Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 0.0e+00 1212.6 611 100.0
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 7.1e-302 1040.0 553 96.0
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 1.7e-215 753.1 420 92.9
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 3.3e-182 642.5 601 60.7
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.6e-181 640.2 580 63.3
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 2.8e-181 639.4 577 64.1
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 4.7e-181 638.6 587 62.9
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 3.4e-179 632.5 584 61.1
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 7.8e-176 621.3 592 60.5
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.1e-174 617.5 612 59.0
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 2.8e-173 612.8 595 60.0
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 7.6e-171 604.7 594 59.4
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 1.1e-169 600.9 600 58.3
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 6.0e-168 595.1 595 57.3
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 7.3e-166 588.2 599 56.9
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 1.2e-163 580.9 595 58.2
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 3.2e-161 572.8 599 57.3
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 2.1e-160 570.1 589 55.3
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 2.0e-155 553.5 542 60.9
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 2.6e-155 553.1 594 56.2
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 5.8e-155 552.0 594 56.2
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 2.9e-154 549.7 586 55.5
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 3.8e-154 549.3 587 55.7
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 1.3e-151 540.8 580 55.5
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 4.3e-150 535.8 608 51.6
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 1.9e-145 520.4 586 53.1
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 9.7e-142 508.1 593 52.6
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 1.6e-141 507.3 590 52.7
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 4.8e-141 505.8 614 50.7
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 8.2e-141 505.0 591 52.5
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 1.1e-134 484.6 622 46.9
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 8.2e-133 478.4 614 45.8
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 2.2e-130 470.3 598 47.2
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 2.5e-129 466.8 616 46.6
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 2.7e-128 463.4 608 46.2
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 4.7e-128 462.6 608 46.2
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 6.1e-128 462.2 613 45.7
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 3.9e-127 459.5 632 46.2
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 2.0e-126 457.2 590 50.2
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 7.4e-126 455.3 600 44.8
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 9.7e-126 454.9 613 45.4
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 1.7e-125 454.1 606 46.0
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 8.2e-125 451.8 616 45.9
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 1.1e-124 451.4 605 44.5
BcaC06g35980 Brassica carinata HOM05D003539 ORTHO05D004111 1.4e-124 451.1 261 88.9
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 4.1e-124 449.5 612 45.1
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 7.0e-124 448.7 608 43.9
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 1.2e-123 448.0 550 50.0
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 2.0e-123 447.2 600 44.3
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 2.6e-123 446.8 600 45.5
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 1.0e-122 444.9 604 45.2
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 2.2e-122 443.7 619 44.6
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 2.2e-122 443.7 616 44.5
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 2.9e-122 443.4 648 44.3
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 8.5e-122 441.8 602 44.2
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 1.9e-121 440.7 608 43.4
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 1.9e-121 440.7 597 45.4
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 4.2e-121 439.5 611 43.4
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 2.3e-119 433.7 581 44.9
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 5.2e-119 432.6 595 44.7
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 2.0e-118 430.6 578 47.4
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 2.6e-118 430.3 624 44.7
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 4.4e-118 429.5 590 45.9
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 5.7e-118 429.1 592 45.3
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 5.7e-118 429.1 592 45.9
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 4.8e-117 426.0 614 44.1
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 8.2e-117 425.2 308 75.0
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 3.1e-116 423.3 592 45.4
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 5.3e-116 422.5 673 40.0
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 5.3e-116 422.5 531 48.4
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.0e-116 422.2 594 44.3
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 1.6e-115 421.0 508 48.0
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 2.0e-115 420.6 603 43.9
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 3.5e-115 419.9 637 42.2
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 1.0e-114 418.3 702 39.2
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 1.3e-114 417.9 592 43.4
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 1.3e-114 417.9 596 44.1
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 2.2e-114 417.2 695 38.7
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 3.8e-114 416.4 708 38.8
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 3.8e-114 416.4 604 42.5
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 5.5e-113 412.5 605 42.1
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 4.0e-111 406.4 677 38.4
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 6.7e-111 405.6 548 46.4
BcaC06g35981 Brassica carinata HOM05D003539 ORTHO05D004111 1.5e-110 404.4 244 87.3
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 3.3e-110 403.3 628 41.6
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 2.2e-109 400.6 613 42.4
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 1.1e-108 398.3 612 42.6
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 1.4e-108 397.9 625 40.0
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 1.8e-108 397.5 609 41.9
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 9.1e-108 395.2 604 43.7
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 1.6e-107 394.4 593 43.2
