Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 1.8e-87 325.9 161 100.0
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 5.6e-73 277.7 168 85.1
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 7.1e-60 234.2 152 80.3
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 6.9e-39 164.5 96 82.3
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 6.9e-39 164.5 96 82.3
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 6.9e-39 164.5 96 82.3
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 6.9e-39 164.5 96 82.3
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 6.9e-39 164.5 96 82.3
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 6.9e-39 164.5 96 82.3
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 6.9e-39 164.5 96 82.3
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 2.0e-38 162.9 96 81.2
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 3.4e-38 162.2 96 80.2
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 4.5e-38 161.8 96 80.2
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 4.5e-38 161.8 96 80.2
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 5.8e-38 161.4 96 80.2
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 5.8e-38 161.4 96 80.2
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 1.7e-37 159.8 96 79.2
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 2.2e-37 159.5 96 78.1
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 2.9e-37 159.1 96 78.1
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 2.9e-37 159.1 96 80.2
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 2.9e-37 159.1 96 78.1
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 1.1e-36 157.1 96 77.1
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.1e-36 157.1 96 77.1
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 1.4e-36 156.8 96 78.1
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 1.9e-36 156.4 96 77.1
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 1.9e-36 156.4 96 77.1
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 1.9e-36 156.4 96 77.1
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 2.5e-36 156.0 96 76.0
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 3.2e-36 155.6 96 77.1
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 3.2e-36 155.6 96 76.0
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 3.2e-36 155.6 96 76.0
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 3.2e-36 155.6 96 77.1
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 4.2e-36 155.2 96 76.0
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 4.2e-36 155.2 96 78.1
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 5.5e-36 154.8 96 76.0
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 5.5e-36 154.8 96 77.1
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 5.5e-36 154.8 96 77.1
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 5.5e-36 154.8 96 77.1
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 5.5e-36 154.8 96 77.1
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 7.1e-36 154.5 96 78.1
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 7.1e-36 154.5 96 76.0
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 7.1e-36 154.5 96 76.0
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 7.1e-36 154.5 96 77.1
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 7.1e-36 154.5 96 76.0
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 7.1e-36 154.5 96 76.0
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 9.3e-36 154.1 96 76.0
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 9.3e-36 154.1 96 76.0
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 9.3e-36 154.1 96 75.0
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 9.3e-36 154.1 96 76.0
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 9.3e-36 154.1 95 76.8
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 9.3e-36 154.1 96 76.0
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 1.2e-35 153.7 96 77.1
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 1.2e-35 153.7 96 77.1
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 1.2e-35 153.7 96 75.0
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.2e-35 153.7 96 75.0
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.2e-35 153.7 96 76.0
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 1.2e-35 153.7 96 74.0
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 1.2e-35 153.7 95 76.8
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 1.6e-35 153.3 95 75.8
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 1.6e-35 153.3 96 76.0
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 1.6e-35 153.3 96 76.0
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 2.1e-35 152.9 96 78.1
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 2.1e-35 152.9 96 74.0
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 2.7e-35 152.5 95 75.8
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 2.7e-35 152.5 96 75.0
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 2.7e-35 152.5 96 75.0
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 2.7e-35 152.5 96 75.0
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 2.7e-35 152.5 96 76.0
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 2.7e-35 152.5 96 76.0
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 3.5e-35 152.1 96 75.0
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 4.6e-35 151.8 96 76.0
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 4.6e-35 151.8 96 76.0
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 4.6e-35 151.8 96 76.0
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 4.6e-35 151.8 96 72.9
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 6.0e-35 151.4 94 75.5
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 6.0e-35 151.4 96 76.0
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 6.0e-35 151.4 96 74.0
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 6.0e-35 151.4 96 74.0
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 7.9e-35 151.0 96 75.0
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 7.9e-35 151.0 96 75.0
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 1.0e-34 150.6 95 76.8
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 1.0e-34 150.6 96 75.0
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 1.0e-34 150.6 96 74.0
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 1.0e-34 150.6 96 71.9
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 1.3e-34 150.2 96 74.0
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 1.3e-34 150.2 96 74.0
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 1.3e-34 150.2 96 75.0
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.8e-34 149.8 96 74.0
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 1.8e-34 149.8 96 74.0
