Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35209 Brassica carinata HOM05D012888 ORTHO05D014832 1.5e-55 219.2 105 100.0
C07p18640 Brassica napus HOM05D012888 ORTHO05D014832 7.6e-55 216.9 105 99.0
BolC7t42375H Brassica oleracea HOM05D012888 ORTHO05D014832 7.6e-55 216.9 105 99.0
BcaC02g08573 Brassica carinata HOM05D012888 ORTHO05D014832 6.3e-49 197.2 106 93.4
BcaNung02095 Brassica carinata HOM05D002393 ORTHO05D024369 2.0e-39 165.6 85 94.1
BcaB03g15241 Brassica carinata HOM05D012888 ORTHO05D014832 3.6e-36 154.8 102 76.5
C07p40290 Brassica napus HOM05D000055 ORTHO05D000057 1.0e-30 136.7 99 73.7
BcaB05g23151 Brassica carinata HOM05D012888 ORTHO05D014832 1.5e-21 106.3 94 61.7
C06p25100 Brassica napus HOM05D000020 ORTHO05D000156 6.1e-20 100.9 58 84.5
BolC6t37669H Brassica oleracea HOM05D000020 ORTHO05D000156 6.1e-20 100.9 58 84.5
BraA07t30040Z Brassica rapa HOM05D000020 ORTHO05D000156 6.1e-20 100.9 58 84.5
BcaC08g44895 Brassica carinata HOM05D000020 ORTHO05D000156 8.0e-20 100.5 58 84.5
Sp5g04620 Schrenkiella parvula HOM05D000020 ORTHO05D000156 1.4e-19 99.8 58 82.8
CARHR168450 Cardamine hirsuta HOM05D000020 ORTHO05D000156 1.2e-18 96.7 78 62.8
Thhalv10006265m.g Eutrema salsugineum HOM05D000020 ORTHO05D000156 1.5e-18 96.3 58 79.3
Carub.0005s2495 Capsella rubella HOM05D000020 ORTHO05D000156 7.5e-18 94.0 77 64.9
C04p57910 Brassica napus HOM05D012888 ORTHO05D014832 3.1e-16 88.6 42 97.6
AL5G39790 Arabidopsis lyrata HOM05D000020 ORTHO05D000156 5.4e-16 87.8 58 72.4
AT3G58100 Arabidopsis thaliana HOM05D000020 ORTHO05D000156 7.0e-16 87.4 58 70.7
Carub.0004s2476 Capsella rubella HOM05D000020 ORTHO05D000156 2.7e-15 85.5 53 73.6
Aa31LG1G24240 Aethionema arabicum HOM05D000020 ORTHO05D000156 1.0e-14 83.6 53 73.6
BcaC02g12483 Brassica carinata HOM05D000020 ORTHO05D000156 3.8e-14 81.6 52 73.1
BcaB02g07552 Brassica carinata HOM05D000122 ORTHO05D000139 5.0e-14 81.3 75 56.0
BraA05t19282Z Brassica rapa HOM05D000020 ORTHO05D000156 1.5e-13 79.7 52 71.2
BolC4t21989H Brassica oleracea HOM05D000020 ORTHO05D000156 2.5e-13 79.0 52 71.2
BcaNung04386 Brassica carinata HOM05D000020 ORTHO05D000156 1.6e-12 76.3 52 69.2
THA.LOC104822816 Tarenaya hassleriana HOM05D000020 ORTHO05D000156 2.7e-12 75.5 52 67.3
AL4G40780 Arabidopsis lyrata HOM05D012888 ORTHO05D014832 8.0e-12 73.9 42 78.6
C08p33630 Brassica napus HOM05D012888 ORTHO05D014832 1.4e-11 73.2 63 66.7
A09p50890 Brassica napus HOM05D012888 ORTHO05D014832 1.8e-11 72.8 59 69.5
BraA09t40535Z Brassica rapa HOM05D012888 ORTHO05D014832 1.8e-11 72.8 59 69.5
Medtr4g079530 Medicago truncatula HOM05D000020 ORTHO05D000156 3.0e-11 72.0 89 41.6
AL6G18050 Arabidopsis lyrata HOM05D012888 ORTHO05D014832 3.4e-10 68.6 40 77.5
BolC8t50960H Brassica oleracea HOM05D012888 ORTHO05D014832 3.4e-10 68.6 63 63.5
