Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36577 Brassica carinata HOM05D003802 ORTHO05D004829 2.5e-74 282.0 137 100.0
BcaC05g27741 Brassica carinata HOM05D003802 ORTHO05D004829 4.5e-71 271.2 137 96.4
BcaC05g29883 Brassica carinata HOM05D003802 ORTHO05D004829 2.5e-66 255.4 128 95.3
BolC5t35018H Brassica oleracea HOM05D003802 ORTHO05D004829 1.2e-63 246.5 127 92.9
C05p37270 Brassica napus HOM05D003802 ORTHO05D004829 2.6e-63 245.4 122 96.7
BolC5t35016H Brassica oleracea HOM05D003802 ORTHO05D004829 1.0e-59 233.4 127 91.3
BcaB01g00473 Brassica carinata HOM05D003802 ORTHO05D004829 1.1e-58 229.9 122 92.6
A09p44980 Brassica napus HOM05D003802 ORTHO05D004829 1.1e-58 229.9 122 92.6
C08p27060 Brassica napus HOM05D003802 ORTHO05D004829 1.1e-58 229.9 122 92.6
BolC8t50321H Brassica oleracea HOM05D003802 ORTHO05D004829 1.1e-58 229.9 122 92.6
BraA09t39958Z Brassica rapa HOM05D003802 ORTHO05D004829 1.1e-58 229.9 122 92.6
BcaB01g00413 Brassica carinata HOM05D003802 ORTHO05D004829 3.3e-58 228.4 122 91.8
BcaC02g09302 Brassica carinata HOM05D003802 ORTHO05D004829 1.4e-56 223.0 122 88.5
C04p41140 Brassica napus HOM05D003802 ORTHO05D004829 1.4e-56 223.0 122 88.5
BolC4t25697H Brassica oleracea HOM05D003802 ORTHO05D004829 1.4e-56 223.0 122 88.5
BcaB02g08601 Brassica carinata HOM05D003802 ORTHO05D004829 3.1e-56 221.9 122 87.7
A04p07490 Brassica napus HOM05D003802 ORTHO05D004829 6.9e-56 220.7 122 88.5
BraA04t16444Z Brassica rapa HOM05D003802 ORTHO05D004829 6.9e-56 220.7 122 88.5
Sp5g10430 Schrenkiella parvula HOM05D003802 ORTHO05D004829 2.5e-53 212.2 122 84.4
Thhalv10010388m.g Eutrema salsugineum HOM05D003802 ORTHO05D004829 1.2e-52 209.9 122 82.8
AT3G51840 Arabidopsis thaliana HOM05D003802 ORTHO05D004829 6.0e-52 207.6 122 82.0
AL5G32300 Arabidopsis lyrata HOM05D003802 ORTHO05D004829 7.9e-52 207.2 122 81.1
Carub.0005s1819 Capsella rubella HOM05D003802 ORTHO05D004829 2.3e-51 205.7 122 83.6
THA.LOC104805957 Tarenaya hassleriana HOM05D003802 ORTHO05D004829 2.5e-50 202.2 122 80.3
CARHR161470 Cardamine hirsuta HOM05D003802 ORTHO05D004829 7.4e-50 200.7 122 79.5
Aa31LG5G23700 Aethionema arabicum HOM05D003802 ORTHO05D004829 1.8e-48 196.1 122 77.0
CSS0032028 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 1.5e-47 193.0 122 71.3
CSS0036674 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 1.5e-47 193.0 122 71.3
Peaxi162Scf00009g00163 Petunia axillaris HOM05D003802 ORTHO05D004829 2.0e-47 192.6 123 73.2
Eucgr.A00529 Eucalyptus grandis HOM05D003802 ORTHO05D004829 2.6e-47 192.2 122 74.6
FAN05G2463 Fragaria x ananassa HOM05D003802 ORTHO05D004829 2.6e-47 192.2 122 75.4
FvH4_6g11280 Fragaria vesca HOM05D003802 ORTHO05D004829 3.4e-47 191.8 122 75.4
FAN14G2331 Fragaria x ananassa HOM05D003802 ORTHO05D004829 3.4e-47 191.8 122 75.4
