Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 1.4e-173 612.8 316 100.0
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 1.4e-173 612.8 316 100.0
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 7.9e-172 607.1 316 99.1
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 7.9e-172 607.1 316 99.1
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 1.8e-171 605.9 316 98.7
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 1.6e-169 599.4 316 97.2
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 1.0e-166 590.1 316 95.3
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 9.1e-160 567.0 299 95.7
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 2.0e-159 565.8 299 95.3
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 2.6e-159 565.5 299 95.0
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 2.6e-159 565.5 299 95.0
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 4.5e-159 564.7 316 91.5
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 3.6e-156 555.1 316 90.2
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 4.1e-152 541.6 316 88.3
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 2.5e-149 532.3 301 87.7
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 3.0e-147 525.4 314 85.4
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 7.4e-146 520.8 315 84.8
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 3.2e-141 505.4 316 82.0
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 1.6e-140 503.1 316 79.4
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 1.1e-133 480.3 314 74.2
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 2.1e-132 476.1 313 75.7
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 3.0e-131 472.2 316 73.4
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 3.0e-131 472.2 316 73.7
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 6.8e-131 471.1 316 73.7
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 1.2e-130 470.3 316 73.1
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 1.5e-130 469.9 310 73.5
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 2.2e-129 466.1 316 72.8
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 1.1e-128 463.8 314 72.3
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 1.4e-128 463.4 313 71.9
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 3.1e-128 462.2 316 71.5
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 4.1e-128 461.8 313 72.8
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 4.1e-128 461.8 314 71.0
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 4.1e-128 461.8 316 72.2
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 2.0e-127 459.5 313 72.2
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 5.9e-127 458.0 315 72.7
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 5.9e-127 458.0 311 72.7
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 7.7e-127 457.6 316 71.2
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 7.7e-127 457.6 316 70.9
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 1.0e-126 457.2 316 70.9
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 1.0e-126 457.2 316 70.6
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 5.0e-126 454.9 313 70.9
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 5.0e-126 454.9 299 73.2
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 1.1e-125 453.8 313 71.2
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 1.9e-125 453.0 312 71.5
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 4.2e-125 451.8 315 72.1
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 4.2e-125 451.8 314 69.7
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 5.5e-125 451.4 315 67.3
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 5.5e-125 451.4 314 70.7
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 7.2e-125 451.1 316 69.9
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 9.5e-125 450.7 310 71.6
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 1.6e-124 449.9 314 69.1
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 2.1e-124 449.5 314 69.7
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 2.8e-124 449.1 315 70.2
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 2.8e-124 449.1 257 85.2
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 1.5e-122 443.4 314 69.4
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 1.5e-122 443.4 314 68.8
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 2.0e-122 443.0 312 69.2
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 3.4e-122 442.2 316 69.9
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 5.7e-122 441.4 315 67.9
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 5.7e-122 441.4 314 67.2
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 7.5e-122 441.0 316 68.4
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 7.5e-122 441.0 316 68.7
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 7.5e-122 441.0 317 68.8
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 9.8e-122 440.7 315 67.6
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 9.8e-122 440.7 341 64.5
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 1.3e-121 440.3 315 70.2
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 1.3e-121 440.3 312 70.5
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 1.7e-121 439.9 316 68.0
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 2.8e-121 439.1 293 72.0
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 3.7e-121 438.7 312 68.3
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 4.9e-121 438.3 310 69.0
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 6.3e-121 438.0 310 67.4
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 6.3e-121 438.0 312 68.6
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 1.1e-120 437.2 310 69.0
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 2.4e-120 436.0 315 67.9
