Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36505 Brassica carinata HOM05D003753 ORTHO05D005081 4.5e-32 140.6 68 100.0
BcaC04g22845 Brassica carinata HOM05D003753 ORTHO05D005081 4.7e-21 104.0 52 90.4
C09p14710 Brassica napus HOM05D003753 ORTHO05D005081 4.7e-21 104.0 52 90.4
BolC9t54374H Brassica oleracea HOM05D003753 ORTHO05D005081 4.7e-21 104.0 52 90.4
BcaC07g41247 Brassica carinata HOM05D003753 ORTHO05D005081 1.8e-20 102.1 68 76.5
A09p59260 Brassica napus HOM05D003753 ORTHO05D005081 1.8e-20 102.1 68 76.5
C08p42530 Brassica napus HOM05D003753 ORTHO05D005081 1.8e-20 102.1 68 76.5
BolC8t51814H Brassica oleracea HOM05D003753 ORTHO05D005081 1.8e-20 102.1 68 76.5
BraA09t41308Z Brassica rapa HOM05D003753 ORTHO05D005081 1.8e-20 102.1 68 76.5
BcaB08g34872 Brassica carinata HOM05D003753 ORTHO05D005081 5.2e-20 100.5 68 75.0
AT2G19540 Arabidopsis thaliana HOM05D003753 ORTHO05D005081 4.4e-19 97.4 51 86.3
CARHR109970 Cardamine hirsuta HOM05D003753 ORTHO05D005081 4.4e-19 97.4 51 86.3
Carub.0003s3383 Capsella rubella HOM05D003753 ORTHO05D005081 1.7e-18 95.5 51 84.3
Aa31LG8G16560 Aethionema arabicum HOM05D003753 ORTHO05D005081 4.5e-16 87.4 51 74.5
Cpa.g.sc83.92 Carica papaya HOM05D003753 ORTHO05D005081 1.3e-15 85.9 50 72.0
THA.LOC104814615 Tarenaya hassleriana HOM05D003753 ORTHO05D005081 1.3e-15 85.9 51 74.5
Haze_25905 Corylus avellana HOM05D003753 ORTHO05D005081 8.5e-15 83.2 52 73.1
Eucgr.C03892 Eucalyptus grandis HOM05D003753 ORTHO05D005081 1.5e-14 82.4 50 76.0
FvH4_1g07300 Fragaria vesca HOM05D003753 ORTHO05D005081 1.9e-14 82.0 51 70.6
FAN23G2028 Fragaria x ananassa HOM05D003753 ORTHO05D005081 1.9e-14 82.0 51 70.6
FAN26G1206 Fragaria x ananassa HOM05D003753 ORTHO05D005081 1.9e-14 82.0 51 70.6
FAN26G3279 Fragaria x ananassa HOM05D003753 ORTHO05D005081 1.9e-14 82.0 51 70.6
FAN28G1000 Fragaria x ananassa HOM05D003753 ORTHO05D005081 1.9e-14 82.0 51 70.6
Hma1.2p1_0798F.1_g219790 Hydrangea macrophylla HOM05D003753 ORTHO05D005081 1.9e-14 82.0 53 71.7
PGR102G2098 Punica granatum HOM05D003753 ORTHO05D005081 1.9e-14 82.0 52 73.1
Zm00001eb163470 Zea mays HOM05D003753 ORTHO05D005081 1.9e-14 82.0 49 69.4
FAN19G2460 Fragaria x ananassa HOM05D003753 ORTHO05D005081 4.2e-14 80.9 51 68.6
TWI34G0041 Tripterygium wilfordii HOM05D003753 ORTHO05D005081 4.2e-14 80.9 52 71.2
Zm00001eb354080 Zea mays HOM05D003753 ORTHO05D005081 5.5e-14 80.5 49 67.3
Duzib150G1398 Durio zibethinus HOM05D003753 ORTHO05D005081 1.2e-13 79.3 50 70.0
Potri.007G094000 Populus trichocarpa HOM05D003753 ORTHO05D005081 1.2e-13 79.3 52 69.2