FAN14G4713 Fragaria x ananassa HOM05D003802 ORTHO05D004829 3.4e-47 191.8 122 75.4
Prupe.6G279200 Prunus persica HOM05D003802 ORTHO05D004829 4.5e-47 191.4 122 75.4
TAR369G0012 Trochodendron aralioides HOM05D003802 ORTHO05D004829 5.9e-47 191.0 123 74.0
Glyma.07G151500 Glycine max HOM05D003802 ORTHO05D004829 1.0e-46 190.3 122 72.1
Manes.08G093200 Manihot esculenta HOM05D003802 ORTHO05D004829 1.0e-46 190.3 122 73.0
CAN.G823.1 Capsicum annuum HOM05D003802 ORTHO05D004829 1.7e-46 189.5 123 72.4
Cfa017192 Carpinus fangiana HOM05D003802 ORTHO05D004829 2.2e-46 189.1 122 73.0
Haze_21019 Corylus avellana HOM05D003802 ORTHO05D004829 2.2e-46 189.1 122 73.0
Lj3C951G1 Lonicera japonica HOM05D003802 ORTHO05D004829 2.2e-46 189.1 123 74.0
Cpa.g.sc11.100 Carica papaya HOM05D003802 ORTHO05D004829 3.8e-46 188.3 122 72.1
Dinv01494 Davidia involucrata HOM05D003802 ORTHO05D004829 3.8e-46 188.3 122 72.1
Lj3g0007770 Lotus japonicus HOM05D003802 ORTHO05D004829 3.8e-46 188.3 122 72.1
TWI74G0069 Tripterygium wilfordii HOM05D003802 ORTHO05D004829 3.8e-46 188.3 122 73.0
Migut.J00147 Erythranthe guttata HOM05D003802 ORTHO05D004829 5.0e-46 188.0 123 74.8
Lalb_Chr12g0207031 Lupinus albus HOM05D003802 ORTHO05D004829 5.0e-46 188.0 122 75.4
PGR031G1102 Punica granatum HOM05D003802 ORTHO05D004829 5.0e-46 188.0 122 72.1
Ciclev10011934m.g Citrus clementina HOM05D003802 ORTHO05D004829 6.5e-46 187.6 122 73.8
DCAR_015400 Daucus carota HOM05D003802 ORTHO05D004829 8.5e-46 187.2 123 73.2
Rhsim04G0127300 Rhododendron simsii HOM05D003802 ORTHO05D004829 8.5e-46 187.2 122 72.1
SalBow5G1244 Salvia bowleyana HOM05D003802 ORTHO05D004829 8.5e-46 187.2 123 75.6
CSS0028267 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 1.1e-45 186.8 122 71.3
PGSC0003DMG400011023 Solanum tuberosum HOM05D003802 ORTHO05D004829 1.4e-45 186.4 123 70.7
Glyma.18G202800 Glycine max HOM05D003802 ORTHO05D004829 1.9e-45 186.0 122 71.3
RcHm_v2.0_Chr3g0462821 Rosa chinensis HOM05D003802 ORTHO05D004829 1.9e-45 186.0 122 73.8
Solyc10g076600.2 Solanum lycopersicum HOM05D003802 ORTHO05D004829 1.9e-45 186.0 131 67.9
Sopen10g028240 Solanum pennellii HOM05D003802 ORTHO05D004829 2.5e-45 185.7 131 67.9
PGSC0003DMG401019176 Solanum tuberosum HOM05D003802 ORTHO05D004829 2.5e-45 185.7 131 67.2
SalBow5G2900 Salvia bowleyana HOM05D003802 ORTHO05D004829 3.2e-45 185.3 123 75.6
SalBow5G3730 Salvia bowleyana HOM05D003802 ORTHO05D004829 3.2e-45 185.3 123 75.6
TWI53G0442 Tripterygium wilfordii HOM05D003802 ORTHO05D004829 3.2e-45 185.3 122 69.7
GSVIVG01011175001 Vitis vinifera HOM05D003802 ORTHO05D004829 3.2e-45 185.3 122 70.5
Nn2g13152 Nelumbo nucifera HOM05D003802 ORTHO05D004829 4.2e-45 184.9 123 69.1
Gohir.D09G161600 Gossypium hirsutum HOM05D003802 ORTHO05D004829 5.5e-45 184.5 122 72.1
Gorai.006G183300 Gossypium raimondii HOM05D003802 ORTHO05D004829 5.5e-45 184.5 122 72.1
