Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35004 Brassica carinata HOM05D004161 ORTHO05D005770 7.5e-189 663.7 333 100.0
A07p14130 Brassica napus HOM05D004161 ORTHO05D005770 1.1e-150 537.0 365 79.2
BraA07t29171Z Brassica rapa HOM05D004161 ORTHO05D005770 2.9e-148 528.9 365 77.8
C07p20800 Brassica napus HOM05D004161 ORTHO05D005770 6.4e-140 501.1 365 74.8
BcaC05g26198 Brassica carinata HOM05D004161 ORTHO05D005770 1.5e-136 490.0 365 73.4
A09p41820 Brassica napus HOM05D004161 ORTHO05D005770 1.5e-136 490.0 365 73.4
C05p22060 Brassica napus HOM05D004161 ORTHO05D005770 1.5e-136 490.0 365 73.4
BolC5t30902H Brassica oleracea HOM05D004161 ORTHO05D005770 1.5e-136 490.0 365 73.4
BraA09t39671Z Brassica rapa HOM05D004161 ORTHO05D005770 1.5e-136 490.0 365 73.4
BcaB07g32287 Brassica carinata HOM05D004161 ORTHO05D005770 2.1e-135 486.1 365 72.9
Sp1g20380 Schrenkiella parvula HOM05D004161 ORTHO05D005770 2.8e-135 485.7 363 73.3
Thhalv10008042m.g Eutrema salsugineum HOM05D004161 ORTHO05D005770 1.7e-132 476.5 365 72.1
AL1G36480 Arabidopsis lyrata HOM05D004161 ORTHO05D005770 2.2e-132 476.1 363 71.3
Carub.0001s2242 Capsella rubella HOM05D004161 ORTHO05D005770 1.8e-129 466.5 363 70.5
AT1G22920 Arabidopsis thaliana HOM05D004161 ORTHO05D005770 5.1e-129 464.9 363 69.7
CARHR023300 Cardamine hirsuta HOM05D004161 ORTHO05D005770 5.1e-129 464.9 362 70.7
BcaB03g14179 Brassica carinata HOM05D004161 ORTHO05D005770 2.1e-127 459.5 365 71.0
Aa31LG4G9280 Aethionema arabicum HOM05D004161 ORTHO05D005770 3.2e-123 445.7 365 67.7
THA.LOC104821862 Tarenaya hassleriana HOM05D004161 ORTHO05D005770 1.3e-119 433.7 365 65.2
AT1G71230 Arabidopsis thaliana HOM05D004161 ORTHO05D005770 1.6e-119 433.3 363 67.5
AL2G30840 Arabidopsis lyrata HOM05D004161 ORTHO05D005770 5.3e-118 428.3 364 66.5
Carub.0002s1811 Capsella rubella HOM05D004161 ORTHO05D005770 2.6e-117 426.0 363 66.7
Thhalv10018788m.g Eutrema salsugineum HOM05D004161 ORTHO05D005770 7.7e-117 424.5 364 65.4
Medtr3g108790 Medicago truncatula HOM05D004161 ORTHO05D005770 7.7e-117 424.5 363 64.5
Gohir.D05G067400 Gossypium hirsutum HOM05D004161 ORTHO05D005770 1.0e-116 424.1 361 65.7
Gorai.009G068200 Gossypium raimondii HOM05D004161 ORTHO05D005770 1.0e-116 424.1 361 65.7
HanXRQChr17g0533271 Helianthus annuus HOM05D004161 ORTHO05D005770 1.7e-116 423.3 363 64.7
Gohir.A05G064800 Gossypium hirsutum HOM05D004161 ORTHO05D005770 2.2e-116 422.9 361 65.4
CARHR064530 Cardamine hirsuta HOM05D004161 ORTHO05D005770 2.9e-116 422.5 366 64.8
ECA246G1306 Erigeron canadensis HOM05D004161 ORTHO05D005770 2.9e-116 422.5 363 64.2
Haze_21728 Corylus avellana HOM05D004161 ORTHO05D005770 5.0e-116 421.8 362 65.5
Duzib168G1137 Durio zibethinus HOM05D004161 ORTHO05D005770 6.5e-116 421.4 361 65.1
Lsat_1_v5_gn_3_9100 Lactuca sativa HOM05D004161 ORTHO05D005770 6.5e-116 421.4 363 63.9
PGR142G1061 Punica granatum HOM05D004161 ORTHO05D005770 6.5e-116 421.4 373 63.3
