Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34618 Brassica carinata HOM05D003431 ORTHO05D027670 5.6e-75 284.3 150 100.0
C07p26410 Brassica napus HOM05D003431 ORTHO05D027670 1.5e-48 196.4 102 97.1
A02p15310 Brassica napus HOM05D003431 ORTHO05D027670 2.4e-46 189.1 102 93.1
A04p21520 Brassica napus HOM05D003431 ORTHO05D027670 2.4e-46 189.1 102 93.1
A07p12440 Brassica napus HOM05D003431 ORTHO05D005152 3.0e-36 155.6 114 69.3
BraA07t29025Z Brassica rapa HOM05D003431 ORTHO05D005152 3.0e-36 155.6 114 69.3
BolC7t42349H Brassica oleracea HOM05D003431 ORTHO05D005152 9.6e-35 150.6 114 67.5
BcaB03g12039 Brassica carinata HOM05D003431 ORTHO05D005152 1.3e-34 150.2 114 67.5
BcaC05g26690 Brassica carinata HOM05D003431 ORTHO05D005152 1.3e-34 150.2 114 67.5
CARHR026300 Cardamine hirsuta HOM05D003431 ORTHO05D005152 2.1e-34 149.4 114 67.5
BcaC06g35235 Brassica carinata HOM05D003431 ORTHO05D005152 2.8e-34 149.1 137 59.1
C07p18390 Brassica napus HOM05D003431 ORTHO05D005152 4.8e-34 148.3 98 74.5
C05p25340 Brassica napus HOM05D003431 ORTHO05D005152 8.1e-34 147.5 114 66.7
Sp1g23030 Schrenkiella parvula HOM05D003431 ORTHO05D005152 8.1e-34 147.5 114 66.7
BraA08t34627Z Brassica rapa HOM05D003431 ORTHO05D005152 1.1e-33 147.1 114 65.8
BcaC05g26486 Brassica carinata HOM05D003431 ORTHO05D005152 3.1e-33 145.6 114 65.8
BcaC01g01674 Brassica carinata HOM05D003431 ORTHO05D005152 4.0e-33 145.2 114 64.9
BolC3t19610H Brassica oleracea HOM05D003431 ORTHO05D005152 4.0e-33 145.2 114 64.9
A09p39090 Brassica napus HOM05D003431 ORTHO05D005152 5.3e-33 144.8 114 65.8
BraA09t39409Z Brassica rapa HOM05D003431 ORTHO05D005152 5.3e-33 144.8 114 65.8
BolC5t31269H Brassica oleracea HOM05D003431 ORTHO05D005152 1.5e-32 143.3 114 65.8
Thhalv10008680m.g Eutrema salsugineum HOM05D003431 ORTHO05D005152 4.5e-32 141.7 114 64.9
A08p26810 Brassica napus HOM05D003431 ORTHO05D005152 9.9e-32 140.6 98 69.4
C03p73140 Brassica napus HOM05D003431 ORTHO05D005152 9.9e-32 140.6 98 69.4
Aa31LG7G9280 Aethionema arabicum HOM05D003431 ORTHO05D005152 2.9e-31 139.0 114 62.3
BcaB03g14023 Brassica carinata HOM05D003431 ORTHO05D005152 2.9e-31 139.0 122 62.3
AT1G25260 Arabidopsis thaliana HOM05D003431 ORTHO05D005152 3.8e-31 138.7 114 62.3
AL1G40100 Arabidopsis lyrata HOM05D003431 ORTHO05D005152 4.9e-31 138.3 114 61.4
Carub.0001s2531 Capsella rubella HOM05D003431 ORTHO05D005152 1.4e-30 136.7 114 60.5
Thecc.02G041300 Theobroma cacao HOM05D003431 ORTHO05D005152 3.3e-27 125.6 114 56.1
CANSAT11G1865 Cannabis sativa HOM05D003431 ORTHO05D005152 5.6e-27 124.8 115 53.9
Cpa.g.sc2.27 Carica papaya HOM05D003431 ORTHO05D005152 7.4e-27 124.4 114 57.9
Lsat_1_v5_gn_7_77981 Lactuca sativa HOM05D003431 ORTHO05D005152 7.4e-27 124.4 115 54.8