Rhsim03G0233000 Rhododendron simsii HOM05D003753 ORTHO05D005081 1.2e-13 79.3 49 69.4
A07p01230 Brassica napus HOM05D003753 ORTHO05D005081 1.6e-13 79.0 62 64.5
MBI06_g13419_MAGBIO Magnolia biondii HOM05D003753 ORTHO05D005081 1.6e-13 79.0 50 72.0
MBI06_g38946_MAGBIO Magnolia biondii HOM05D003753 ORTHO05D005081 1.6e-13 79.0 50 72.0
Prupe.7G211000 Prunus persica HOM05D003753 ORTHO05D005081 1.6e-13 79.0 50 72.0
unitig_699.g19554 Utricularia gibba HOM05D003753 ORTHO05D005081 1.6e-13 79.0 52 69.2
Os11g0134500 Oryza sativa ssp. japonica HOM05D003753 ORTHO05D005081 2.1e-13 78.6 49 67.3
Cfa003094 Carpinus fangiana HOM05D003753 ORTHO05D005081 2.7e-13 78.2 50 70.0
ClCG03G015660 Citrullus lanatus HOM05D003753 ORTHO05D005081 2.7e-13 78.2 52 67.3
Duzib187G1746 Durio zibethinus HOM05D003753 ORTHO05D005081 2.7e-13 78.2 50 68.0
Gohir.A07G010600 Gossypium hirsutum HOM05D003753 ORTHO05D005081 2.7e-13 78.2 50 70.0
Gohir.D07G010900 Gossypium hirsutum HOM05D003753 ORTHO05D005081 2.7e-13 78.2 50 70.0
Thecc.09G090200 Theobroma cacao HOM05D003753 ORTHO05D005081 2.7e-13 78.2 50 70.0
Atru.chr7.1581 Acer truncatum HOM05D003753 ORTHO05D005081 3.6e-13 77.8 49 75.5
COL.COLO4_18208 Corchorus olitorius HOM05D003753 ORTHO05D005081 3.6e-13 77.8 50 70.0
DCAR_011977 Daucus carota HOM05D003753 ORTHO05D005081 3.6e-13 77.8 52 69.2
MD02G1077800 Malus domestica HOM05D003753 ORTHO05D005081 3.6e-13 77.8 50 72.0
MD15G1206400 Malus domestica HOM05D003753 ORTHO05D005081 3.6e-13 77.8 50 72.0
RcHm_v2.0_Chr2g0093231 Rosa chinensis HOM05D003753 ORTHO05D005081 3.6e-13 77.8 52 69.2
CANSAT56G3520 Cannabis sativa HOM05D003753 ORTHO05D005081 4.7e-13 77.4 50 70.0
Ciclev10010770m.g Citrus clementina HOM05D003753 ORTHO05D005081 4.7e-13 77.4 52 67.3
Glyma.08G104700 Glycine max HOM05D003753 ORTHO05D005081 4.7e-13 77.4 50 70.0
Mapoly0090s0067 Marchantia polymorpha HOM05D003753 ORTHO05D005081 4.7e-13 77.4 52 71.2
TAR624G1221 Trochodendron aralioides HOM05D003753 ORTHO05D005081 4.7e-13 77.4 50 70.0
CSS0033183 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 6.1e-13 77.0 52 69.2
Dinv42315 Davidia involucrata HOM05D003753 ORTHO05D005081 6.1e-13 77.0 50 72.0
Glyma.05G147800 Glycine max HOM05D003753 ORTHO05D005081 6.1e-13 77.0 50 70.0
QL02p062809 Quercus lobata HOM05D003753 ORTHO05D005081 6.1e-13 77.0 50 70.0
Sabra07G0077800 Salix brachista HOM05D003753 ORTHO05D005081 6.1e-13 77.0 52 69.2
SEGI_14219 Sequoiadendron giganteum HOM05D003753 ORTHO05D005081 6.1e-13 77.0 52 73.1