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 4.5e-107 392.9 512 45.7
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 1.0e-106 391.7 625 42.2
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 1.3e-106 391.3 611 42.4
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 2.2e-106 390.6 605 42.5
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 2.9e-106 390.2 598 41.0
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 8.5e-106 388.7 627 38.9
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 1.5e-105 387.9 619 41.2
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 1.5e-105 387.9 607 42.3
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 4.2e-105 386.3 602 42.5
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 5.5e-105 386.0 634 40.7
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 7.2e-105 385.6 590 42.2
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 2.7e-104 383.6 605 39.2
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 3.6e-104 383.3 601 42.8
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 3.6e-104 383.3 614 42.3
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 6.1e-104 382.5 584 42.8
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 1.4e-103 381.3 514 44.7
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 1.8e-103 380.9 631 39.0
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 2.3e-103 380.6 582 42.6
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 4.0e-103 379.8 598 40.3
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 5.2e-103 379.4 575 44.0
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 6.8e-103 379.0 601 41.4
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 1.2e-102 378.3 636 42.0
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 1.5e-102 377.9 604 41.1
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 2.6e-102 377.1 605 41.2
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 4.4e-102 376.3 626 41.2
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 7.5e-102 375.6 606 40.3
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 7.5e-102 375.6 620 40.0
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 1.7e-101 374.4 601 39.8
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 3.7e-101 373.2 669 38.1
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 6.3e-101 372.5 625 41.0
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 1.8e-100 370.9 627 39.9
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 7.0e-100 369.0 625 40.8
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 9.1e-100 368.6 590 41.7
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 7.7e-99 365.5 554 43.0
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 3.8e-98 363.2 445 49.0
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 5.0e-98 362.8 636 40.4
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 1.1e-97 361.7 535 43.4
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 2.5e-97 360.5 578 40.3
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 5.5e-97 359.4 644 39.6
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 3.6e-96 356.7 602 40.7
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 1.1e-92 345.1 579 38.3
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 2.4e-92 344.0 576 38.5
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 2.4e-92 344.0 576 38.5
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 4.5e-91 339.7 427 50.1
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 5.0e-90 336.3 601 37.3
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 7.3e-89 332.4 527 40.0
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 6.1e-88 329.3 598 38.3
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 2.3e-87 327.4 583 39.1
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 2.6e-86 323.9 630 35.1
Zm00001eb226160 Zea mays HOM05D003539 ORTHO05D004111 1.1e-84 318.5 581 37.2
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 3.5e-83 313.5 620 37.9
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 2.8e-72 277.3 584 32.4
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 1.6e-64 251.5 579 32.6
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 8.1e-64 249.2 588 31.8
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 8.1e-64 249.2 588 31.8
Actinidia20762 Actinidia chinensis HOM05D003539 ORTHO05D004111 5.2e-63 246.5 297 47.8
BolC4t27866H Brassica oleracea HOM05D003539 ORTHO05D004111 1.2e-62 245.4 243 60.1
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 1.2e-59 235.3 606 30.7
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 3.6e-56 223.8 408 37.0
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 8.1e-56 222.6 352 38.9
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 2.9e-53 214.2 537 32.0
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.6e-48 198.4 360 37.5
DCAR_007550 Daucus carota HOM05D003539 ORTHO05D004111 4.8e-48 196.8 253 47.8
Actinidia02872 Actinidia chinensis HOM05D003539 ORTHO05D004111 4.0e-47 193.7 309 39.8
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 7.6e-46 189.5 322 38.8
SalBow7G0297 Salvia bowleyana HOM05D003539 ORTHO05D004111 2.1e-43 181.4 254 43.3
Cre03.g207950 Chlamydomonas reinhardtii HOM05D003539 ORTHO05D004111 1.3e-37 162.2 598 24.9
Oeu000297.1 Olea europaea HOM05D003539 ORTHO05D004111 8.2e-32 142.9 243 37.9
SHI13961 Sapria himalayana HOM05D003539 ORTHO05D004111 6.9e-31 139.8 341 33.4
Ciclev10010838m.g Citrus clementina HOM05D003539 ORTHO05D004111 7.9e-27 126.3 176 41.5
arahy.Tifrunner.gnm1.ann1.PJLZ8M Arachis hypogaea HOM05D003539 ORTHO05D004111 2.4e-23 114.8 152 46.1
GSVIVG01026439001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.2e-22 112.5 185 40.0
PRCOL_00004831 Prasinoderma coloniale HOM05D003539 ORTHO05D004111 2.6e-22 111.3 456 24.8
C03p59690 Brassica napus HOM05D003539 ORTHO05D004111 1.3e-21 109.0 281 34.2
PSO782G3432 Papaver somniferum HOM05D003539 ORTHO05D004111 1.7e-21 108.6 281 31.7
DCAR_007549 Daucus carota HOM05D003539 ORTHO05D004111 2.5e-20 104.8 176 36.9
Cpa.g.sc7.213 Carica papaya HOM05D003539 ORTHO05D004111 2.1e-19 101.7 78 60.3
Gohir.A02G119802 Gossypium hirsutum HOM05D003539 ORTHO05D004111 3.6e-19 100.9 153 39.2
BolC3t18231H Brassica oleracea HOM05D003539 ORTHO05D004111 4.6e-19 100.5 72 69.4
RcHm_v2.0_Chr2g0096841 Rosa chinensis HOM05D003539 ORTHO05D004111 1.3e-16 92.4 192 35.9
MCO15G598 Micromonas commoda HOM05D003539 ORTHO05D004111 4.8e-16 90.5 633 20.9
CBR_g23267 Chara braunii HOM05D000019 ORTHO05D000048 6.3e-16 90.1 181 35.4
CBR_g23271 Chara braunii HOM05D003539 ORTHO05D004111 9.1e-15 86.3 340 25.0
Cpa.g.sc7.212 Carica papaya HOM05D003539 ORTHO05D004111 7.7e-14 83.2 170 33.5
Cfa022001 Carpinus fangiana HOM05D003539 ORTHO05D004111 1.9e-12 78.6 116 41.4
EL10Ac6g14558 Beta vulgaris HOM05D003539 ORTHO05D004111 2.7e-11 74.7 103 39.8
HanXRQChr05g0145981 Helianthus annuus HOM05D003539 ORTHO05D004111 1.8e-07 62.0 137 32.1
Aa31sc1240G10 Aethionema arabicum HOM05D003539 ORTHO05D004111 9.1e-07 59.7 47 59.6
GSVIVG01026437001 Vitis vinifera HOM05D003539 ORTHO05D004111 7.7e-06 56.6 47 57.4


User provided reference genes

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