Manes.07G013300 Manihot esculenta HOM05D003431 ORTHO05D005152 7.4e-27 124.4 115 54.8
Duzib248G1379 Durio zibethinus HOM05D003431 ORTHO05D005152 1.6e-26 123.2 114 56.1
TAR633G0411 Trochodendron aralioides HOM05D003431 ORTHO05D005152 1.6e-26 123.2 115 53.0
Gohir.A01G176900 Gossypium hirsutum HOM05D003431 ORTHO05D005152 2.1e-26 122.9 114 55.3
Gohir.D01G167700 Gossypium hirsutum HOM05D003431 ORTHO05D005152 2.1e-26 122.9 114 55.3
Gorai.002G208400 Gossypium raimondii HOM05D003431 ORTHO05D005152 2.1e-26 122.9 114 55.3
Potri.001G460100 Populus trichocarpa HOM05D003431 ORTHO05D005152 2.1e-26 122.9 115 54.8
Duzib132G0664 Durio zibethinus HOM05D003431 ORTHO05D005152 2.8e-26 122.5 114 54.4
Atru.chr6.1079 Acer truncatum HOM05D003431 ORTHO05D005152 4.8e-26 121.7 114 56.1
CiPaw.05G042700 Carya illinoinensis HOM05D003431 ORTHO05D005152 4.8e-26 121.7 115 53.0
DCAR_013995 Daucus carota HOM05D003431 ORTHO05D005152 8.2e-26 120.9 115 54.8
Manes.10G132200 Manihot esculenta HOM05D003431 ORTHO05D005152 8.2e-26 120.9 115 53.9
Sabra16G0311800 Salix brachista HOM05D003431 ORTHO05D005152 8.2e-26 120.9 115 53.9
TWI14G0641 Tripterygium wilfordii HOM05D003431 ORTHO05D005152 8.2e-26 120.9 115 53.0
TWI23G0077 Tripterygium wilfordii HOM05D003431 ORTHO05D005152 8.2e-26 120.9 115 53.9
QL02p098641 Quercus lobata HOM05D003431 ORTHO05D005152 1.1e-25 120.6 115 52.2
Atru.chr6.1030 Acer truncatum HOM05D003431 ORTHO05D005152 1.4e-25 120.2 114 56.1
MD15G1418800 Malus domestica HOM05D003431 ORTHO05D005152 1.8e-25 119.8 115 53.0
CiPaw.06G149000 Carya illinoinensis HOM05D003431 ORTHO05D005152 2.4e-25 119.4 115 52.2
Actinidia39056 Actinidia chinensis HOM05D003431 ORTHO05D005152 3.1e-25 119.0 115 53.0
Potri.011G156300 Populus trichocarpa HOM05D003431 ORTHO05D005152 3.1e-25 119.0 115 53.9
THA.LOC104807949 Tarenaya hassleriana HOM05D003431 ORTHO05D005152 3.1e-25 119.0 115 53.9
MD08G1225200 Malus domestica HOM05D003431 ORTHO05D005152 5.3e-25 118.2 115 52.2
Psat1g220040 Pisum sativum HOM05D003431 ORTHO05D005152 5.3e-25 118.2 115 52.2
PGR142G4046 Punica granatum HOM05D003431 ORTHO05D005152 6.9e-25 117.9 115 52.2
VMungo0540G2199 Vigna mungo HOM05D003431 ORTHO05D005152 6.9e-25 117.9 123 52.0
GSVIVG01023018001 Vitis vinifera HOM05D003431 ORTHO05D005152 6.9e-25 117.9 115 50.4
HanXRQChr01g0021831 Helianthus annuus HOM05D003431 ORTHO05D005152 9.0e-25 117.5 115 52.2
HanXRQChr03g0066511 Helianthus annuus HOM05D003431 ORTHO05D005152 9.0e-25 117.5 115 51.3
Sabra11G0143500 Salix brachista HOM05D003431 ORTHO05D005152 9.0e-25 117.5 115 52.2
Aqoxy4G02442 Aquilegia oxysepala HOM05D003431 ORTHO05D005152 1.2e-24 117.1 113 52.2
Dinv24261 Davidia involucrata HOM05D003431 ORTHO05D005152 1.2e-24 117.1 115 50.4
