Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 4.4e-131 471.5 271 100.0
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 1.4e-129 466.5 271 99.3
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 1.4e-129 466.5 271 99.3
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 4.6e-128 461.5 271 97.8
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 1.8e-124 449.5 291 91.1
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 1.3e-119 433.3 273 89.4
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 4.2e-113 411.8 281 87.9
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 5.5e-105 384.8 288 83.7
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 1.3e-103 380.2 279 85.3
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 7.9e-96 354.4 279 72.8
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 1.3e-93 347.1 280 73.2
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 1.1e-92 344.0 279 76.3
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 4.1e-92 342.0 285 75.1
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 6.1e-88 328.2 268 75.4
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 7.7e-67 258.1 181 74.6
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 1.0e-66 257.7 185 73.0
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 2.2e-66 256.5 185 73.0
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 1.1e-65 254.2 186 69.9
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 2.5e-65 253.1 180 73.3
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 7.2e-65 251.5 179 74.3
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 9.4e-65 251.1 179 73.2
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 9.4e-65 251.1 180 71.1
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 1.2e-64 250.8 283 51.9
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 1.2e-64 250.8 180 71.1
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 1.2e-64 250.8 185 73.0
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 1.6e-64 250.4 179 72.1
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 2.1e-64 250.0 179 72.1
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 2.7e-64 249.6 185 69.2
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 2.7e-64 249.6 286 58.0
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 2.7e-64 249.6 185 69.7
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 4.7e-64 248.8 178 73.0
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 1.0e-63 247.7 187 69.0
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 3.0e-63 246.1 184 68.5
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 4.0e-63 245.7 180 70.0
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 4.0e-63 245.7 185 68.6
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 5.2e-63 245.4 179 70.9
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 5.2e-63 245.4 180 70.0
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 8.8e-63 244.6 186 71.0
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 1.2e-62 244.2 184 69.6
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 1.5e-62 243.8 186 68.3
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 1.5e-62 243.8 179 70.9
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 2.6e-62 243.0 180 69.4
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 3.4e-62 242.7 180 73.9
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 4.4e-62 242.3 185 70.3
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 4.4e-62 242.3 185 68.1
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 5.7e-62 241.9 184 68.5
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 5.7e-62 241.9 184 68.5
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 5.7e-62 241.9 185 67.6
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 9.8e-62 241.1 179 68.2
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 9.8e-62 241.1 180 69.4
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 2.2e-61 240.0 177 70.6
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 2.8e-61 239.6 185 64.9
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 2.8e-61 239.6 188 69.1
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 3.7e-61 239.2 182 70.3
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 4.8e-61 238.8 185 68.1
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 4.8e-61 238.8 182 69.8
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 1.1e-60 237.7 186 68.8
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 2.7e-59 233.0 181 69.1
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 2.7e-59 233.0 204 62.7
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 7.7e-59 231.5 181 68.5
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 1.3e-58 230.7 181 68.0
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 1.7e-58 230.3 228 58.3
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 5.0e-58 228.8 187 65.2
