Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35981 Brassica carinata HOM05D003539 ORTHO05D004111 9.9e-121 436.8 221 100.0
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 4.2e-111 404.8 244 87.3
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 3.4e-97 358.6 189 97.4
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 1.3e-75 287.0 187 78.1
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 3.7e-51 205.7 194 60.8
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.2e-49 200.7 171 66.1
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 4.2e-47 192.2 191 59.2
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 9.5e-47 191.0 202 56.4
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 2.7e-46 189.5 199 53.3
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 6.1e-46 188.3 195 55.4
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 7.5e-44 181.4 191 50.8
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 2.4e-42 176.4 198 52.0
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 1.2e-41 174.1 199 51.3
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.6e-41 173.7 212 49.5
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 1.6e-41 173.7 197 50.3
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 2.3e-40 169.9 196 49.5
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 1.6e-38 163.7 197 48.7
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 3.6e-38 162.5 192 50.5
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 6.1e-38 161.8 204 46.6
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 1.4e-34 150.6 190 45.8
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 7.0e-34 148.3 190 45.3
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 7.0e-34 148.3 190 45.3
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 7.0e-34 148.3 190 45.3
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 7.0e-34 148.3 192 44.3
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 9.2e-34 147.9 190 45.3
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 3.5e-33 146.0 197 43.7
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 3.5e-33 146.0 203 44.8
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 5.9e-33 145.2 198 42.9
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 7.8e-33 144.8 195 47.7
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 7.8e-33 144.8 198 41.4
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 1.0e-32 144.4 169 51.5
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 1.0e-32 144.4 198 41.4
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 5.0e-32 142.1 195 41.5
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 8.6e-32 141.4 198 39.4
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 8.6e-32 141.4 202 40.1
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 1.5e-31 140.6 195 41.0
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 1.9e-31 140.2 195 40.5
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 1.9e-31 140.2 195 40.5
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 1.9e-31 140.2 195 40.5
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 1.9e-31 140.2 196 41.8
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.9e-31 140.2 195 42.1
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 2.5e-31 139.8 195 40.5
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 2.5e-31 139.8 195 40.0
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 3.3e-31 139.4 195 40.5
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 3.3e-31 139.4 195 40.0
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 3.3e-31 139.4 199 39.7
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 5.6e-31 138.7 195 44.6
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 5.6e-31 138.7 196 42.3
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 5.6e-31 138.7 198 38.9
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 7.3e-31 138.3 196 40.8
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 1.2e-30 137.5 196 39.3
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 1.6e-30 137.1 196 41.8
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 2.1e-30 136.7 195 39.5
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 2.8e-30 136.3 195 40.5
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 3.6e-30 136.0 194 40.2
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 4.7e-30 135.6 198 37.9
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 6.2e-30 135.2 210 42.4
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.2e-30 135.2 199 40.7
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 1.0e-29 134.4 195 42.6
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 1.4e-29 134.0 200 41.0
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 1.4e-29 134.0 196 41.3
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 1.8e-29 133.7 210 42.4
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 1.8e-29 133.7 195 43.6
Actinidia02872 Actinidia chinensis HOM05D003539 ORTHO05D004111 2.3e-29 133.3 197 40.6
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 2.3e-29 133.3 196 41.3
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 5.2e-29 132.1 195 39.0
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 8.9e-29 131.3 195 41.5
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 8.9e-29 131.3 199 40.2
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 1.2e-28 131.0 195 40.0
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 1.2e-28 131.0 196 43.9
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 2.0e-28 130.2 211 39.8
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 2.6e-28 129.8 199 39.7
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 9.8e-28 127.9 196 43.4
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 9.8e-28 127.9 196 40.8
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 1.7e-27 127.1 197 43.1
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 2.2e-27 126.7 191 39.8
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 2.2e-27 126.7 201 36.8
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 2.2e-27 126.7 195 41.0
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 2.2e-27 126.7 201 38.8
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 2.9e-27 126.3 197 40.1
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 2.9e-27 126.3 196 41.3
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 3.7e-27 125.9 210 41.0