HanXRQChr11g0331731 Helianthus annuus HOM05D003802 ORTHO05D004829 5.5e-45 184.5 122 72.1
Solyc10g085200.2 Solanum lycopersicum HOM05D003802 ORTHO05D004829 5.5e-45 184.5 123 70.7
COL.COLO4_14514 Corchorus olitorius HOM05D003802 ORTHO05D004829 7.2e-45 184.1 122 72.1
MD04G1155700 Malus domestica HOM05D003802 ORTHO05D004829 7.2e-45 184.1 122 73.0
Nitab4.5_0000119g0070 Nicotiana tabacum HOM05D003802 ORTHO05D004829 7.2e-45 184.1 122 71.3
MSTRG.5566 Avicennia marina HOM05D003802 ORTHO05D004829 9.4e-45 183.7 122 70.5
Medtr7g068850 Medicago truncatula HOM05D003802 ORTHO05D004829 9.4e-45 183.7 122 69.7
Sabra16G0114200 Salix brachista HOM05D003802 ORTHO05D004829 1.2e-44 183.3 122 71.3
Sopen10g034670 Solanum pennellii HOM05D003802 ORTHO05D004829 1.2e-44 183.3 123 70.7
SGA_v2.0_scaffold95G28857 Striga asiatica HOM05D003802 ORTHO05D004829 1.6e-44 183.0 122 72.1
Hma1.2p1_0362F.1_g136390 Hydrangea macrophylla HOM05D003802 ORTHO05D004829 2.1e-44 182.6 122 71.3
Potri.016G118000 Populus trichocarpa HOM05D003802 ORTHO05D004829 2.1e-44 182.6 122 69.7
QL07p035231 Quercus lobata HOM05D003802 ORTHO05D004829 2.7e-44 182.2 122 69.7
EL10Ac5g12547 Beta vulgaris HOM05D003802 ORTHO05D004829 4.6e-44 181.4 122 71.3
CiPaw.10G157200 Carya illinoinensis HOM05D003802 ORTHO05D004829 4.6e-44 181.4 122 68.9
Sc07g0006670 Simmondsia chinensis HOM05D003802 ORTHO05D004829 4.6e-44 181.4 117 72.6
Thecc.05G013900 Theobroma cacao HOM05D003802 ORTHO05D004829 4.6e-44 181.4 122 70.5
Aa31LG10G9050 Aethionema arabicum HOM05D003802 ORTHO05D004829 6.1e-44 181.0 150 65.3
CAN.G243.8 Capsicum annuum HOM05D003802 ORTHO05D004829 6.1e-44 181.0 123 69.9
BraA09t40009Z Brassica rapa HOM05D003802 ORTHO05D004829 7.9e-44 180.6 126 78.6
Potri.006G101800 Populus trichocarpa HOM05D003802 ORTHO05D004829 1.4e-43 179.9 122 72.1
MELO3C009153.2 Cucumis melo HOM05D003802 ORTHO05D004829 1.8e-43 179.5 122 68.0
MBI03_g24259_MAGBIO Magnolia biondii HOM05D003802 ORTHO05D004829 2.3e-43 179.1 122 71.3
Nitab4.5_0004107g0050 Nicotiana tabacum HOM05D003802 ORTHO05D004829 2.3e-43 179.1 123 69.1
Peaxi162Scf00014g00222 Petunia axillaris HOM05D003802 ORTHO05D004829 2.3e-43 179.1 123 69.9
Sed0011339 Sechium edule HOM05D003802 ORTHO05D004829 2.3e-43 179.1 122 70.5
Cc06_g01200 Coffea canephora HOM05D003802 ORTHO05D004829 3.0e-43 178.7 123 68.3
CsaV3_3G033630 Cucumis sativus L. HOM05D003802 ORTHO05D004829 3.0e-43 178.7 122 68.9
Dinv09291 Davidia involucrata HOM05D003802 ORTHO05D004829 3.0e-43 178.7 122 70.5
Gohir.A09G166000 Gossypium hirsutum HOM05D003802 ORTHO05D004829 3.0e-43 178.7 122 69.7
CDE06G0316 Ceratophyllum demersum HOM05D003802 ORTHO05D004829 3.9e-43 178.3 122 68.0
Psat3g127160 Pisum sativum HOM05D003802 ORTHO05D004829 5.1e-43 177.9 122 68.9
Hund10994 Selenicereus undatus HOM05D003802 ORTHO05D004829 6.7e-43 177.6 125 68.0
