D005080 1.0e-13 80.1 116 43.1
Lsat_1_v5_gn_5_26081 Lactuca sativa HOM05D003747 ORTHO05D005080 1.7e-13 79.3 119 42.9
ATR0620G056 Amborella trichopoda HOM05D003747 ORTHO05D005080 2.2e-13 79.0 115 44.3
CSS0007586 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 2.2e-13 79.0 116 44.0
CSS0029452 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 2.2e-13 79.0 116 44.0
SHI08097 Sapria himalayana HOM05D003747 ORTHO05D005080 2.2e-13 79.0 97 47.4
Aqoxy5G01483 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 3.8e-13 78.2 111 45.0
Dinv39487 Davidia involucrata HOM05D003747 ORTHO05D005080 6.5e-13 77.4 116 44.0
ECA246G3046 Erigeron canadensis HOM05D003747 ORTHO05D005080 6.5e-13 77.4 118 43.2
HanXRQChr09g0269391 Helianthus annuus HOM05D003747 ORTHO05D005080 6.5e-13 77.4 118 43.2
Mapoly0016s0016 Marchantia polymorpha HOM05D003747 ORTHO05D005080 6.5e-13 77.4 121 38.0
RcHm_v2.0_Chr6g0302151 Rosa chinensis HOM05D003747 ORTHO05D005080 6.5e-13 77.4 45 82.2
TAR376G0643 Trochodendron aralioides HOM05D003747 ORTHO05D005080 6.5e-13 77.4 115 41.7
ECA232G3638 Erigeron canadensis HOM05D003747 ORTHO05D005080 1.4e-12 76.3 118 41.5
HanXRQChr05g0156281 Helianthus annuus HOM05D003747 ORTHO05D005080 2.5e-12 75.5 91 52.7
Hma1.2p1_0773F.1_g216160 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 5.5e-12 74.3 115 43.5
Rhsim06G0014300 Rhododendron simsii HOM05D003747 ORTHO05D000001 7.2e-12 73.9 97 46.4
Cc10_g07350 Coffea canephora HOM05D003747 ORTHO05D005080 1.6e-11 72.8 98 44.9
MBI16_g07670_MAGBIO Magnolia biondii HOM05D003747 ORTHO05D005080 1.6e-11 72.8 115 40.0
Dinv31811 Davidia involucrata HOM05D003747 ORTHO05D005080 2.1e-11 72.4 91 49.5
SMO118G0420 Selaginella moellendorffii HOM05D003747 ORTHO05D005080 2.1e-11 72.4 117 38.5
Lsat_1_v5_gn_4_116240 Lactuca sativa HOM05D003747 ORTHO05D005080 2.7e-11 72.0 119 39.5
unitig_746.g26813 Utricularia gibba HOM05D003747 ORTHO05D005080 1.8e-10 69.3 45 73.3
TAR628G1670 Trochodendron aralioides HOM05D003747 ORTHO05D016772 3.0e-10 68.6 43 79.1
HPP92_027212 Vanilla planifolia HOM05D003747 ORTHO05D051588 2.5e-09 65.5 44 68.2
CDE05G0031 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 4.3e-09 64.7 44 72.7
Pp3c1_8310 Physcomitrium patens HOM05D003747 ORTHO05D005080 9.7e-09 63.5 116 37.9
Pp3c2_26690 Physcomitrium patens HOM05D003747 ORTHO05D005080 1.3e-08 63.2 116 37.9
SMO331G0035 Selaginella moellendorffii HOM05D003747 ORTHO05D005080 2.8e-08 62.0 102 35.3
CBR_g21825 Chara braunii HOM05D003747 ORTHO05D005080 1.8e-07 59.3 96 36.5
CDE02G1942 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 3.1e-07 58.5 62 53.2
AagrBONN_evm.TU.Sc2ySwM_228.5529 Anthoceros agrestis HOM05D003747 ORTHO05D005080 1.2e-06 56.6 118 33.1


User provided reference genes

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