Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34638 Brassica carinata HOM05D007216 ORTHO05D009261 1.2e-130 469.9 247 100.0
C07p26230 Brassica napus HOM05D007216 ORTHO05D009261 1.2e-130 469.9 247 100.0
BolC7t43151H Brassica oleracea HOM05D007216 ORTHO05D009261 1.2e-130 469.9 247 100.0
A06p47770 Brassica napus HOM05D007216 ORTHO05D009261 6.7e-118 427.6 236 95.8
BcaC06g31685 Brassica carinata HOM05D007216 ORTHO05D009261 4.4e-109 398.3 248 85.9
BraA06t27645Z Brassica rapa HOM05D007216 ORTHO05D009261 5.9e-106 387.9 215 94.9
Thhalv10003353m.g Eutrema salsugineum HOM05D007216 ORTHO05D009261 5.2e-94 348.2 252 78.2
BcaC04g21907 Brassica carinata HOM05D007216 ORTHO05D009261 1.0e-89 334.0 247 75.3
BraA09t37658Z Brassica rapa HOM05D007216 ORTHO05D009261 8.5e-89 330.9 247 74.1
SpUn0744_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 4.2e-88 328.6 216 80.1
CARHR006300 Cardamine hirsuta HOM05D007216 ORTHO05D009261 2.7e-87 325.9 250 70.0
A09p20520 Brassica napus HOM05D007216 ORTHO05D009261 4.0e-86 322.0 255 72.2
BolC9t55498H Brassica oleracea HOM05D007216 ORTHO05D009261 1.7e-84 316.6 248 72.6
AL390U10010 Arabidopsis lyrata HOM05D007216 ORTHO05D009261 9.1e-83 310.8 252 71.0
BcaB07g31004 Brassica carinata HOM05D007216 ORTHO05D009261 3.3e-80 302.4 245 71.4
C09p25930 Brassica napus HOM05D007216 ORTHO05D009261 2.9e-76 289.3 216 75.0
Carub.0008s0499 Capsella rubella HOM05D007216 ORTHO05D009261 1.3e-73 280.4 239 67.4
SpUn0429_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 6.4e-68 261.5 215 67.4
Aa31LG5G3580 Aethionema arabicum HOM05D007216 ORTHO05D009261 6.0e-66 255.0 248 58.5
AT5G43650 Arabidopsis thaliana HOM05D007216 ORTHO05D009261 1.0e-65 254.2 220 67.7
THA.LOC104827376 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 1.2e-50 204.1 246 50.4
THA.LOC104801097 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 6.2e-47 191.8 278 43.2
Cfa008380 Carpinus fangiana HOM05D007216 ORTHO05D009261 1.4e-35 154.1 206 46.1
CSS0019068 Camellia sinensis var. sinensis HOM05D007216 ORTHO05D009261 2.4e-35 153.3 176 51.7
Haze_11299 Corylus avellana HOM05D007216 ORTHO05D009261 4.2e-35 152.5 201 47.8
Haze_11297 Corylus avellana HOM05D007216 ORTHO05D009261 1.6e-34 150.6 218 45.9
QL06p015626 Quercus lobata HOM05D007216 ORTHO05D009261 6.0e-34 148.7 206 43.7
Atru.chr4.2233 Acer truncatum HOM05D007216 ORTHO05D009261 5.6e-32 142.1 201 44.8
Duzib151G0820 Durio zibethinus HOM05D007216 ORTHO05D009261 1.3e-31 141.0 183 45.9
Cpa.g.sc58.45 Carica papaya HOM05D007216 ORTHO05D009261 1.6e-31 140.6 204 41.7
Ciclev10005777m.g Citrus clementina HOM05D007216 ORTHO05D009261 4.8e-31 139.0 205 42.4
Duzib151G0028 Durio zibethinus HOM05D007216 ORTHO05D009261 6.2e-31 138.7 183 45.4
Thecc.04G245800 Theobroma cacao HOM05D007216 ORTHO05D009261 1.1e-30 137.9 177 45.8
TAR365G0907 Trochodendron aralioides HOM05D007216 ORTHO05D009261 2.4e-30 136.7 246 42.3
Actinidia08446 Actinidia chinensis HOM05D007216 ORTHO05D009261 4.0e-30 136.0 205 43.9
Actinidia05467 Actinidia chinensis HOM05D007216 ORTHO05D009261 5.3e-30 135.6 203 44.8
