Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 4.8e-59 231.1 130 100.0
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 3.1e-58 228.4 130 98.5
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 7.0e-58 227.3 130 97.7
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 2.7e-57 225.3 130 96.9
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 7.7e-57 223.8 129 96.9
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 1.0e-56 223.4 130 96.2
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 1.3e-56 223.0 130 96.9
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 6.6e-56 220.7 130 96.2
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 3.3e-55 218.4 131 95.4
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 3.3e-55 218.4 130 93.1
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 4.7e-54 214.5 130 95.4
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 8.0e-54 213.8 129 95.3
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 2.3e-53 212.2 122 97.5
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 4.4e-52 208.0 165 76.4
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 1.3e-51 206.5 122 94.3
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 4.1e-50 201.4 130 89.2
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 7.0e-50 200.7 121 94.2
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 7.0e-50 200.7 132 89.4
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 2.0e-49 199.1 130 85.4
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 4.5e-49 198.0 129 86.0
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 5.9e-49 197.6 129 87.6
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 7.8e-49 197.2 129 86.8
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 7.8e-49 197.2 129 86.8
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 1.7e-48 196.1 129 85.3
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 2.9e-48 195.3 132 87.1
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 5.0e-48 194.5 129 86.0
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 1.1e-47 193.4 128 85.2
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 1.9e-47 192.6 130 84.6
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 2.5e-47 192.2 129 84.5
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 3.3e-47 191.8 129 84.5
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 3.3e-47 191.8 133 84.2
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 4.3e-47 191.4 132 83.3
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 4.3e-47 191.4 132 84.8
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 7.3e-47 190.7 133 83.5
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 9.5e-47 190.3 129 83.7
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 9.5e-47 190.3 129 83.7
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 1.6e-46 189.5 132 83.3
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 1.6e-46 189.5 128 83.6
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 2.8e-46 188.7 129 83.7
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 3.6e-46 188.3 132 82.6
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 4.7e-46 188.0 132 81.8
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 8.0e-46 187.2 132 81.8
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.0e-45 186.8 132 81.1
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 1.4e-45 186.4 132 81.8
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 3.1e-45 185.3 132 82.6
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 4.0e-45 184.9 128 82.8
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 4.0e-45 184.9 132 81.8
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 5.2e-45 184.5 129 82.2
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 8.9e-45 183.7 132 81.8
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 1.2e-44 183.3 132 81.1
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 2.0e-44 182.6 132 81.1
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 2.0e-44 182.6 132 81.1
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 3.4e-44 181.8 132 80.3
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 3.4e-44 181.8 132 81.1
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 3.4e-44 181.8 132 81.1
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 7.5e-44 180.6 131 82.4
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 9.8e-44 180.3 132 79.5
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 9.8e-44 180.3 132 81.1
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 1.7e-43 179.5 132 79.5
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 1.7e-43 179.5 132 79.5
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 2.9e-43 178.7 131 82.4
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 4.9e-43 177.9 129 79.8
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 1.1e-42 176.8 120 84.2
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 5.4e-42 174.5 117 85.5
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 5.4e-42 174.5 132 78.0
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 7.0e-42 174.1 132 76.5
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 1.6e-41 172.9 132 78.0
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 1.6e-41 172.9 153 70.6
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 3.5e-41 171.8 116 85.3
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 3.5e-41 171.8 130 78.5
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 3.5e-41 171.8 129 74.4
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 4.6e-41 171.4 129 75.2
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 7.8e-41 170.6 128 75.0
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 1.7e-40 169.5 132 78.0