Cpa.g.sc209.11 Carica papaya HOM05D000020 ORTHO05D000156 3.4e-10 68.6 83 43.4
Lj3g0016788 Lotus japonicus HOM05D000020 ORTHO05D000156 3.4e-10 68.6 89 39.3
A05p02910 Brassica napus HOM05D000020 ORTHO05D000156 5.7e-10 67.8 67 55.2
Ciclev10016863m.g Citrus clementina HOM05D000020 ORTHO05D000156 7.5e-10 67.4 49 59.2
Thecc.01G242100 Theobroma cacao HOM05D000020 ORTHO05D000156 7.5e-10 67.4 50 60.0
Duzib187G1264 Durio zibethinus HOM05D000020 ORTHO05D000156 9.8e-10 67.0 50 60.0
Gohir.A10G153700 Gossypium hirsutum HOM05D000020 ORTHO05D000156 9.8e-10 67.0 50 58.0
Gohir.D10G112400 Gossypium hirsutum HOM05D000020 ORTHO05D000156 9.8e-10 67.0 50 58.0
Gorai.011G124300 Gossypium raimondii HOM05D000020 ORTHO05D000156 9.8e-10 67.0 50 58.0
CANSAT64G1897 Cannabis sativa HOM05D000020 ORTHO05D000156 1.3e-09 66.6 49 61.2
VMungo1127G0428 Vigna mungo HOM05D000020 ORTHO05D000156 1.3e-09 66.6 91 36.3
TPR.G14946 Trifolium pratense HOM05D000020 ORTHO05D000156 2.2e-09 65.9 89 39.3
Phvul.011G117000 Phaseolus vulgaris HOM05D000020 ORTHO05D000156 2.8e-09 65.5 91 36.3
TWI59G0339 Tripterygium wilfordii HOM05D000020 ORTHO05D000156 3.7e-09 65.1 52 55.8
Rhsim04G0072900 Rhododendron simsii HOM05D000020 ORTHO05D000156 8.3e-09 63.9 57 50.9
arahy.Tifrunner.gnm1.ann1.E9700R Arachis hypogaea HOM05D000020 ORTHO05D000156 1.1e-08 63.5 51 56.9
C04p03540 Brassica napus HOM05D000020 ORTHO05D000156 1.1e-08 63.5 59 59.3
GSVIVG01020664001 Vitis vinifera HOM05D000020 ORTHO05D000156 1.1e-08 63.5 51 56.9
Atru.chr6.2834 Acer truncatum HOM05D000020 ORTHO05D000156 1.4e-08 63.2 48 56.2
Sabra19G0104800 Salix brachista HOM05D000020 ORTHO05D000156 1.4e-08 63.2 50 58.0
SalBow7G0536 Salvia bowleyana HOM05D000020 ORTHO05D000156 2.4e-08 62.4 50 52.0
Ca_18899_v3 Cicer arietinum L. HOM05D000020 ORTHO05D000156 3.1e-08 62.0 48 54.2
Psat7g166520 Pisum sativum HOM05D000020 ORTHO05D000156 3.1e-08 62.0 90 36.7
Eucgr.K01086 Eucalyptus grandis HOM05D000020 ORTHO05D000156 4.1e-08 61.6 69 44.9
arahy.Tifrunner.gnm1.ann1.AZG461 Arachis hypogaea HOM05D000020 ORTHO05D000156 7.0e-08 60.8 51 54.9
Glyma.06G284700 Glycine max HOM05D000020 ORTHO05D000156 7.0e-08 60.8 89 37.1
Manes.12G088176 Manihot esculenta HOM05D000020 ORTHO05D000156 7.0e-08 60.8 47 59.6
Potri.019G091500 Populus trichocarpa HOM05D000020 ORTHO05D000156 7.0e-08 60.8 50 56.0
Sabra13G0100900 Salix brachista HOM05D000020 ORTHO05D000156 7.0e-08 60.8 50 56.0
Glyma.12G121200 Glycine max HOM05D000020 ORTHO05D000156 9.2e-08 60.5 78 37.2
PGR142G2300 Punica granatum HOM05D000020 ORTHO05D000156 9.2e-08 60.5 49 55.1
Rhsim06G0133900 Rhododendron simsii HOM05D000020 ORTHO05D000156 9.2e-08 60.5 49 55.1
SalBow7G4404 Salvia bowleyana HOM05D000020 ORTHO05D000156 9.2e-08 60.5 50 50.0
CSS0018547 Camellia sinensis var. sinensis HOM05D000020 ORTHO05D000156 1.2e-07 60.1 61 47.5