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 1.8e-34 149.8 96 74.0
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.3e-34 149.4 96 71.9
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 2.3e-34 149.4 96 76.0
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.3e-34 149.4 96 76.0
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.3e-34 149.4 96 76.0
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.3e-34 149.4 96 76.0
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 2.3e-34 149.4 95 73.7
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 2.3e-34 149.4 96 72.9
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 2.3e-34 149.4 96 76.0
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 2.3e-34 149.4 96 74.0
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 2.3e-34 149.4 96 76.0
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 2.3e-34 149.4 96 74.0
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 3.0e-34 149.1 93 76.3
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 3.0e-34 149.1 96 72.9
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 3.0e-34 149.1 96 74.0
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 3.0e-34 149.1 96 72.9
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 3.0e-34 149.1 96 74.0
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 3.9e-34 148.7 96 75.0
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 3.9e-34 148.7 96 72.9
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 3.9e-34 148.7 96 72.9
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 3.9e-34 148.7 95 72.6
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 3.9e-34 148.7 96 71.9
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 5.1e-34 148.3 96 70.8
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 5.1e-34 148.3 96 71.9
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 5.1e-34 148.3 96 76.0
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 6.7e-34 147.9 95 75.8
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 6.7e-34 147.9 96 75.0
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 6.7e-34 147.9 96 76.0
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 8.7e-34 147.5 96 68.8
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 8.7e-34 147.5 95 73.7
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 8.7e-34 147.5 96 71.9
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 1.5e-33 146.7 93 75.3
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 1.9e-33 146.4 96 74.0
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 1.9e-33 146.4 96 71.9
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 2.5e-33 146.0 96 69.8
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 2.5e-33 146.0 95 74.7
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 2.5e-33 146.0 95 74.7
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 2.5e-33 146.0 96 71.9
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 4.3e-33 145.2 96 71.9
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 4.3e-33 145.2 96 71.9
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 4.3e-33 145.2 96 71.9
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 5.7e-33 144.8 96 72.9
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 1.3e-32 143.7 96 71.9
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 1.6e-32 143.3 95 71.6
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 2.2e-32 142.9 96 71.9
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 1.8e-31 139.8 96 67.7
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 5.3e-31 138.3 96 67.7
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 3.4e-30 135.6 118 56.8
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 7.6e-30 134.4 108 63.9
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 7.6e-30 134.4 118 56.8
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 4.2e-28 128.6 90 72.2
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 7.9e-27 124.4 87 65.5
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 1.3e-26 123.6 96 57.3
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 3.9e-26 122.1 96 57.3
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 6.7e-26 121.3 74 77.0
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 8.8e-26 120.9 83 72.3
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 8.8e-26 120.9 97 57.7
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 3.3e-25 119.0 86 70.9
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 4.8e-24 115.2 96 61.5
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 1.4e-23 113.6 69 79.7
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 1.3e-21 107.1 66 78.8
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 1.1e-20 104.0 96 57.3
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 2.1e-19 99.8 67 71.6
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 4.4e-17 92.0 95 53.7
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 4.8e-16 88.6 53 84.9
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 4.8e-16 88.6 53 84.9
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 1.4e-15 87.0 53 84.9
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 1.4e-15 87.0 53 84.9
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 3.4e-14 82.4 48 75.0
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 3.4e-14 82.4 48 75.0
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 3.9e-10 68.9 53 69.8
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 3.9e-10 68.9 53 69.8
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 8.8e-10 67.8 53 69.8
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 2.8e-08 62.8 42 66.7
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 2.8e-08 62.8 56 58.9
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 3.7e-08 62.4 47 68.1
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 3.7e-08 62.4 47 68.1
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 3.7e-08 62.4 47 68.1
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 3.7e-08 62.4 47 68.1
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 3.7e-08 62.4 47 68.1
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 3.7e-08 62.4 47 68.1
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 3.7e-08 62.4 47 68.1
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 4.8e-08 62.0 47 68.1
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 6.3e-08 61.6 47 68.1
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 6.3e-08 61.6 47 68.1
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 1.4e-07 60.5 47 66.0
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 4.1e-07 58.9 40 72.5
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 7.0e-07 58.2 32 81.2
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 2.6e-06 56.2 47 63.8


User provided reference genes

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