Actinidia25255 Actinidia chinensis HOM05D003753 ORTHO05D005081 8.0e-13 76.6 50 70.0
arahy.Tifrunner.gnm1.ann1.D26Z0K Arachis hypogaea HOM05D003753 ORTHO05D005081 8.0e-13 76.6 50 70.0
Gorai.001G011300 Gossypium raimondii HOM05D003753 ORTHO05D005081 8.0e-13 76.6 50 68.0
Lj7A675G38 Lonicera japonica HOM05D003753 ORTHO05D005081 8.0e-13 76.6 50 72.0
Actinidia29885 Actinidia chinensis HOM05D003753 ORTHO05D005081 1.0e-12 76.3 50 68.0
arahy.Tifrunner.gnm1.ann1.JW8PS1 Arachis hypogaea HOM05D003753 ORTHO05D005081 1.0e-12 76.3 50 68.0
CSS0005601 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 1.0e-12 76.3 50 70.0
Ciclev10004888m.g Citrus clementina HOM05D003753 ORTHO05D005081 1.0e-12 76.3 52 67.3
SalBow6G3809 Salvia bowleyana HOM05D003753 ORTHO05D005081 1.0e-12 76.3 50 70.0
Sed0008570 Sechium edule HOM05D003753 ORTHO05D005081 1.0e-12 76.3 52 65.4
CiPaw.08G138800 Carya illinoinensis HOM05D003753 ORTHO05D005081 1.4e-12 75.9 50 70.0
Migut.J00089 Erythranthe guttata HOM05D003753 ORTHO05D005081 1.4e-12 75.9 52 71.2
Nitab4.5_0005634g0050 Nicotiana tabacum HOM05D003753 ORTHO05D005081 1.4e-12 75.9 50 66.0
Nitab4.5_0011030g0020 Nicotiana tabacum HOM05D003753 ORTHO05D005081 1.4e-12 75.9 50 66.0
Peaxi162Scf00083g00426 Petunia axillaris HOM05D003753 ORTHO05D005081 1.4e-12 75.9 50 68.0
Potri.005G074400 Populus trichocarpa HOM05D003753 ORTHO05D005081 1.4e-12 75.9 50 70.0
Cc06_g11340 Coffea canephora HOM05D003753 ORTHO05D005081 1.8e-12 75.5 50 72.0
Phvul.008G006800 Phaseolus vulgaris HOM05D003753 ORTHO05D005081 1.8e-12 75.5 50 68.0
Sed0009681 Sechium edule HOM05D003753 ORTHO05D005081 1.8e-12 75.5 52 65.4
Sc18g0002060 Simmondsia chinensis HOM05D003753 ORTHO05D005081 1.8e-12 75.5 50 70.0
ATR0807G172 Amborella trichopoda HOM05D003753 ORTHO05D005081 2.3e-12 75.1 52 67.3
CAN.G732.16 Capsicum annuum HOM05D003753 ORTHO05D005081 2.3e-12 75.1 50 70.0
CsaV3_1G040350 Cucumis sativus L. HOM05D003753 ORTHO05D005081 3.0e-12 74.7 52 65.4
Pp3c12_16950 Physcomitrium patens HOM05D003753 ORTHO05D005081 3.0e-12 74.7 52 65.4
VMungo0251G1718 Vigna mungo HOM05D003753 ORTHO05D005081 3.0e-12 74.7 50 68.0
A09p12430 Brassica napus HOM05D003753 ORTHO05D005081 4.0e-12 74.3 52 67.3
BraA09t36888Z Brassica rapa HOM05D003753 ORTHO05D005081 4.0e-12 74.3 52 67.3
Dinv36761 Davidia involucrata HOM05D003753 ORTHO05D005081 4.0e-12 74.3 50 70.0
Lj4g0022105 Lotus japonicus HOM05D003753 ORTHO05D005081 4.0e-12 74.3 50 66.0
Nn8g38881 Nelumbo nucifera HOM05D003753 ORTHO05D005081 4.0e-12 74.3 50 68.0
Aqoxy7G01225 Aquilegia oxysepala HOM05D003753 ORTHO05D005081 5.2e-12 73.9 50 66.0