CiPaw.04G130700 Carya illinoinensis HOM05D000020 ORTHO05D000156 1.2e-07 60.1 50 54.0
Haze_13318 Corylus avellana HOM05D000020 ORTHO05D000156 1.2e-07 60.1 76 40.8
Manes.13G138200 Manihot esculenta HOM05D000020 ORTHO05D000156 1.6e-07 59.7 50 56.0
Actinidia10982 Actinidia chinensis HOM05D000020 ORTHO05D000156 2.0e-07 59.3 48 54.2
Actinidia11126 Actinidia chinensis HOM05D000020 ORTHO05D000156 2.7e-07 58.9 48 54.2
Dinv02388 Davidia involucrata HOM05D000020 ORTHO05D000156 2.7e-07 58.9 48 52.1
vmacro09232 Vaccinium macrocarpon HOM05D000020 ORTHO05D000156 3.5e-07 58.5 48 52.1
Hma1.2p1_0002F.1_g002550 Hydrangea macrophylla HOM05D000020 ORTHO05D000156 5.9e-07 57.8 57 49.1
Cc05_g08040 Coffea canephora HOM05D000020 ORTHO05D000156 7.7e-07 57.4 60 45.0
CiPaw.03G184700 Carya illinoinensis HOM05D000020 ORTHO05D000156 1.0e-06 57.0 48 52.1
FvH4_6g27020 Fragaria vesca HOM05D000020 ORTHO05D000156 1.0e-06 57.0 47 55.3
FAN02G0456 Fragaria x ananassa HOM05D000020 ORTHO05D000156 1.0e-06 57.0 47 55.3
FAN05G5664 Fragaria x ananassa HOM05D000020 ORTHO05D000156 1.0e-06 57.0 47 55.3
MD17G1233700 Malus domestica HOM05D000020 ORTHO05D000156 1.0e-06 57.0 50 48.0
Nitab4.5_0002629g0090 Nicotiana tabacum HOM05D000020 ORTHO05D000156 1.0e-06 57.0 57 47.4
Nitab4.5_0009096g0020 Nicotiana tabacum HOM05D000020 ORTHO05D000156 1.0e-06 57.0 57 47.4
RhsimUnG0244700 Rhododendron simsii HOM05D000020 ORTHO05D000156 1.0e-06 57.0 49 51.0
MSTRG.15112 Avicennia marina HOM05D000020 ORTHO05D000156 1.3e-06 56.6 60 50.0
Lalb_Chr01g0005931 Lupinus albus HOM05D000020 ORTHO05D000156 2.3e-06 55.8 96 34.4
Sed0009624 Sechium edule HOM05D000020 ORTHO05D000156 2.3e-06 55.8 43 55.8
SGA_v2.0_scaffold27G11583 Striga asiatica HOM05D000020 ORTHO05D000156 2.3e-06 55.8 48 54.2
TAR714G0001 Trochodendron aralioides HOM05D000020 ORTHO05D000156 2.3e-06 55.8 48 52.1
VMungo1080G1620 Vigna mungo HOM05D000020 ORTHO05D000156 2.3e-06 55.8 48 50.0
Phvul.005G097600 Phaseolus vulgaris HOM05D000020 ORTHO05D000156 2.9e-06 55.5 61 44.3
RcHm_v2.0_Chr2g0128881 Rosa chinensis HOM05D000020 ORTHO05D000156 2.9e-06 55.5 47 51.1
Glyma.13G292700 Glycine max HOM05D000020 ORTHO05D000156 3.8e-06 55.1 61 44.3
Nitab4.5_0005186g0010 Nicotiana tabacum HOM05D000020 ORTHO05D000156 5.0e-06 54.7 61 44.3
Prupe.3G125100 Prunus persica HOM05D000020 ORTHO05D000156 5.0e-06 54.7 47 51.1
AUR62024068 Chenopodium quinoa HOM05D000020 ORTHO05D000156 6.6e-06 54.3 43 53.5
AUR62043438 Chenopodium quinoa HOM05D000020 ORTHO05D000156 6.6e-06 54.3 43 53.5
Glyma.12G208500 Glycine max HOM05D000020 ORTHO05D000156 6.6e-06 54.3 80 36.2
ClCG09G011290 Citrullus lanatus HOM05D000020 ORTHO05D000156 8.6e-06 53.9 77 35.1


User provided reference genes

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