Nn2g13208 Nelumbo nucifera HOM05D003431 ORTHO05D005152 1.2e-24 117.1 115 49.6
Prupe.1G562900 Prunus persica HOM05D003431 ORTHO05D005152 1.2e-24 117.1 115 51.3
Ca_00090_v3 Cicer arietinum L. HOM05D003431 ORTHO05D005152 1.5e-24 116.7 115 51.3
Ca_29929_v3 Cicer arietinum L. HOM05D003431 ORTHO05D005152 1.5e-24 116.7 115 51.3
Haze_13054 Corylus avellana HOM05D003431 ORTHO05D005152 1.5e-24 116.7 115 52.2
Glyma.08G184300 Glycine max HOM05D003431 ORTHO05D005152 1.5e-24 116.7 123 51.2
Hma1.2p1_0557F.1_g178330 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 1.5e-24 116.7 113 53.1
Hma1.2p1_2850F.1_g329406 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 1.5e-24 116.7 113 53.1
Lj6g0011327 Lotus japonicus HOM05D003431 ORTHO05D005152 1.5e-24 116.7 115 52.2
vmacro01777 Vaccinium macrocarpon HOM05D003431 ORTHO05D005152 1.5e-24 116.7 113 52.2
MSTRG.16533 Avicennia marina HOM05D003431 ORTHO05D005152 2.0e-24 116.3 115 48.7
CSS0006665 Camellia sinensis var. sinensis HOM05D003431 ORTHO05D005152 2.0e-24 116.3 115 51.3
ECA236G3864 Erigeron canadensis HOM05D003431 ORTHO05D005152 2.0e-24 116.3 115 51.3
SalBow6G0908 Salvia bowleyana HOM05D003431 ORTHO05D005152 2.6e-24 115.9 115 50.4
Oeu000195.1 Olea europaea HOM05D003431 ORTHO05D005152 3.4e-24 115.5 115 50.4
Glyma.15G048200 Glycine max HOM05D003431 ORTHO05D005152 4.5e-24 115.2 123 51.2
Sed0002836 Sechium edule HOM05D003431 ORTHO05D005152 4.5e-24 115.2 115 49.6
Sed0006026 Sechium edule HOM05D003431 ORTHO05D005152 4.5e-24 115.2 115 49.6
Cfa014508 Carpinus fangiana HOM05D003431 ORTHO05D005152 5.8e-24 114.8 115 51.3
FAN04G1904 Fragaria x ananassa HOM05D003431 ORTHO05D005152 5.8e-24 114.8 115 49.6
Sc11g0006640 Simmondsia chinensis HOM05D003431 ORTHO05D005152 5.8e-24 114.8 115 50.4
Rhsim11G0131700 Rhododendron simsii HOM05D003431 ORTHO05D005152 7.6e-24 114.4 115 49.6
SHI16687 Sapria himalayana HOM05D003431 ORTHO05D005152 7.6e-24 114.4 114 51.8
Hma1.2p1_0557F.1_g178340 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 1.0e-23 114.0 97 56.7
Solyc01g104470.3 Solanum lycopersicum HOM05D003431 ORTHO05D005152 1.0e-23 114.0 115 51.3
FvH4_5g30060 Fragaria vesca HOM05D003431 ORTHO05D005152 1.3e-23 113.6 115 48.7
FAN08G2387 Fragaria x ananassa HOM05D003431 ORTHO05D005152 1.3e-23 113.6 115 48.7
FAN18G1423 Fragaria x ananassa HOM05D003431 ORTHO05D005152 1.3e-23 113.6 115 48.7
Peaxi162Scf00011g00014 Petunia axillaris HOM05D003431 ORTHO05D005152 1.3e-23 113.6 115 51.3
PSO170G4153 Papaver somniferum HOM05D003431 ORTHO05D005152 1.7e-23 113.2 113 50.4
RcHm_v2.0_Chr7g0224251 Rosa chinensis HOM05D003431 ORTHO05D005152 1.7e-23 113.2 115 48.7