TPR.G12320 Trifolium pratense HOM05D004161 ORTHO05D005770 6.5e-116 421.4 363 64.5
Lalb_Chr23g0269071 Lupinus albus HOM05D004161 ORTHO05D005770 8.5e-116 421.0 365 63.3
CAN.G65.161 Capsicum annuum HOM05D004161 ORTHO05D005770 1.1e-115 420.6 368 64.4
Hma1.2p1_0432F.1_g151800 Hydrangea macrophylla HOM05D004161 ORTHO05D005770 1.1e-115 420.6 363 63.9
COL.COLO4_19041 Corchorus olitorius HOM05D004161 ORTHO05D005770 1.4e-115 420.2 361 65.1
PGSC0003DMG400009240 Solanum tuberosum HOM05D004161 ORTHO05D005770 1.9e-115 419.9 368 63.6
Cpa.g.sc23.7 Carica papaya HOM05D004161 ORTHO05D005770 2.5e-115 419.5 363 64.2
MELO3C011193.2 Cucumis melo HOM05D004161 ORTHO05D005770 3.2e-115 419.1 369 64.0
Nitab4.5_0001586g0240 Nicotiana tabacum HOM05D004161 ORTHO05D005770 3.2e-115 419.1 368 63.9
CANSAT25G1154 Cannabis sativa HOM05D004161 ORTHO05D005770 4.2e-115 418.7 367 64.0
Actinidia34376 Actinidia chinensis HOM05D004161 ORTHO05D005770 7.2e-115 417.9 363 63.9
Psat5g024160 Pisum sativum HOM05D004161 ORTHO05D005770 9.4e-115 417.5 363 63.6
Sopen11g009190 Solanum pennellii HOM05D004161 ORTHO05D005770 9.4e-115 417.5 368 63.3
CsaV3_2G031440 Cucumis sativus L. HOM05D004161 ORTHO05D005770 1.2e-114 417.2 369 63.7
Solyc11g017300.2 Solanum lycopersicum HOM05D004161 ORTHO05D005770 1.2e-114 417.2 368 63.3
Atru.chr7.2634 Acer truncatum HOM05D004161 ORTHO05D005770 2.7e-114 416.0 371 62.8
Ca_15670_v3 Cicer arietinum L. HOM05D004161 ORTHO05D005770 2.7e-114 416.0 364 64.3
Lj7C749T8 Lonicera japonica HOM05D004161 ORTHO05D005770 2.7e-114 416.0 363 63.1
Cfa013264 Carpinus fangiana HOM05D004161 ORTHO05D005770 3.6e-114 415.6 362 64.6
Sopen06g029500 Solanum pennellii HOM05D004161 ORTHO05D005770 3.6e-114 415.6 368 63.0
TWI34G1526 Tripterygium wilfordii HOM05D004161 ORTHO05D005770 3.6e-114 415.6 373 63.5
unitig_0.g2820 Utricularia gibba HOM05D004161 ORTHO05D005770 3.6e-114 415.6 369 62.6
Lj1g0012076 Lotus japonicus HOM05D004161 ORTHO05D005770 4.6e-114 415.2 364 64.0
PGSC0003DMG400026918 Solanum tuberosum HOM05D004161 ORTHO05D005770 4.6e-114 415.2 368 63.0
TWI32G1088 Tripterygium wilfordii HOM05D004161 ORTHO05D005770 4.6e-114 415.2 373 63.5
unitig_747.g21902 Utricularia gibba HOM05D004161 ORTHO05D005770 6.1e-114 414.8 364 63.5
CSS0014609 Camellia sinensis var. sinensis HOM05D004161 ORTHO05D005770 1.0e-113 414.1 363 63.4
Peaxi162Scf00180g00518 Petunia axillaris HOM05D004161 ORTHO05D005770 1.0e-113 414.1 367 63.2
Dinv10170 Davidia involucrata HOM05D004161 ORTHO05D005770 1.4e-113 413.7 346 65.6
Potri.018G006100 Populus trichocarpa HOM05D004161 ORTHO05D005770 1.4e-113 413.7 370 62.7
Sed0017284 Sechium edule HOM05D004161 ORTHO05D005770 1.4e-113 413.7 369 63.7
Lalb_Chr08g0243601 Lupinus albus HOM05D004161 ORTHO05D005770 1.8e-113 413.3 365 62.5
Nitab4.5_0002553g0070 Nicotiana tabacum HOM05D004161 ORTHO05D005770 1.8e-113 413.3 368 63.3