Rhsim02G0032900 Rhododendron simsii HOM05D007216 ORTHO05D009261 6.9e-30 135.2 179 46.9
Prupe.1G030500 Prunus persica HOM05D007216 ORTHO05D009261 2.0e-29 133.7 212 42.5
Duzib052G0756 Durio zibethinus HOM05D007216 ORTHO05D009261 3.4e-29 132.9 177 44.6
CiPaw.02G116600 Carya illinoinensis HOM05D007216 ORTHO05D009261 1.3e-28 131.0 182 45.1
Solyc09g083360.3 Solanum lycopersicum HOM05D007216 ORTHO05D009261 1.3e-28 131.0 209 40.7
Sopen09g032280 Solanum pennellii HOM05D007216 ORTHO05D009261 1.3e-28 131.0 206 40.8
Duzib212G0514 Durio zibethinus HOM05D007216 ORTHO05D009261 1.7e-28 130.6 215 41.4
RcHm_v2.0_Chr4g0390311 Rosa chinensis HOM05D007216 ORTHO05D009261 1.7e-28 130.6 220 42.3
Gohir.A09G222900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 2.2e-28 130.2 202 41.1
MD16G1208400 Malus domestica HOM05D007216 ORTHO05D009261 2.2e-28 130.2 208 43.8
PGR031G3332 Punica granatum HOM05D007216 ORTHO05D009261 2.2e-28 130.2 239 35.6
GSVIVG01018111001 Vitis vinifera HOM05D007216 ORTHO05D009261 3.8e-28 129.4 169 48.5
Dinv29914 Davidia involucrata HOM05D007216 ORTHO05D009261 8.4e-28 128.3 148 52.0
QL06p015621 Quercus lobata HOM05D007216 ORTHO05D009261 8.4e-28 128.3 185 42.2
CiPaw.01G190600 Carya illinoinensis HOM05D007216 ORTHO05D009261 1.1e-27 127.9 207 41.1
Potri.010G077000 Populus trichocarpa HOM05D007216 ORTHO05D009261 1.1e-27 127.9 230 37.4
DCAR_027275 Daucus carota HOM05D007216 ORTHO05D009261 1.4e-27 127.5 202 39.6
Gorai.006G246400 Gossypium raimondii HOM05D007216 ORTHO05D009261 1.4e-27 127.5 175 44.0
FvH4_4g02610 Fragaria vesca HOM05D007216 ORTHO05D009261 1.9e-27 127.1 209 43.5
COL.COLO4_15786 Corchorus olitorius HOM05D007216 ORTHO05D009261 3.2e-27 126.3 183 43.2
Cc03_g04820 Coffea canephora HOM05D007216 ORTHO05D009261 7.1e-27 125.2 207 43.0
Eucgr.H00196 Eucalyptus grandis HOM05D007216 ORTHO05D009261 7.1e-27 125.2 203 40.9
Gohir.D09G224900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 7.1e-27 125.2 174 43.7
MD13G1206900 Malus domestica HOM05D007216 ORTHO05D009261 7.1e-27 125.2 206 40.3
Medtr1g040435 Medicago truncatula HOM05D007216 ORTHO05D009261 1.6e-26 124.0 214 40.7
Peaxi162Scf00813g00118 Petunia axillaris HOM05D007216 ORTHO05D009261 5.1e-25 119.0 186 39.8
Potri.008G161800 Populus trichocarpa HOM05D007216 ORTHO05D009261 6.7e-25 118.6 202 39.1
Sabra10G0031800 Salix brachista HOM05D007216 ORTHO05D009261 1.1e-24 117.9 234 35.9
TWI73G0753 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 1.1e-24 117.9 172 41.3
ATR0665G548 Amborella trichopoda HOM05D007216 ORTHO05D009261 1.9e-24 117.1 198 38.9
CsaV3_2G013060 Cucumis sativus L. HOM05D007216 ORTHO05D009261 2.5e-24 116.7 187 41.7
Oeu008788.2 Olea europaea HOM05D007216 ORTHO05D009261 3.3e-24 116.3 214 38.3
Migut.G00433 Erythranthe guttata HOM05D007216 ORTHO05D009261 4.3e-24 115.9 226 37.6
Eucgr.J01563 Eucalyptus grandis HOM05D007216 ORTHO05D009261 9.6e-24 114.8 179 42.5
Sed0000846 Sechium edule HOM05D007216 ORTHO05D009261 9.6e-24 114.8 180 42.8
Sed0019243 Sechium edule HOM05D007216 ORTHO05D009261 9.6e-24 114.8 180 42.8