Phvul.006G212200 Phaseolus vulgaris HOM05D003431 ORTHO05D005152 2.2e-23 112.8 123 51.2
Sopen01g046970 Solanum pennellii HOM05D003431 ORTHO05D005152 2.2e-23 112.8 115 50.4
PGSC0003DMG400023745 Solanum tuberosum HOM05D003431 ORTHO05D005152 2.2e-23 112.8 115 51.3
FAN13G1098 Fragaria x ananassa HOM05D003431 ORTHO05D005152 2.9e-23 112.5 115 47.8
MBI15_g28822_MAGBIO Magnolia biondii HOM05D003431 ORTHO05D005152 2.9e-23 112.5 115 48.7
arahy.Tifrunner.gnm1.ann1.N8P1ZJ Arachis hypogaea HOM05D003431 ORTHO05D005152 4.9e-23 111.7 115 50.4
EL10Ac3g07449 Beta vulgaris HOM05D003431 ORTHO05D005152 4.9e-23 111.7 115 49.6
arahy.Tifrunner.gnm1.ann1.I5HCXG Arachis hypogaea HOM05D003431 ORTHO05D005152 6.5e-23 111.3 115 49.6
Medtr2g007780 Medicago truncatula HOM05D003431 ORTHO05D005152 6.5e-23 111.3 115 47.8
Lsat_1_v5_gn_9_116360 Lactuca sativa HOM05D003431 ORTHO05D005152 8.4e-23 110.9 115 48.7
CDE12G0598 Ceratophyllum demersum HOM05D003431 ORTHO05D005152 1.1e-22 110.5 128 44.5
AUR62018551 Chenopodium quinoa HOM05D003431 ORTHO05D005152 1.1e-22 110.5 115 48.7
AUR62020868 Chenopodium quinoa HOM05D003431 ORTHO05D005152 1.1e-22 110.5 115 48.7
Dinv19350 Davidia involucrata HOM05D003431 ORTHO05D005152 1.1e-22 110.5 114 50.0
SGA_v2.0_scaffold1G00326 Striga asiatica HOM05D003431 ORTHO05D005152 1.1e-22 110.5 115 46.1
Ciclev10002376m.g Citrus clementina HOM05D003431 ORTHO05D005152 1.4e-22 110.2 114 53.5
Lj9A308T36 Lonicera japonica HOM05D003431 ORTHO05D005152 1.4e-22 110.2 114 49.1
Lalb_Chr18g0060821 Lupinus albus HOM05D003431 ORTHO05D005152 1.4e-22 110.2 115 47.8
unitig_22.g6119 Utricularia gibba HOM05D003431 ORTHO05D005152 1.4e-22 110.2 115 47.8
PSO017G6291 Papaver somniferum HOM05D003431 ORTHO05D005152 1.9e-22 109.8 113 49.6
CsaV3_2G018120 Cucumis sativus L. HOM05D003431 ORTHO05D005152 2.5e-22 109.4 115 47.0
Oeu026055.1 Olea europaea HOM05D003431 ORTHO05D005152 3.2e-22 109.0 99 51.5
CDE06G1320 Ceratophyllum demersum HOM05D003431 ORTHO05D005152 4.2e-22 108.6 128 45.3
Cc02_g22270 Coffea canephora HOM05D003431 ORTHO05D005152 4.2e-22 108.6 115 47.0
TPR.G39937 Trifolium pratense HOM05D003431 ORTHO05D005152 5.5e-22 108.2 115 48.7
PSO339G0293 Papaver somniferum HOM05D003431 ORTHO05D005152 7.1e-22 107.8 115 47.0
Migut.B00667 Erythranthe guttata HOM05D003431 ORTHO05D005152 9.3e-22 107.5 113 46.9
PSO801G0645 Papaver somniferum HOM05D003431 ORTHO05D005152 1.2e-21 107.1 115 47.0
Hund24426 Selenicereus undatus HOM05D003431 ORTHO05D005152 1.6e-21 106.7 115 47.8
Nitab4.5_0010140g0020 Nicotiana tabacum HOM05D003431 ORTHO05D005152 2.1e-21 106.3 115 50.4
Eucgr.I02710 Eucalyptus grandis HOM05D003431 ORTHO05D005152 2.7e-21 105.9 113 47.8
ATR0174G027 Amborella trichopoda HOM05D003431 ORTHO05D005152 1.3e-20 103.6 114 44.7