MSTRG.13941 Avicennia marina HOM05D004161 ORTHO05D005770 2.3e-113 412.9 365 63.0
Solyc06g073150.3 Solanum lycopersicum HOM05D004161 ORTHO05D005770 3.0e-113 412.5 368 62.8
Ciclev10008736m.g Citrus clementina HOM05D004161 ORTHO05D005770 3.9e-113 412.1 367 63.5
Duzib187G0390 Durio zibethinus HOM05D004161 ORTHO05D005770 3.9e-113 412.1 361 64.3
Sed0011095 Sechium edule HOM05D004161 ORTHO05D005770 3.9e-113 412.1 369 63.4
QL12p025061 Quercus lobata HOM05D004161 ORTHO05D005770 6.7e-113 411.4 376 62.5
Phvul.009G100700 Phaseolus vulgaris HOM05D004161 ORTHO05D005770 1.1e-112 410.6 375 61.6
Thecc.09G006500 Theobroma cacao HOM05D004161 ORTHO05D005770 1.1e-112 410.6 361 63.7
Manes.03G003400 Manihot esculenta HOM05D004161 ORTHO05D005770 1.5e-112 410.2 370 63.2
FvH4_2g36890 Fragaria vesca HOM05D004161 ORTHO05D005770 2.0e-112 409.8 364 62.6
FAN27G0727 Fragaria x ananassa HOM05D004161 ORTHO05D005770 2.0e-112 409.8 364 62.6
SalBow8G4837 Salvia bowleyana HOM05D004161 ORTHO05D005770 2.0e-112 409.8 367 63.8
vmacro01979 Vaccinium macrocarpon HOM05D004161 ORTHO05D005770 2.5e-112 409.5 363 62.5
Manes.16G136100 Manihot esculenta HOM05D004161 ORTHO05D005770 5.7e-112 408.3 370 62.2
VMungo1309G2307 Vigna mungo HOM05D004161 ORTHO05D005770 9.7e-112 407.5 375 60.8
DCAR_027524 Daucus carota HOM05D004161 ORTHO05D005770 1.7e-111 406.8 363 62.8
FAN15G1150 Fragaria x ananassa HOM05D004161 ORTHO05D005770 1.7e-111 406.8 364 62.6
Prupe.1G460800 Prunus persica HOM05D004161 ORTHO05D005770 1.7e-111 406.8 371 63.1
Migut.E01406 Erythranthe guttata HOM05D004161 ORTHO05D005770 2.8e-111 406.0 367 62.1
FAN20G0045 Fragaria x ananassa HOM05D004161 ORTHO05D005770 2.8e-111 406.0 364 62.6
CiPaw.07G213300 Carya illinoinensis HOM05D004161 ORTHO05D005770 3.7e-111 405.6 362 63.3
Sabra18G0014200 Salix brachista HOM05D004161 ORTHO05D005770 4.8e-111 405.2 403 58.6
Eucgr.C02093 Eucalyptus grandis HOM05D004161 ORTHO05D005770 6.3e-111 404.8 381 60.9
MD08G1130400 Malus domestica HOM05D004161 ORTHO05D005770 6.3e-111 404.8 372 62.1
Glyma.06G076000 Glycine max HOM05D004161 ORTHO05D005770 8.2e-111 404.4 376 60.6
Oeu019278.1 Olea europaea HOM05D004161 ORTHO05D005770 1.1e-110 404.1 365 62.5
Sp5g26420 Schrenkiella parvula HOM05D004161 ORTHO05D005770 1.1e-110 404.1 348 66.4
SGA_v2.0_scaffold121G33036 Striga asiatica HOM05D004161 ORTHO05D005770 1.4e-110 403.7 371 61.2
Potri.006G275100 Populus trichocarpa HOM05D004161 ORTHO05D005770 1.8e-110 403.3 371 61.2
RcHm_v2.0_Chr6g0304891 Rosa chinensis HOM05D004161 ORTHO05D005770 1.8e-110 403.3 368 61.7
Ah.11g043770 Amaranthus hybridus HOM05D004161 ORTHO05D005770 2.0e-109 399.8 371 60.1
Sabra06G0212900 Salix brachista HOM05D004161 ORTHO05D005770 2.0e-109 399.8 371 60.6
Glyma.04G075000 Glycine max HOM05D004161 ORTHO05D005770 2.6e-109 399.4 375 60.5
MD15G1108500 Malus domestica HOM05D004161 ORTHO05D005770 1.0e-108 397.5 372 61.6
