Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34160 Brassica carinata HOM05D001678 ORTHO05D001698 1.8e-78 295.8 147 100.0
C07p32060 Brassica napus HOM05D001678 ORTHO05D001698 2.4e-75 285.4 150 96.7
BraA06t25821Z Brassica rapa HOM05D001678 ORTHO05D001698 5.1e-65 251.1 193 71.0
A01p29830 Brassica napus HOM05D001678 ORTHO05D001698 6.3e-55 217.6 189 64.0
BraA01t03111Z Brassica rapa HOM05D001678 ORTHO05D001698 6.3e-55 217.6 189 64.0
BcaC07g37804 Brassica carinata HOM05D001678 ORTHO05D001698 1.4e-54 216.5 189 63.5
BolC8t48193H Brassica oleracea HOM05D001678 ORTHO05D001698 1.4e-54 216.5 189 63.5
C02p32520 Brassica napus HOM05D001678 ORTHO05D001698 2.6e-53 212.2 189 62.4
BcaB01g02681 Brassica carinata HOM05D001678 ORTHO05D001698 4.2e-51 204.9 190 58.9
A01p28360 Brassica napus HOM05D001678 ORTHO05D001698 2.0e-40 169.5 93 91.4
Carub.0007s0094 Capsella rubella HOM05D001678 ORTHO05D001698 4.4e-40 168.3 196 51.5
Carub.0002s1509 Capsella rubella HOM05D001678 ORTHO05D001698 1.4e-33 146.7 196 41.8
Carub.0007s2622 Capsella rubella HOM05D001678 ORTHO05D001698 1.4e-33 146.7 196 41.8
A04p22040 Brassica napus HOM05D001678 ORTHO05D001698 1.6e-29 133.3 73 87.7
C09p55800 Brassica napus HOM05D001678 ORTHO05D001698 3.5e-29 132.1 73 86.3
AL4G17900 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 5.9e-29 131.3 158 51.3
BolC5t31786H Brassica oleracea HOM05D001678 ORTHO05D001698 1.3e-28 130.2 195 41.5
AL4G17660 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 1.7e-28 129.8 157 51.0
CARHR004570 Cardamine hirsuta HOM05D001678 ORTHO05D001698 1.9e-27 126.3 142 45.8
AL4G17920 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 9.4e-27 124.0 150 51.3
Carub.0006s2679 Capsella rubella HOM05D001678 ORTHO05D001698 9.4e-27 124.0 188 43.6
BolC3t16754H Brassica oleracea HOM05D001678 ORTHO05D001698 3.7e-23 112.1 191 35.6
BcaC05g27161 Brassica carinata HOM05D001678 ORTHO05D001698 6.3e-23 111.3 106 56.6
Carub.0006s2633 Capsella rubella HOM05D001678 ORTHO05D001698 8.3e-23 110.9 79 67.1
AT5G28820 Arabidopsis thaliana HOM05D001678 ORTHO05D001698 1.1e-22 110.5 140 47.9
Carub.0004s0707 Capsella rubella HOM05D001678 ORTHO05D001698 1.8e-22 109.8 109 58.7
C05p30510 Brassica napus HOM05D001678 ORTHO05D032997 2.4e-22 109.4 106 55.7
BraA01t03239Z Brassica rapa HOM05D001678 ORTHO05D001698 2.4e-22 109.4 191 35.1
A08p16470 Brassica napus HOM05D001678 ORTHO05D001698 9.1e-22 107.5 200 36.0
A09p37990 Brassica napus HOM05D001678 ORTHO05D001698 2.0e-21 106.3 190 34.2
BraA09t39310Z Brassica rapa HOM05D001678 ORTHO05D001698 2.0e-21 106.3 190 34.2
BcaC03g17938 Brassica carinata HOM05D001678 ORTHO05D001698 2.7e-21 105.9 92 60.9
Thhalv10005278m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 3.5e-21 105.5 187 34.8
C09p07340 Brassica napus HOM05D001678 ORTHO05D001698 4.5e-21 105.1 142 40.1
BcaC01g04115 Brassica carinata HOM05D001678 ORTHO05D001698 5.9e-21 104.8 183 35.5
AT2G29880 Arabidopsis thaliana HOM05D001678 ORTHO05D001698 7.7e-21 104.4 186 34.9