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 3.2e-120 435.6 309 69.6
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 4.1e-120 435.3 312 69.2
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 4.1e-120 435.3 310 68.7
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 5.4e-120 434.9 314 68.2
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 1.2e-119 433.7 309 69.6
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 2.7e-119 432.6 315 67.6
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 2.7e-119 432.6 316 67.1
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 3.5e-119 432.2 317 68.5
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 7.8e-119 431.0 316 67.1
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 2.5e-117 426.0 313 66.5
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 2.5e-117 426.0 305 69.8
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 3.3e-117 425.6 325 65.5
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 3.3e-117 425.6 325 65.5
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 3.3e-117 425.6 325 65.5
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 4.3e-117 425.2 315 67.6
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 7.3e-117 424.5 315 67.0
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 1.2e-116 423.7 314 66.9
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 1.2e-116 423.7 325 65.2
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 4.7e-116 421.8 312 66.0
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 6.1e-116 421.4 313 67.4
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 3.1e-115 419.1 325 64.3
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 3.1e-115 419.1 314 66.9
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 6.8e-115 417.9 335 63.6
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 1.2e-114 417.2 310 65.8
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 2.6e-114 416.0 294 68.7
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 3.4e-114 415.6 285 71.2
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 4.4e-114 415.2 341 60.7
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 1.3e-113 413.7 292 68.8
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 2.2e-113 412.9 306 67.0
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 2.9e-113 412.5 268 73.5
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 2.9e-113 412.5 312 66.0
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 3.7e-113 412.1 313 64.5
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 4.9e-113 411.8 316 64.2
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 2.4e-112 409.5 309 66.3
HPP92_017999 Vanilla planifolia HOM05D005183 ORTHO05D006684 3.2e-112 409.1 291 67.4
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 1.2e-111 407.1 316 64.6
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 2.0e-111 406.4 309 66.0
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 8.0e-108 394.4 294 66.3
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 8.0e-108 394.4 317 65.0
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 1.8e-107 393.3 314 62.7
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 3.1e-107 392.5 317 65.0
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 4.4e-106 388.7 326 64.1
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 2.2e-105 386.3 253 71.5
Pp3c4_19370 Physcomitrium patens HOM05D005183 ORTHO05D006684 7.3e-93 344.7 323 56.0
Actinidia31290 Actinidia chinensis HOM05D005183 ORTHO05D006684 9.9e-90 334.3 299 57.2
Lalb_Chr02g0155161 Lupinus albus HOM05D005183 ORTHO05D006684 9.9e-90 334.3 230 69.1
Mapoly0098s0050 Marchantia polymorpha HOM05D005183 ORTHO05D006684 1.1e-88 330.9 298 56.0
SMO367G0957 Selaginella moellendorffii HOM05D005183 ORTHO05D006684 1.1e-88 330.9 319 53.6
Rhsim11G0063800 Rhododendron simsii HOM05D005183 ORTHO05D006684 3.5e-87 325.9 314 53.8
Ca_28565_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 7.3e-85 318.2 223 69.1
AagrBONN_evm.TU.Sc2ySwM_344.5577 Anthoceros agrestis HOM05D005183 ORTHO05D006684 2.4e-83 313.2 307 53.1
Nitab4.5_0000132g0170 Nicotiana tabacum HOM05D005183 ORTHO05D006684 6.9e-83 311.6 228 67.1
Pp3c26_6490 Physcomitrium patens HOM05D005183 ORTHO05D006684 3.4e-82 309.3 310 53.5
Haze_19538 Corylus avellana HOM05D005183 ORTHO05D006684 8.1e-76 288.1 276 54.0
CBR_g32692 Chara braunii HOM05D012618 ORTHO05D006684 8.4e-73 278.1 293 52.6
Cre03.g197000 Chlamydomonas reinhardtii HOM05D005183 ORTHO05D006684 4.6e-71 272.3 304 47.7
MCO10G188 Micromonas commoda HOM05D005183 ORTHO05D006684 6.7e-62 241.9 295 45.4
Oeu037537.3 Olea europaea HOM05D005183 ORTHO05D006684 4.1e-59 232.6 214 55.1
PRCOL_00004600 Prasinoderma coloniale HOM05D005183 ORTHO05D006684 7.9e-47 191.8 300 39.7
HanXRQChr08g0223931 Helianthus annuus HOM05D005183 ORTHO05D006684 6.9e-43 178.7 174 57.5
Ca_11626_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 6.7e-38 162.2 104 74.0
Lalb_Chr02g0155171 Lupinus albus HOM05D005183 ORTHO05D006684 3.6e-31 139.8 93 72.0
Os05g0506900 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 4.0e-30 136.3 94 70.2
C04p39730 Brassica napus HOM05D005183 ORTHO05D026969 9.1e-27 125.2 90 75.6
BolC4t25545H Brassica oleracea HOM05D005183 ORTHO05D026969 9.1e-27 125.2 90 75.6
MSTRG.19230 Avicennia marina HOM05D005183 ORTHO05D026969 1.7e-25 120.9 90 66.7
MELO3C028534.2 Cucumis melo HOM05D005183 ORTHO05D006684 4.0e-22 109.8 79 68.4
BolC6t35803H Brassica oleracea HOM05D005183 ORTHO05D026969 2.8e-20 103.6 90 64.4
TAR371G0095 Trochodendron aralioides HOM05D005183 ORTHO05D045124 1.6e-15 87.8 116 45.7
C06p07140 Brassica napus HOM05D005183 ORTHO05D100002 3.6e-07 60.1 33 90.9
Dinv21257 Davidia involucrata HOM05D005183 ORTHO05D045124 6.8e-06 55.8 99 40.4


User provided reference genes

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