Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35980 Brassica carinata HOM05D003539 ORTHO05D004111 1.4e-153 546.2 269 100.0
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 4.3e-126 454.9 267 88.0
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 1.6e-125 453.0 261 88.9
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 8.6e-119 430.6 276 83.0
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 2.1e-88 329.7 275 66.9
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 6.0e-88 328.2 267 68.2
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 1.3e-87 327.0 277 67.1
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 2.3e-87 326.2 277 65.7
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 1.9e-86 323.2 277 65.7
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 4.3e-86 322.0 277 65.3
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 1.6e-85 320.1 277 65.3
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 1.2e-83 313.9 277 63.9
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 1.5e-83 313.5 275 64.7
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.0e-82 310.8 277 62.8
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 1.3e-82 310.5 277 62.8
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 1.3e-82 310.5 268 64.9
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 1.3e-79 300.4 282 62.8
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 1.3e-79 300.4 275 61.8
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 3.0e-79 299.3 279 63.1
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 3.9e-79 298.9 282 62.8
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 5.1e-79 298.5 278 62.6
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 1.9e-78 296.6 277 61.4
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 9.6e-78 294.3 248 67.7
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 3.7e-77 292.4 274 61.7
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 3.7e-77 292.4 278 60.1
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 8.2e-77 291.2 282 61.0
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 3.4e-75 285.8 278 59.7
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 3.4e-75 285.8 278 59.7
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 1.1e-73 280.8 275 59.3
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 1.2e-72 277.3 305 55.7
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 1.0e-66 257.7 271 55.7
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 6.5e-66 255.0 206 69.9
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 3.2e-65 252.7 256 54.7
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 8.8e-63 244.6 256 52.3
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 1.1e-62 244.2 259 51.4
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 1.5e-62 243.8 256 53.5
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.5e-62 243.8 275 51.3
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 2.0e-62 243.4 256 50.4
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 3.3e-62 242.7 256 51.6
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 4.4e-62 242.3 267 54.7
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 1.3e-61 240.7 256 52.7
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 1.7e-61 240.4 257 53.7
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 1.7e-61 240.4 276 51.1
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 2.8e-61 239.6 255 52.5
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 3.7e-61 239.2 257 52.5
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 4.8e-61 238.8 257 52.5
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 6.3e-61 238.4 262 51.5
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 8.2e-61 238.0 277 51.3
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 8.2e-61 238.0 256 50.4
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 8.2e-61 238.0 256 51.6
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 1.4e-60 237.3 276 50.0
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 1.8e-60 236.9 254 54.7
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 2.4e-60 236.5 257 49.8
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 4.1e-60 235.7 257 49.8
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 5.3e-60 235.3 276 49.3
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 5.3e-60 235.3 257 49.8
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 1.2e-59 234.2 268 50.7
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 1.5e-59 233.8 256 51.6
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 2.0e-59 233.4 276 50.0
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 2.6e-59 233.0 257 51.0
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 4.5e-59 232.3 274 48.5
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 4.5e-59 232.3 262 50.0
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 2.9e-58 229.6 274 49.6
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 3.8e-58 229.2 256 50.8
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 5.0e-58 228.8 257 49.4
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 5.0e-58 228.8 257 49.0
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 8.5e-58 228.0 270 47.8
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 1.1e-57 227.6 262 50.4
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 1.4e-57 227.3 283 49.1
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 1.4e-57 227.3 256 50.0
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 1.9e-57 226.9 261 48.7
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 3.2e-57 226.1 258 51.2
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 3.2e-57 226.1 263 48.7
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 5.5e-57 225.3 257 50.6
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 7.2e-57 224.9 236 52.1
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 7.2e-57 224.9 280 47.1
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 7.2e-57 224.9 258 52.3
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 7.2e-57 224.9 276 46.4
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 1.6e-56 223.8 261 50.6
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 1.6e-56 223.8 271 48.3
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 6.1e-56 221.9 251 49.8
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 7.9e-56 221.5 255 49.4
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 1.4e-55 220.7 286 46.5