HPP92_017054 Vanilla planifolia HOM05D004161 ORTHO05D005770 2.2e-108 396.4 365 61.9
SalBow4G1531 Salvia bowleyana HOM05D004161 ORTHO05D005770 3.8e-108 395.6 360 61.7
MBI16_g31792_MAGBIO Magnolia biondii HOM05D004161 ORTHO05D005770 1.9e-107 393.3 365 60.5
SGA_v2.0_scaffold169G38590 Striga asiatica HOM05D004161 ORTHO05D005770 1.9e-107 393.3 375 60.3
TAR626G0400 Trochodendron aralioides HOM05D004161 ORTHO05D005770 1.9e-107 393.3 356 61.5
EL10Ac2g03746 Beta vulgaris HOM05D004161 ORTHO05D005770 5.5e-107 391.7 379 58.8
ATR0580G326 Amborella trichopoda HOM05D004161 ORTHO05D005770 1.6e-106 390.2 367 60.2
Zm00001eb068020 Zea mays HOM05D004161 ORTHO05D005770 1.6e-106 390.2 367 59.4
Gohir.A06G106200 Gossypium hirsutum HOM05D004161 ORTHO05D005770 3.6e-106 389.0 344 62.8
CDE04G3237 Ceratophyllum demersum HOM05D004161 ORTHO05D005770 1.0e-105 387.5 365 60.3
Rhsim11G0155000 Rhododendron simsii HOM05D004161 ORTHO05D005770 2.3e-105 386.3 444 52.0
Gorai.010G123100 Gossypium raimondii HOM05D004161 ORTHO05D005770 5.1e-105 385.2 344 62.2
Pp3c21_1460 Physcomitrium patens HOM05D004161 ORTHO05D005770 6.7e-105 384.8 375 58.7
Os04g0654700 Oryza sativa ssp. japonica HOM05D004161 ORTHO05D005770 2.0e-104 383.3 366 59.3
PSO063G1389 Papaver somniferum HOM05D004161 ORTHO05D005770 2.0e-104 383.3 379 57.3
PSO170G5806 Papaver somniferum HOM05D004161 ORTHO05D005770 2.0e-104 383.3 379 57.3
AUR62020608 Chenopodium quinoa HOM05D004161 ORTHO05D005770 9.7e-104 380.9 387 56.6
ClCG08G012710 Citrullus lanatus HOM05D004161 ORTHO05D005770 2.8e-103 379.4 318 67.0
AUR62009062 Chenopodium quinoa HOM05D004161 ORTHO05D005770 6.3e-103 378.3 387 56.6
RhsimUnG0126200 Rhododendron simsii HOM05D004161 ORTHO05D005770 6.3e-103 378.3 466 50.4
AagrBONN_evm.TU.Sc2ySwM_117.740 Anthoceros agrestis HOM05D004161 ORTHO05D005770 1.4e-102 377.1 349 61.0
Aqoxy7G02966 Aquilegia oxysepala HOM05D004161 ORTHO05D005770 4.1e-102 375.6 368 58.7
CiPaw.08G019300 Carya illinoinensis HOM05D004161 ORTHO05D005770 5.3e-102 375.2 338 63.9
Mapoly0006s0112 Marchantia polymorpha HOM05D004161 ORTHO05D005770 7.0e-102 374.8 367 59.1
SMO367G0024 Selaginella moellendorffii HOM05D004161 ORTHO05D005770 7.0e-102 374.8 368 58.7
Pp3c18_17430 Physcomitrium patens HOM05D004161 ORTHO05D005770 5.9e-101 371.7 375 57.3
BolC7t42612H Brassica oleracea HOM05D004161 ORTHO05D005770 2.2e-100 369.8 226 85.8
Hund03286 Selenicereus undatus HOM05D004161 ORTHO05D005770 6.7e-97 358.2 338 61.2
arahy.Tifrunner.gnm1.ann1.T9YY8P Arachis hypogaea HOM05D004161 ORTHO05D005770 5.9e-93 345.1 305 60.7
Gohir.D06G108400 Gossypium hirsutum HOM05D004161 ORTHO05D005770 2.1e-90 336.7 344 56.7
Sc09g0010220 Simmondsia chinensis HOM05D004161 ORTHO05D005770 6.3e-87 325.1 282 63.1
GSVIVG01023827001 Vitis vinifera HOM05D004161 ORTHO05D005770 1.8e-86 323.6 269 66.5
Cc08_g06790 Coffea canephora HOM05D004161 ORTHO05D005770 2.7e-85 319.7 269 65.4