AagrBONN_evm.TU.Sc2ySwM_369.396 Anthoceros agrestis HOM05D003431 ORTHO05D005152 1.5e-19 100.1 113 46.9
Nitab4.5_0005539g0060 Nicotiana tabacum HOM05D003431 ORTHO05D005152 1.9e-19 99.8 114 50.0
HPP92_026977 Vanilla planifolia HOM05D003431 ORTHO05D005152 2.5e-19 99.4 115 43.5
HPP92_015419 Vanilla planifolia HOM05D003431 ORTHO05D005152 1.3e-18 97.1 115 43.5
SMO367G0584 Selaginella moellendorffii HOM05D003431 ORTHO05D005152 8.2e-18 94.4 115 43.5
Pp3c11_25500 Physcomitrium patens HOM05D003431 ORTHO05D005152 1.4e-17 93.6 113 43.4
BolC5t29949H Brassica oleracea HOM05D003431 ORTHO05D005152 3.1e-17 92.4 70 67.1
ClCG02G000650 Citrullus lanatus HOM05D003431 ORTHO05D005152 4.1e-17 92.0 118 44.9
SGA_v2.0_scaffold110G31286 Striga asiatica HOM05D003431 ORTHO05D005152 9.0e-17 90.9 99 43.4
Zm00001eb094240 Zea mays HOM05D003431 ORTHO05D005152 2.0e-16 89.7 119 39.5
Pp3s128_30 Physcomitrium patens HOM05D003431 ORTHO05D005152 3.4e-16 89.0 118 40.7
TAR636G0765 Trochodendron aralioides HOM05D003431 ORTHO05D005152 3.4e-16 89.0 112 42.9
Mapoly0015s0017 Marchantia polymorpha HOM05D003431 ORTHO05D005152 4.5e-16 88.6 115 39.1
Zm00001eb163260 Zea mays HOM05D003431 ORTHO05D005152 7.6e-16 87.8 119 38.7
Os11g0105400 Oryza sativa ssp. japonica HOM05D003431 ORTHO05D005152 1.7e-15 86.7 127 38.6
Os12g0105200 Oryza sativa ssp. japonica HOM05D003431 ORTHO05D005152 3.2e-14 82.4 115 38.3
A05p13450 Brassica napus HOM05D003431 ORTHO05D100885 1.1e-11 73.9 89 48.3
CBR_g26270 Chara braunii HOM05D003431 ORTHO05D005152 1.5e-11 73.6 85 47.1
Cre06.g261700 Chlamydomonas reinhardtii HOM05D003431 ORTHO05D005152 6.3e-10 68.2 116 31.0
Hma1.2p1_1038F.1_g250760 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 4.1e-09 65.5 65 50.8
CAN.G1352.24 Capsicum annuum HOM05D003431 ORTHO05D005152 5.3e-09 65.1 124 34.7
Cfa023894 Carpinus fangiana HOM05D003431 ORTHO05D005152 5.3e-09 65.1 113 34.5
MCO04G167 Micromonas commoda HOM05D003431 ORTHO05D005152 5.3e-09 65.1 114 32.5
A05p19340 Brassica napus HOM05D003431 ORTHO05D014368 1.2e-08 63.9 50 70.0
SEGI_34754 Sequoiadendron giganteum HOM05D003431 ORTHO05D005152 1.5e-08 63.5 66 48.5
C05p02190 Brassica napus HOM05D003431 ORTHO05D014368 2.0e-08 63.2 50 66.0
Ah.04g149460 Amaranthus hybridus HOM05D003431 ORTHO05D005152 4.5e-08 62.0 64 48.4
BcaC07g37686 Brassica carinata HOM05D003431 ORTHO05D032197 7.7e-08 61.2 67 53.7
MELO3C034572.2 Cucumis melo HOM05D003431 ORTHO05D005152 5.0e-07 58.5 63 44.4
BolC6t38529H Brassica oleracea HOM05D003431 ORTHO05D014368 1.1e-06 57.4 43 72.1
BcaC05g27507 Brassica carinata HOM05D003431 ORTHO05D014368 1.4e-06 57.0 45 64.4


User provided reference genes

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