AUR62030803 Chenopodium quinoa HOM05D003802 ORTHO05D004829 8.8e-43 177.2 122 70.5
TPR.G8416 Trifolium pratense HOM05D003802 ORTHO05D004829 8.8e-43 177.2 122 68.0
Zm00001eb282120 Zea mays HOM05D003802 ORTHO05D004829 8.8e-43 177.2 122 68.9
arahy.Tifrunner.gnm1.ann1.0003EL Arachis hypogaea HOM05D003802 ORTHO05D004829 1.5e-42 176.4 122 68.9
arahy.Tifrunner.gnm1.ann1.DW8YXR Arachis hypogaea HOM05D003802 ORTHO05D004829 1.5e-42 176.4 122 68.9
ECA236G0063 Erigeron canadensis HOM05D003802 ORTHO05D004829 1.5e-42 176.4 122 69.7
HPP92_006763 Vanilla planifolia HOM05D003802 ORTHO05D004829 2.0e-42 176.0 123 67.5
BcaC04g20180 Brassica carinata HOM05D003802 ORTHO05D004829 2.5e-42 175.6 136 71.3
Oeu038764.2 Olea europaea HOM05D003802 ORTHO05D004829 2.5e-42 175.6 142 65.5
Nitab4.5_0000770g0030 Nicotiana tabacum HOM05D003802 ORTHO05D004829 3.3e-42 175.3 148 58.8
PSO339G3660 Papaver somniferum HOM05D003802 ORTHO05D004829 5.7e-42 174.5 123 69.1
PSO384G3434 Papaver somniferum HOM05D003802 ORTHO05D004829 5.7e-42 174.5 123 69.1
Os01g0159400 Oryza sativa ssp. japonica HOM05D003802 ORTHO05D004829 7.4e-42 174.1 122 68.0
Atru.chr8.2601 Acer truncatum HOM05D003802 ORTHO05D004829 1.3e-41 173.3 122 65.6
Phvul.010G076000 Phaseolus vulgaris HOM05D003802 ORTHO05D004829 1.3e-41 173.3 122 67.2
Lalb_Chr03g0043201 Lupinus albus HOM05D003802 ORTHO05D004829 2.2e-41 172.6 122 63.9
Aqoxy4G02528 Aquilegia oxysepala HOM05D003802 ORTHO05D004829 2.8e-41 172.2 122 68.9
ClCG10G022250 Citrullus lanatus HOM05D003802 ORTHO05D004829 2.8e-41 172.2 132 64.4
Os05g0163700 Oryza sativa ssp. japonica HOM05D003802 ORTHO05D004829 3.7e-41 171.8 122 65.6
ATR0681G264 Amborella trichopoda HOM05D003802 ORTHO05D004829 6.3e-41 171.0 122 65.6
BcaC04g20315 Brassica carinata HOM05D003802 ORTHO05D004829 1.8e-40 169.5 113 81.4
Lj1g0026208 Lotus japonicus HOM05D003802 ORTHO05D004829 3.1e-40 168.7 122 64.8
Ciclev10013381m.g Citrus clementina HOM05D003802 ORTHO05D004829 4.1e-40 168.3 125 64.0
Glyma.03G056400 Glycine max HOM05D003802 ORTHO05D004829 5.3e-40 167.9 148 58.1
Zm00001eb123620 Zea mays HOM05D003802 ORTHO05D004829 9.1e-40 167.2 122 64.8
CSS0000012 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 1.2e-39 166.8 122 64.8
CSS0006548 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 1.2e-39 166.8 122 64.8
CSS0018174 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 1.2e-39 166.8 122 64.8
Ciclev10013617m.g Citrus clementina HOM05D003802 ORTHO05D004829 2.6e-39 165.6 123 67.5
AagrBONN_evm.TU.Sc2ySwM_228.349 Anthoceros agrestis HOM05D003802 ORTHO05D004829 5.9e-39 164.5 125 61.6
SMO118G0494 Selaginella moellendorffii HOM05D003802 ORTHO05D004829 5.0e-38 161.4 117 65.8
vmacro08883 Vaccinium macrocarpon HOM05D003802 ORTHO05D004829 6.5e-38 161.0 102 72.5