FAN12G1817 Fragaria x ananassa HOM05D007216 ORTHO05D009261 1.3e-23 114.4 188 42.6
MSTRG.4097 Avicennia marina HOM05D007216 ORTHO05D009261 1.6e-23 114.0 209 37.8
CANSAT78G2280 Cannabis sativa HOM05D007216 ORTHO05D009261 2.8e-23 113.2 249 34.5
MELO3C026778.2 Cucumis melo HOM05D007216 ORTHO05D009261 3.7e-23 112.8 186 41.4
Glyma.02G000800 Glycine max HOM05D007216 ORTHO05D009261 3.7e-23 112.8 251 35.9
TWI09G1088 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 3.7e-23 112.8 182 37.9
Sc13g0004990 Simmondsia chinensis HOM05D007216 ORTHO05D009261 4.8e-23 112.5 221 41.2
Sed0021571 Sechium edule HOM05D007216 ORTHO05D009261 6.2e-23 112.1 188 37.8
Manes.03G169100 Manihot esculenta HOM05D007216 ORTHO05D009261 8.1e-23 111.7 202 36.1
Nn3g19525 Nelumbo nucifera HOM05D007216 ORTHO05D009261 1.4e-22 110.9 204 40.2
DCAR_027276 Daucus carota HOM05D007216 ORTHO05D009261 3.1e-22 109.8 206 37.9
Nn1g02593 Nelumbo nucifera HOM05D007216 ORTHO05D009261 4.0e-22 109.4 209 38.3
Psat6g102240 Pisum sativum HOM05D007216 ORTHO05D009261 6.9e-22 108.6 206 39.3
TAR636G2640 Trochodendron aralioides HOM05D007216 ORTHO05D009261 6.9e-22 108.6 193 40.4
Lalb_Chr03g0037861 Lupinus albus HOM05D007216 ORTHO05D009261 1.3e-20 104.4 192 39.6
ClCG06G006720 Citrullus lanatus HOM05D007216 ORTHO05D009261 1.7e-20 104.0 188 38.8
Sabra08G0123600 Salix brachista HOM05D007216 ORTHO05D009261 2.2e-20 103.6 186 37.1
Gorai.005G046700 Gossypium raimondii HOM05D007216 ORTHO05D009261 4.9e-20 102.4 175 38.3
Gohir.D02G042400 Gossypium hirsutum HOM05D007216 ORTHO05D009261 6.5e-20 102.1 175 38.3
Gohir.A02G035500 Gossypium hirsutum HOM05D007216 ORTHO05D009261 9.3e-19 98.2 175 37.1
Zm00001eb056760 Zea mays HOM05D007216 ORTHO05D009261 1.8e-17 94.0 155 40.0
TPR.G22479 Trifolium pratense HOM05D007216 ORTHO05D009261 1.1e-16 91.3 208 36.5
Phvul.007G280700 Phaseolus vulgaris HOM05D007216 ORTHO05D009261 1.5e-16 90.9 161 40.4
Dinv44631 Davidia involucrata HOM05D007216 ORTHO05D009261 7.4e-16 88.6 111 47.7
Os03g0741100 Oryza sativa ssp. japonica HOM05D007216 ORTHO05D009261 1.6e-15 87.4 149 38.3
Nitab4.5_0004798g0070 Nicotiana tabacum HOM05D007216 ORTHO05D009261 2.8e-15 86.7 240 30.8
Hma1.2p1_0893F.1_g233480 Hydrangea macrophylla HOM05D007216 ORTHO05D009261 3.7e-15 86.3 103 52.4
Lj6C656T7 Lonicera japonica HOM05D007216 ORTHO05D009261 3.8e-12 76.3 192 34.4
Nitab4.5_0000525g0160 Nicotiana tabacum HOM05D007216 ORTHO05D009261 3.2e-11 73.2 176 31.8
HPP92_023468 Vanilla planifolia HOM05D007216 ORTHO05D009261 4.2e-11 72.8 218 34.4
HPP92_023463 Vanilla planifolia HOM05D007216 ORTHO05D009261 5.5e-11 72.4 218 34.4
CAN.G1007.15 Capsicum annuum HOM05D007216 ORTHO05D009261 1.2e-10 71.2 103 43.7
Aqoxy5G00327 Aquilegia oxysepala HOM05D007216 ORTHO05D009261 1.6e-10 70.9 120 34.2
HPP92_027840 Vanilla planifolia HOM05D007216 ORTHO05D009261 1.0e-09 68.2 193 33.7
Os01g0773800 Oryza sativa ssp. japonica HOM05D007216 ORTHO05D049898 2.4e-06 57.0 200 33.5
Zm00001eb370010 Zea mays HOM05D007216 ORTHO05D049898 4.1e-06 56.2 157 30.6


User provided reference genes

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