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 1.8e-55 220.3 257 48.6
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 2.3e-55 219.9 257 50.2
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 3.9e-55 219.2 255 50.2
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 6.7e-55 218.4 275 47.3
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 6.7e-55 218.4 263 46.8
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 2.6e-54 216.5 261 48.7
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 3.3e-54 216.1 259 49.0
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 3.3e-54 216.1 280 46.4
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 9.7e-54 214.5 261 47.5
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 2.2e-53 213.4 282 47.2
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.8e-53 213.0 255 50.2
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 4.8e-53 212.2 277 45.8
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 6.3e-53 211.8 256 50.4
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 1.8e-52 210.3 282 46.5
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 2.4e-52 209.9 260 48.1
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 2.4e-52 209.9 255 47.8
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 3.1e-52 209.5 254 49.2
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 9.1e-52 208.0 254 48.4
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 3.5e-51 206.1 188 63.8
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 5.9e-51 205.3 260 45.4
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 7.7e-51 204.9 255 47.5
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 1.0e-50 204.5 254 48.0
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 1.3e-50 204.1 258 46.1
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 1.3e-50 204.1 251 47.4
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 2.9e-50 203.0 157 68.8
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 2.9e-50 203.0 251 47.4
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 3.8e-50 202.6 253 46.2
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 6.5e-50 201.8 253 45.8
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 3.2e-49 199.5 264 44.3
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 5.5e-49 198.7 259 45.6
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 1.2e-48 197.6 162 58.6
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 1.6e-48 197.2 255 45.1
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 2.7e-48 196.4 255 49.0
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 4.7e-48 195.7 265 46.0
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 8.0e-48 194.9 271 42.8
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 1.8e-47 193.7 271 43.2
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.3e-47 193.4 274 44.2
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 2.3e-47 193.4 271 42.4
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 6.7e-47 191.8 271 45.8
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 8.8e-47 191.4 228 47.4
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 8.8e-47 191.4 279 43.7
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 1.5e-46 190.7 249 46.2
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 7.5e-46 188.3 250 43.2
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 1.7e-45 187.2 274 43.1
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 2.8e-45 186.4 273 42.9
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 4.8e-45 185.7 274 43.1
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 1.1e-44 184.5 256 43.0
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 1.6e-43 180.6 281 40.9
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 1.3e-42 177.6 258 42.2
Actinidia20762 Actinidia chinensis HOM05D003539 ORTHO05D004111 8.5e-42 174.9 209 50.2
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 8.5e-42 174.9 230 44.3
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 8.5e-42 174.9 230 44.3
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 8.5e-42 174.9 230 45.2
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 1.1e-41 174.5 298 42.3
BolC4t27866H Brassica oleracea HOM05D003539 ORTHO05D004111 1.0e-39 167.9 174 59.2
Zm00001eb226160 Zea mays HOM05D003539 ORTHO05D004111 2.3e-39 166.8 260 41.9
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 5.7e-38 162.2 263 37.6
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 9.8e-38 161.4 251 39.0
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 7.0e-36 155.2 254 39.4
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 2.5e-33 146.7 263 35.7
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 5.5e-33 145.6 260 36.5
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 7.2e-33 145.2 280 37.1
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 1.6e-32 144.1 268 35.4
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 1.6e-32 144.1 268 35.4
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 1.8e-31 140.6 145 51.7
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 7.5e-30 135.2 255 36.5
DCAR_007550 Daucus carota HOM05D003539 ORTHO05D004111 5.0e-26 122.5 168 46.4
Cre03.g207950 Chlamydomonas reinhardtii HOM05D003539 ORTHO05D004111 9.5e-25 118.2 309 29.1
SalBow7G0297 Salvia bowleyana HOM05D003539 ORTHO05D004111 1.3e-21 107.8 163 39.9
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 4.9e-21 105.9 74 75.7
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 4.1e-20 102.8 77 58.4
Cpa.g.sc7.213 Carica papaya HOM05D003539 ORTHO05D004111 9.2e-20 101.7 78 60.3
PRCOL_00004831 Prasinoderma coloniale HOM05D003539 ORTHO05D004111 3.9e-18 96.3 242 29.8
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 8.0e-16 88.6 77 54.5
arahy.Tifrunner.gnm1.ann1.PJLZ8M Arachis hypogaea HOM05D003539 ORTHO05D004111 3.5e-11 73.2 114 43.9
C03p59690 Brassica napus HOM05D003539 ORTHO05D004111 1.0e-10 71.6 48 70.8
BolC3t18231H Brassica oleracea HOM05D003539 ORTHO05D004111 1.0e-10 71.6 48 70.8
CBR_g23267 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-10 70.9 197 29.9
Aa31sc1240G10 Aethionema arabicum HOM05D003539 ORTHO05D004111 4.0e-07 59.7 47 59.6
GSVIVG01026437001 Vitis vinifera HOM05D003539 ORTHO05D004111 3.4e-06 56.6 47 57.4
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 7.5e-06 55.5 73 39.7


User provided reference genes

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