arahy.Tifrunner.gnm1.ann1.DD3LGG Arachis hypogaea HOM05D004161 ORTHO05D005770 6.5e-84 315.1 371 51.2
Nn2g12726 Nelumbo nucifera HOM05D004161 ORTHO05D005770 2.1e-82 310.1 276 61.6
CSS0034864 Camellia sinensis var. sinensis HOM05D004161 ORTHO05D005770 2.6e-80 303.1 331 54.1
Cre09.g399178 Chlamydomonas reinhardtii HOM05D004161 ORTHO05D005770 6.1e-74 282.0 357 46.2
PRCOL_00006125 Prasinoderma coloniale HOM05D004161 ORTHO05D005770 1.3e-71 274.2 351 46.4
Haze_26449 Corylus avellana HOM05D004161 ORTHO05D005770 4.7e-66 255.8 330 46.4
CDE03G0096 Ceratophyllum demersum HOM05D004161 ORTHO05D005770 5.2e-65 252.3 350 46.3
Oeu018399.2 Olea europaea HOM05D004161 ORTHO05D005770 3.7e-63 246.1 269 55.4
Cfa022118 Carpinus fangiana HOM05D004161 ORTHO05D005770 1.6e-50 204.1 309 42.1
SEGI_39146 Sequoiadendron giganteum HOM05D004161 ORTHO05D005770 5.8e-48 195.7 113 83.2
MCO01G347 Micromonas commoda HOM05D004161 ORTHO05D005770 7.6e-48 195.3 326 37.7
SEGI_19243 Sequoiadendron giganteum HOM05D004161 ORTHO05D005770 1.4e-30 137.9 117 60.7
SEGI_36627 Sequoiadendron giganteum HOM05D004161 ORTHO05D005770 8.4e-23 112.1 108 56.5
CBR_g45373 Chara braunii HOM05D004161 ORTHO05D005770 1.1e-19 101.7 63 76.2
Gorai.001G001700 Gossypium raimondii HOM05D004161 ORTHO05D005770 3.1e-17 93.6 157 42.7
C08p21690 Brassica napus HOM05D002566 ORTHO05D002897 2.0e-16 90.9 196 37.2
SEGI_07197 Sequoiadendron giganteum HOM05D004161 ORTHO05D005770 3.8e-15 86.7 92 53.3
Medtr8g006650 Medicago truncatula HOM05D004161 ORTHO05D031074 1.1e-14 85.1 60 71.7
Medtr8g006645 Medicago truncatula HOM05D007178 ORTHO05D009022 3.2e-14 83.6 56 75.0
Actinidia00392 Actinidia chinensis HOM05D004161 ORTHO05D015225 1.2e-13 81.6 89 56.2
HanXRQChr10g0292121 Helianthus annuus HOM05D004161 ORTHO05D031074 1.6e-13 81.3 88 55.7
SEGI_00993 Sequoiadendron giganteum HOM05D004161 ORTHO05D015225 9.0e-09 65.5 36 83.3
SEGI_07706 Sequoiadendron giganteum HOM05D004161 ORTHO05D015225 9.0e-09 65.5 36 83.3
SEGI_26497 Sequoiadendron giganteum HOM05D004161 ORTHO05D015225 9.0e-09 65.5 36 83.3
SEGI_27379 Sequoiadendron giganteum HOM05D004161 ORTHO05D015225 9.0e-09 65.5 36 83.3
SEGI_34575 Sequoiadendron giganteum HOM05D004161 ORTHO05D015225 9.0e-09 65.5 36 83.3
Glyma.11G157558 Glycine max HOM05D004161 ORTHO05D213254 2.0e-08 64.3 31 90.3
SEGI_18983 Sequoiadendron giganteum HOM05D004161 ORTHO05D015225 2.0e-08 64.3 36 80.6
SEGI_33752 Sequoiadendron giganteum HOM05D004161 ORTHO05D383978 1.7e-07 61.2 40 72.5
SEGI_07498 Sequoiadendron giganteum HOM05D004161 ORTHO05D015225 3.8e-07 60.1 58 56.9
vmacro15449 Vaccinium macrocarpon HOM05D000129 ORTHO05D000144 2.5e-06 57.4 42 59.5
HPP92_010234 Vanilla planifolia HOM05D004161 ORTHO05D015225 2.5e-06 57.4 36 72.2
SEGI_34415 Sequoiadendron giganteum HOM05D004161 ORTHO05D005770 7.2e-06 55.8 36 66.7


User provided reference genes

Program Settings