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 6.1e-56 221.9 187 62.0
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 8.0e-56 221.5 171 67.3
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 1.4e-55 220.7 182 60.4
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 1.4e-55 220.7 187 63.1
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 1.8e-55 220.3 182 60.4
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 5.2e-55 218.8 182 64.8
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 8.9e-55 218.0 180 67.8
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 2.0e-54 216.9 170 65.9
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 2.6e-54 216.5 157 69.4
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 1.3e-53 214.2 169 62.1
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.3e-53 214.2 170 66.5
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 2.8e-53 213.0 170 65.9
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 3.7e-53 212.6 170 65.9
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 6.3e-53 211.8 157 70.7
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 8.3e-53 211.5 171 64.9
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 2.9e-50 203.0 165 63.0
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 1.9e-49 200.3 144 71.5
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 5.6e-49 198.7 170 60.6
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 9.5e-49 198.0 143 68.5
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 1.0e-47 194.5 148 66.2
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 3.0e-47 193.0 140 67.1
Lj1A1152G38 Lonicera japonica HOM05D002102 ORTHO05D008242 4.0e-47 192.6 149 69.8
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 6.4e-45 185.3 140 67.1
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 9.2e-44 181.4 128 69.5
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 2.3e-42 176.8 180 53.3
HPP92_001585 Vanilla planifolia HOM05D002102 ORTHO05D008242 1.1e-41 174.5 156 59.0
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 1.9e-41 173.7 186 54.3
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 2.8e-40 169.9 182 51.6
C02p45240 Brassica napus HOM05D002102 ORTHO05D008242 1.1e-39 167.9 147 68.0
BolC2t10554H Brassica oleracea HOM05D002102 ORTHO05D008242 7.5e-38 161.8 147 68.0
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.3e-37 161.0 168 53.6
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 1.4e-36 157.5 185 52.4
A02p28510 Brassica napus HOM05D002102 ORTHO05D008242 5.4e-36 155.6 279 45.2
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 7.0e-36 155.2 183 50.3
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 6.0e-35 152.1 143 56.6
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 1.3e-34 151.0 139 57.6
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 2.5e-33 146.7 114 67.5
AagrBONN_evm.TU.Sc2ySwM_368.1584 Anthoceros agrestis HOM05D002102 ORTHO05D008242 6.2e-32 142.1 159 50.3
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 3.4e-30 136.3 214 42.1
BraA02t07887Z Brassica rapa HOM05D002102 ORTHO05D008242 8.3e-29 131.7 116 66.4
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 3.9e-26 122.9 110 58.2
HPP92_001768 Vanilla planifolia HOM05D001389 ORTHO05D002892 1.9e-25 120.6 105 57.1
Oeu011782.1 Olea europaea HOM05D002102 ORTHO05D008242 1.2e-24 117.9 131 51.9
RcHm_v2.0_Chr5g0021891 Rosa chinensis HOM05D002102 ORTHO05D008242 2.1e-24 117.1 85 68.2
BcaC03g16684 Brassica carinata HOM05D002102 ORTHO05D008242 4.0e-23 112.8 73 86.3
Actinidia31357 Actinidia chinensis HOM05D002102 ORTHO05D008242 6.8e-23 112.1 87 70.1
RcHm_v2.0_Chr5g0021971 Rosa chinensis HOM05D002102 ORTHO05D008242 9.9e-22 108.2 74 73.0
Cre06.g280650 Chlamydomonas reinhardtii HOM05D002102 ORTHO05D008242 1.3e-21 107.8 192 37.5
Eucgr.L03440 Eucalyptus grandis HOM05D002102 ORTHO05D008242 1.7e-21 107.5 72 75.0
SEGI_24162 Sequoiadendron giganteum HOM05D002102 ORTHO05D008242 8.4e-21 105.1 97 55.7
CBR_g21832 Chara braunii HOM05D002102 ORTHO05D008242 7.1e-20 102.1 184 41.8
Hund01844 Selenicereus undatus HOM05D002102 ORTHO05D008242 9.2e-20 101.7 64 78.1
ATR0109G022 Amborella trichopoda HOM05D002102 ORTHO05D008242 1.2e-16 91.3 87 58.6
MD05G1242600 Malus domestica HOM05D002102 ORTHO05D008242 1.2e-14 84.7 65 67.7
Actinidia31356 Actinidia chinensis HOM05D002102 ORTHO05D008242 5.8e-14 82.4 64 64.1
RcHm_v2.0_Chr5g0021961 Rosa chinensis HOM05D002102 ORTHO05D008242 7.8e-11 72.0 58 60.3
RcHm_v2.0_Chr5g0021881 Rosa chinensis HOM05D002102 ORTHO05D008242 6.2e-08 62.4 50 58.0
Nitab4.5_0001815g0140 Nicotiana tabacum HOM05D002102 ORTHO05D004119 8.1e-08 62.0 107 35.5
RcHm_v2.0_Chr5g0021951 Rosa chinensis HOM05D002102 ORTHO05D008242 2.4e-07 60.5 48 60.4
Nitab4.5_0007687g0040 Nicotiana tabacum HOM05D002102 ORTHO05D008242 4.0e-07 59.7 43 62.8


User provided reference genes

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