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 3.7e-27 125.9 201 41.3
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 6.4e-27 125.2 201 40.8
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 8.3e-27 124.8 202 39.1
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 1.1e-26 124.4 199 38.2
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 1.4e-26 124.0 196 42.3
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 1.4e-26 124.0 201 40.8
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 1.4e-26 124.0 195 40.0
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 1.4e-26 124.0 195 40.0
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 1.9e-26 123.6 201 35.8
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 2.4e-26 123.2 219 37.9
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 3.2e-26 122.9 213 39.0
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 4.1e-26 122.5 193 38.3
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 4.1e-26 122.5 198 38.4
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 5.4e-26 122.1 195 37.9
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 1.2e-25 120.9 197 41.1
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 1.2e-25 120.9 202 36.1
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 1.2e-25 120.9 210 36.2
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 1.2e-25 120.9 210 36.2
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 1.6e-25 120.6 197 39.1
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 3.5e-25 119.4 205 38.5
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 3.5e-25 119.4 203 36.9
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 3.5e-25 119.4 195 39.5
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 4.6e-25 119.0 219 37.0
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 4.6e-25 119.0 214 32.7
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 6.0e-25 118.6 175 42.3
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 6.0e-25 118.6 196 38.3
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 7.8e-25 118.2 200 37.5
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 2.3e-24 116.7 208 35.6
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 3.0e-24 116.3 214 32.2
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 8.6e-24 114.8 216 35.2
Oeu000297.1 Olea europaea HOM05D003539 ORTHO05D004111 8.6e-24 114.8 195 37.4
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 1.9e-23 113.6 209 35.4
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 4.3e-23 112.5 190 39.5
Ciclev10010838m.g Citrus clementina HOM05D003539 ORTHO05D004111 5.6e-23 112.1 153 41.8
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 5.6e-23 112.1 190 40.0
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 5.6e-23 112.1 196 38.3
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 2.1e-22 110.2 142 45.1
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 3.6e-22 109.4 193 34.2
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.8e-21 107.1 196 37.8
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.3e-21 106.7 195 37.9
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 3.1e-21 106.3 195 37.4
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 3.1e-21 106.3 195 37.9
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 3.1e-21 106.3 204 39.7
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 6.8e-21 105.1 195 37.4
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 6.8e-21 105.1 195 37.4
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 2.0e-20 103.6 187 38.0
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 7.5e-20 101.7 216 34.3
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 1.7e-19 100.5 220 31.8
GSVIVG01026439001 Vitis vinifera HOM05D003539 ORTHO05D004111 4.9e-19 99.0 168 39.9
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 6.4e-19 98.6 208 38.5
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 6.4e-19 98.6 202 35.1
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 8.3e-19 98.2 252 29.8
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 1.1e-18 97.8 49 100.0
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 1.4e-18 97.4 217 31.3
SHI13961 Sapria himalayana HOM05D003539 ORTHO05D004111 1.9e-18 97.1 222 33.3
DCAR_007549 Daucus carota HOM05D003539 ORTHO05D004111 2.4e-18 96.7 149 38.9
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 4.1e-18 95.9 193 35.2
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 1.6e-17 94.0 210 33.3
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 3.5e-17 92.8 195 32.8
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 4.6e-17 92.4 150 38.0
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 1.3e-16 90.9 217 28.6
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 3.0e-16 89.7 196 35.2
RcHm_v2.0_Chr2g0096841 Rosa chinensis HOM05D003539 ORTHO05D004111 3.0e-16 89.7 179 37.4
Gohir.A02G119802 Gossypium hirsutum HOM05D003539 ORTHO05D004111 6.6e-16 88.6 138 38.4
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 1.1e-15 87.8 121 43.8
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 1.9e-15 87.0 174 35.6
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 5.6e-15 85.5 215 29.8
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 5.6e-15 85.5 215 29.8
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 7.3e-15 85.1 216 27.8
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 1.2e-14 84.3 215 29.3
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 8.1e-14 81.6 193 32.1
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 7.6e-12 75.1 207 33.8
EL10Ac6g14558 Beta vulgaris HOM05D003539 ORTHO05D004111 9.9e-12 74.7 103 39.8
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 5.4e-10 68.9 186 28.5
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 1.2e-09 67.8 216 25.5
Cre03.g207950 Chlamydomonas reinhardtii HOM05D003539 ORTHO05D004111 2.1e-09 67.0 181 25.4
HanXRQChr05g0145981 Helianthus annuus HOM05D003539 ORTHO05D004111 7.8e-09 65.1 138 32.6
CBR_g23271 Chara braunii HOM05D003539 ORTHO05D004111 1.3e-08 64.3 176 28.4
PSO782G3432 Papaver somniferum HOM05D003539 ORTHO05D004111 1.3e-08 64.3 186 31.2
Cpa.g.sc7.212 Carica papaya HOM05D003539 ORTHO05D004111 3.9e-08 62.8 136 31.6
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 6.2e-06 55.5 50 52.0


User provided reference genes

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