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 1.7e-40 169.5 119 83.2
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 3.9e-40 168.3 129 72.9
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 5.0e-40 167.9 130 77.7
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 6.6e-40 167.5 133 78.2
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 1.1e-39 166.8 119 81.5
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.5e-39 166.4 119 80.7
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 4.3e-39 164.9 162 64.2
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 5.6e-39 164.5 119 82.4
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 9.5e-39 163.7 129 76.7
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 1.2e-38 163.3 119 80.7
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 2.1e-38 162.5 119 79.8
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 2.8e-38 162.2 132 75.8
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 4.7e-38 161.4 129 74.4
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 8.0e-38 160.6 132 75.0
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 1.4e-37 159.8 119 79.8
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 5.2e-37 157.9 119 78.2
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 5.2e-37 157.9 132 73.5
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 8.9e-37 157.1 103 85.4
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 1.2e-36 156.8 129 74.4
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 1.2e-36 156.8 129 74.4
Aa31LG6G5780 Aethionema arabicum HOM05D005404 ORTHO05D006623 5.8e-36 154.5 95 88.4
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 7.5e-36 154.1 128 70.3
C07p15720 Brassica napus HOM05D005404 ORTHO05D006623 9.8e-36 153.7 86 98.8
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 2.2e-35 152.5 132 72.0
ECA248G0679 Erigeron canadensis HOM05D005404 ORTHO05D006623 2.9e-35 152.1 129 73.6
FAN25G0636 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.9e-35 152.1 131 72.5
FAN25G2540 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.9e-35 152.1 131 72.5
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 6.4e-35 151.0 155 63.9
Dinv32291 Davidia involucrata HOM05D005404 ORTHO05D006623 1.9e-34 149.4 119 76.5
Oeu012458.1 Olea europaea HOM05D005404 ORTHO05D006623 1.6e-33 146.4 128 69.5
TWI09G1218 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 1.3e-32 143.3 115 77.4
FAN16G2304 Fragaria x ananassa HOM05D005404 ORTHO05D006623 3.9e-32 141.7 132 68.9
AUR62027578 Chenopodium quinoa HOM05D005404 ORTHO05D006623 5.1e-32 141.4 129 68.2
Lj2A310T44 Lonicera japonica HOM05D005404 ORTHO05D006623 8.6e-32 140.6 119 73.9
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 9.5e-31 137.1 131 68.7
AUR62035781 Chenopodium quinoa HOM05D005404 ORTHO05D006623 2.1e-30 136.0 129 65.9
CAN.G257.34 Capsicum annuum HOM05D005404 ORTHO05D006623 3.6e-30 135.2 131 65.6
FvH4_3g06230 Fragaria vesca HOM05D005404 ORTHO05D006623 5.2e-29 131.3 119 69.7
MSTRG.14760 Avicennia marina HOM05D005404 ORTHO05D006623 2.0e-28 129.4 104 71.2
PGSC0003DMG400003081 Solanum tuberosum HOM05D005404 ORTHO05D006623 4.4e-28 128.3 132 65.2
Oeu052389.2 Olea europaea HOM05D005404 ORTHO05D006623 7.5e-28 127.5 141 58.2
AUR62023445 Chenopodium quinoa HOM05D005404 ORTHO05D006623 9.9e-28 127.1 93 76.3
Zm00001eb342640 Zea mays HOM05D005404 ORTHO05D006623 9.9e-28 127.1 129 64.3
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 6.4e-27 124.4 82 85.4
Oeu046548.1 Olea europaea HOM05D005404 ORTHO05D006623 1.1e-26 123.6 116 65.5
Peaxi162Scf00121g02445 Petunia axillaris HOM05D005404 ORTHO05D006623 1.2e-25 120.2 117 64.1
Pp3c14_19320 Physcomitrium patens HOM05D005404 ORTHO05D006623 3.5e-25 118.6 131 60.3
MD09G1183100 Malus domestica HOM05D005404 ORTHO05D006623 7.8e-25 117.5 82 82.9
AagrBONN_evm.TU.Sc2ySwM_362.2923 Anthoceros agrestis HOM05D005404 ORTHO05D006623 3.0e-24 115.5 79 77.2
A09p36640 Brassica napus HOM05D005404 ORTHO05D006623 5.1e-24 114.8 64 98.4
ClCG01G024320 Citrullus lanatus HOM05D005404 ORTHO05D006623 1.6e-22 109.8 82 75.6
SMO358G0232 Selaginella moellendorffii HOM05D005404 ORTHO05D006623 1.6e-22 109.8 127 56.7
arahy.Tifrunner.gnm1.ann1.JSLQ1D Arachis hypogaea HOM05D005404 ORTHO05D006623 2.0e-20 102.8 68 83.8
Cpa.g.sc17.100 Carica papaya HOM05D005404 ORTHO05D006623 2.6e-20 102.4 63 87.3
Mapoly0080s0013 Marchantia polymorpha HOM05D005404 ORTHO05D006623 2.6e-20 102.4 133 54.9
Os05g0546500 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 3.8e-19 98.6 67 80.6
CBR_g45965 Chara braunii HOM05D005404 ORTHO05D006623 3.2e-18 95.5 83 63.9
Cre12.g557800 Chlamydomonas reinhardtii HOM05D005404 ORTHO05D006623 5.4e-18 94.7 114 50.9
SEGI_04398 Sequoiadendron giganteum HOM05D005404 ORTHO05D006623 9.2e-18 94.0 65 78.5
C03p76250 Brassica napus HOM05D005404 ORTHO05D006623 1.6e-17 93.2 54 96.3
Nitab4.5_0003527g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 1.7e-16 89.7 58 82.8
arahy.Tifrunner.gnm1.ann1.HCY9BB Arachis hypogaea HOM05D005404 ORTHO05D006623 3.9e-16 88.6 63 79.4
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 6.6e-16 87.8 273 34.4
PRCOL_00005423 Prasinoderma coloniale HOM05D005404 ORTHO05D006623 6.2e-14 81.3 84 51.2
HPP92_021556 Vanilla planifolia HOM05D000864 ORTHO05D001658 6.2e-14 81.3 64 71.9
HPP92_021557 Vanilla planifolia HOM05D005404 ORTHO05D006623 9.9e-12 73.9 51 78.4
CSS0048314 Camellia sinensis var. sinensis HOM05D005404 ORTHO05D006623 7.1e-10 67.8 75 61.3
Gohir.A08G088100 Gossypium hirsutum HOM05D005404 ORTHO05D006623 7.1e-10 67.8 51 78.4
Nn4g23354 Nelumbo nucifera HOM05D005404 ORTHO05D006623 3.6e-06 55.5 40 77.5


User provided reference genes

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