MSTRG.18971 Avicennia marina HOM05D003753 ORTHO05D005081 5.2e-12 73.9 50 68.0
Lalb_Chr07g0187091 Lupinus albus HOM05D003753 ORTHO05D005081 5.2e-12 73.9 50 66.0
Lalb_Chr13g0294391 Lupinus albus HOM05D003753 ORTHO05D005081 5.2e-12 73.9 50 66.0
Psat7g005120 Pisum sativum HOM05D003753 ORTHO05D005081 5.2e-12 73.9 50 66.0
GSVIVG01015210001 Vitis vinifera HOM05D003753 ORTHO05D005081 5.2e-12 73.9 50 68.0
Hma1.2p1_1593F.1_g292630 Hydrangea macrophylla HOM05D003753 ORTHO05D005081 6.8e-12 73.6 50 64.0
HPP92_012451 Vanilla planifolia HOM05D003753 ORTHO05D005081 6.8e-12 73.6 49 67.3
MELO3C015462.2 Cucumis melo HOM05D003753 ORTHO05D005081 8.8e-12 73.2 52 61.5
SGA_v2.0_scaffold85G26676 Striga asiatica HOM05D000860 ORTHO05D003230 1.2e-11 72.8 52 65.4
PGSC0003DMG400013154 Solanum tuberosum HOM05D003753 ORTHO05D005081 1.5e-11 72.4 50 68.0
SGA_v2.0_scaffold75G25039 Striga asiatica HOM05D003753 ORTHO05D005081 1.5e-11 72.4 50 66.0
Ca_18022_v3 Cicer arietinum L. HOM05D003753 ORTHO05D005081 2.0e-11 72.0 50 64.0
Lsat_1_v5_gn_2_117981 Lactuca sativa HOM05D003753 ORTHO05D005081 2.0e-11 72.0 50 68.0
Solyc07g039200.4 Solanum lycopersicum HOM05D003753 ORTHO05D005081 2.0e-11 72.0 50 68.0
Sopen07g017550 Solanum pennellii HOM05D003753 ORTHO05D005081 2.0e-11 72.0 50 68.0
CDE06G0756 Ceratophyllum demersum HOM05D003753 ORTHO05D005081 2.6e-11 71.6 50 66.0
vmacro06286 Vaccinium macrocarpon HOM05D003753 ORTHO05D005081 2.6e-11 71.6 50 64.0
vmacro23429 Vaccinium macrocarpon HOM05D003753 ORTHO05D005081 2.6e-11 71.6 50 64.0
CiPaw.08G159100 Carya illinoinensis HOM05D003753 ORTHO05D005081 3.4e-11 71.2 50 66.0
CDE08G0675 Ceratophyllum demersum HOM05D003753 ORTHO05D005081 3.4e-11 71.2 50 66.0
Hund06681 Selenicereus undatus HOM05D003753 ORTHO05D005081 4.4e-11 70.9 50 68.0
BcaC05g28541 Brassica carinata HOM05D003753 ORTHO05D005081 5.7e-11 70.5 50 72.0
TPR.G17083 Trifolium pratense HOM05D003753 ORTHO05D005081 5.7e-11 70.5 50 62.0
Ah.13g077350 Amaranthus hybridus HOM05D003753 ORTHO05D005081 1.7e-10 68.9 65 55.4
AUR62027495 Chenopodium quinoa HOM05D003753 ORTHO05D005081 2.2e-10 68.6 50 66.0
Manes.08G173100 Manihot esculenta HOM05D003753 ORTHO05D005081 2.2e-10 68.6 49 63.3
Medtr8g080700 Medicago truncatula HOM05D003753 ORTHO05D005081 2.8e-10 68.2 50 60.0
BcaC06g36597 Brassica carinata HOM05D003753 ORTHO05D005081 3.7e-10 67.8 57 61.4
Lj4g0004391 Lotus japonicus HOM05D003753 ORTHO05D005081 3.7e-10 67.8 51 58.8
Lsat_1_v5_gn_8_87641 Lactuca sativa HOM05D003753 ORTHO05D005081 4.8e-10 67.4 50 66.0