Gorai.001G247400 Gossypium raimondii HOM05D003802 ORTHO05D004829 1.1e-37 160.2 122 65.6
Pp3c10_910 Physcomitrium patens HOM05D003802 ORTHO05D004829 1.4e-37 159.8 125 61.6
Gohir.D13G095300 Gossypium hirsutum HOM05D003802 ORTHO05D004829 2.5e-37 159.1 122 65.6
Gohir.A13G085701 Gossypium hirsutum HOM05D003802 ORTHO05D004829 7.2e-37 157.5 122 65.6
VMungo0331G1951 Vigna mungo HOM05D003802 ORTHO05D004829 7.2e-37 157.5 102 72.5
Mapoly0037s0018 Marchantia polymorpha HOM05D003802 ORTHO05D004829 1.2e-36 156.8 121 61.2
Duzib093G0744 Durio zibethinus HOM05D003802 ORTHO05D004829 4.7e-36 154.8 102 71.6
MD12G1170600 Malus domestica HOM05D003802 ORTHO05D004829 6.1e-36 154.5 103 73.8
Pp3c3_8340 Physcomitrium patens HOM05D003802 ORTHO05D004829 1.0e-35 153.7 125 56.8
CBR_g4338 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-35 152.5 122 61.5
Lj3C950G12 Lonicera japonica HOM05D003802 ORTHO05D004829 6.7e-35 151.0 103 71.8
A09p45480 Brassica napus HOM05D003802 ORTHO05D020190 1.5e-34 149.8 81 91.4
CiPaw.09G210700 Carya illinoinensis HOM05D003802 ORTHO05D004829 1.8e-32 142.9 113 57.5
Lsat_1_v5_gn_8_101681 Lactuca sativa HOM05D003802 ORTHO05D004829 4.5e-31 138.3 110 62.7
Cre16.g695100 Chlamydomonas reinhardtii HOM05D003802 ORTHO05D004829 5.9e-31 137.9 116 56.0
Actinidia20743 Actinidia chinensis HOM05D003802 ORTHO05D004829 5.0e-30 134.8 78 79.5
C09p45050 Brassica napus HOM05D003802 ORTHO05D020190 5.0e-30 134.8 68 94.1
BcaC05g29879 Brassica carinata HOM05D003802 ORTHO05D004829 8.5e-30 134.0 83 80.7
SEGI_03618 Sequoiadendron giganteum HOM05D003802 ORTHO05D004829 8.5e-30 134.0 102 58.8
MD12G1169900 Malus domestica HOM05D003802 ORTHO05D004829 1.4e-27 126.7 78 79.5
unitig_736.g22759 Utricularia gibba HOM05D003802 ORTHO05D004829 3.0e-27 125.6 78 74.4
Duzib106G0050 Durio zibethinus HOM05D003802 ORTHO05D004829 6.7e-27 124.4 128 56.2
CSS0035995 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 8.2e-25 117.5 122 54.9
A06p28940 Brassica napus HOM05D003802 ORTHO05D020190 5.9e-23 111.3 81 70.4
BraA06t25839Z Brassica rapa HOM05D003802 ORTHO05D020190 5.9e-23 111.3 81 70.4
BraA03t15488Z Brassica rapa HOM05D003802 ORTHO05D020190 5.0e-22 108.2 72 73.6
Ah.12g058740 Amaranthus hybridus HOM05D003802 ORTHO05D004829 8.0e-20 100.9 143 44.1
AagrBONN_evm.TU.Sc2ySwM_228.298 Anthoceros agrestis HOM05D003802 ORTHO05D004829 2.6e-18 95.9 74 58.1
FAN09G1187 Fragaria x ananassa HOM05D003802 ORTHO05D004829 5.7e-18 94.7 113 47.8
MBI18_g32053_MAGBIO Magnolia biondii HOM05D003802 ORTHO05D004829 7.2e-13 77.8 68 58.8
MD00G1080100 Malus domestica HOM05D003802 ORTHO05D004829 2.1e-12 76.3 68 57.4
Nn2g10872 Nelumbo nucifera HOM05D003802 ORTHO05D020190 2.3e-11 72.8 55 61.8
VMungo1383G0297 Vigna mungo HOM05D003802 ORTHO05D004829 8.3e-09 64.3 43 69.8


User provided reference genes

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