AagrBONN_evm.TU.Sc2ySwM_344.2490 Anthoceros agrestis HOM05D003753 ORTHO05D005081 6.3e-10 67.0 50 58.0
EL10Ac8g19226 Beta vulgaris HOM05D003753 ORTHO05D005081 6.3e-10 67.0 52 61.5
AUR62033985 Chenopodium quinoa HOM05D003753 ORTHO05D005081 6.3e-10 67.0 50 64.0
ECA236G2053 Erigeron canadensis HOM05D003753 ORTHO05D005081 6.3e-10 67.0 50 66.0
SMO169G0114 Selaginella moellendorffii HOM05D003753 ORTHO05D005081 8.3e-10 66.6 51 58.8
CBR_g58801 Chara braunii HOM05D003753 ORTHO05D005081 1.1e-09 66.2 50 58.0
TAR626G1816 Trochodendron aralioides HOM05D003753 ORTHO05D005081 1.4e-09 65.9 50 62.0
Sopen05g009090 Solanum pennellii HOM05D003753 ORTHO05D005081 1.8e-09 65.5 50 62.0
MCO09G725 Micromonas commoda HOM05D003753 ORTHO05D005081 2.4e-09 65.1 64 50.0
Solyc05g014090.3 Solanum lycopersicum HOM05D003753 ORTHO05D005081 2.4e-09 65.1 50 62.0
Solyc05g025630.3 Solanum lycopersicum HOM05D003753 ORTHO05D005081 2.4e-09 65.1 50 62.0
SGA_v2.0_scaffold119G32713 Striga asiatica HOM05D003753 ORTHO05D005081 2.4e-09 65.1 52 59.6
C07p02380 Brassica napus HOM05D003753 ORTHO05D005081 3.1e-09 64.7 52 65.4
BolC7t40644H Brassica oleracea HOM05D003753 ORTHO05D005081 3.1e-09 64.7 59 59.3
Medtr5g024090 Medicago truncatula HOM05D003753 ORTHO05D005081 4.1e-09 64.3 50 60.0
arahy.Tifrunner.gnm1.ann1.WXAY6T Arachis hypogaea HOM05D003753 ORTHO05D005081 7.0e-09 63.5 42 61.9
Sopen05g009100 Solanum pennellii HOM05D003753 ORTHO05D005081 7.0e-09 63.5 50 60.0
BcaB03g16742 Brassica carinata HOM05D003753 ORTHO05D005081 9.1e-09 63.2 32 87.5
Sopen05g016940 Solanum pennellii HOM05D003753 ORTHO05D005081 1.2e-08 62.8 50 60.0
Solyc05g018780.1 Solanum lycopersicum HOM05D003753 ORTHO05D005081 3.5e-08 61.2 50 58.0
SHI20703 Sapria himalayana HOM05D003753 ORTHO05D005081 1.0e-07 59.7 52 57.7
BraA07t27911Z Brassica rapa HOM05D003753 ORTHO05D005081 1.3e-07 59.3 45 68.9
Cfa024003 Carpinus fangiana HOM05D003753 ORTHO05D123424 2.3e-07 58.5 41 58.5
CSS0046684 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 2.9e-07 58.2 52 59.6
PRCOL_00005408 Prasinoderma coloniale HOM05D003753 ORTHO05D005081 5.0e-07 57.4 57 49.1
Sabra05G0061300 Salix brachista HOM05D003753 ORTHO05D005081 5.0e-07 57.4 50 60.0
Thhalv10022672m.g Eutrema salsugineum HOM05D003753 ORTHO05D005081 8.6e-07 56.6 51 52.9
Cre17.g724850 Chlamydomonas reinhardtii HOM05D003753 ORTHO05D005081 1.1e-06 56.2 50 54.0
Sp3g32920 Schrenkiella parvula HOM05D003753 ORTHO05D005081 4.2e-06 54.3 51 52.9


User provided reference genes

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