BcaC04g21001 Brassica carinata HOM05D001678 ORTHO05D001698 7.7e-21 104.4 198 35.4
BolC3t20376H Brassica oleracea HOM05D001678 ORTHO05D001698 7.7e-21 104.4 191 34.6
Thhalv10029423m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 7.7e-21 104.4 187 34.8
BraA10t43304Z Brassica rapa HOM05D001678 ORTHO05D001698 1.0e-20 104.0 171 35.7
BcaC09g49863 Brassica carinata HOM05D001678 ORTHO05D001698 1.7e-20 103.2 184 34.8
Carub.0006s3595 Capsella rubella HOM05D001678 ORTHO05D001698 4.2e-19 98.6 205 30.7
Carub.0008s1510 Capsella rubella HOM05D001678 ORTHO05D001698 4.2e-19 98.6 205 30.7
Thhalv10022272m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 7.2e-19 97.8 191 31.9
Carub.0011s0001 Capsella rubella HOM05D001678 ORTHO05D001698 2.8e-18 95.9 212 31.1
A10p12020 Brassica napus HOM05D001678 ORTHO05D001698 3.6e-18 95.5 165 34.5
AL1G56710 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 8.0e-18 94.4 216 29.6
C09p36790 Brassica napus HOM05D001678 ORTHO05D001698 1.0e-17 94.0 191 34.6
AT5G27260 Arabidopsis thaliana HOM05D001678 ORTHO05D001698 1.4e-17 93.6 186 33.9
BolC3t21566H Brassica oleracea HOM05D001678 ORTHO05D001698 2.3e-17 92.8 184 34.2
BraA04t16704Z Brassica rapa HOM05D001678 ORTHO05D001698 5.2e-17 91.7 188 34.6
BraA05t21006Z Brassica rapa HOM05D001678 ORTHO05D001698 5.2e-17 91.7 188 34.6
BolC9t56511H Brassica oleracea HOM05D001678 ORTHO05D001698 1.2e-16 90.5 188 34.0
Thhalv10029159m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 1.2e-16 90.5 188 30.9
BcaNung00414 Brassica carinata HOM05D001678 ORTHO05D001698 3.4e-16 89.0 177 33.3
Sp6g02750 Schrenkiella parvula HOM05D001678 ORTHO05D001698 5.7e-16 88.2 215 31.2
BcaB08g36227 Brassica carinata HOM05D001678 ORTHO05D001698 1.7e-15 86.7 79 50.6
A05p21020 Brassica napus HOM05D001678 ORTHO05D001698 2.2e-15 86.3 124 41.9
Thhalv10023821m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 4.9e-15 85.1 101 45.5
Thhalv10027019m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 6.3e-15 84.7 120 37.5
A09p28080 Brassica napus HOM05D001678 ORTHO05D001698 1.1e-14 84.0 163 34.4
MD03G1206200 Malus domestica HOM05D001678 ORTHO05D001698 2.4e-14 82.8 216 26.9
AL1G65820 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 2.3e-12 76.3 101 41.6
Carub.0001s3536 Capsella rubella HOM05D001678 ORTHO05D001698 2.3e-12 76.3 154 33.1
A03p43320 Brassica napus HOM05D001678 ORTHO05D001698 2.9e-12 75.9 152 30.9
BolC1t03674H Brassica oleracea HOM05D001678 ORTHO05D001698 2.9e-12 75.9 151 27.8
Thhalv10002177m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 2.9e-12 75.9 185 31.4
BolC2t11022H Brassica oleracea HOM05D001678 ORTHO05D001698 5.0e-12 75.1 164 34.8
C01p37100 Brassica napus HOM05D001678 ORTHO05D001698 6.6e-12 74.7 151 27.8
MD06G1083900 Malus domestica HOM05D001678 ORTHO05D001698 1.5e-11 73.6 208 27.4
Oeu039328.1 Olea europaea HOM05D001678 ORTHO05D001698 1.9e-11 73.2 185 28.6
A01p29340 Brassica napus HOM05D001678 ORTHO05D001698 7.3e-11 71.2 172 27.3
BraA01t03066Z Brassica rapa HOM05D001678 ORTHO05D001698 7.3e-11 71.2 172 27.3
Thhalv10029209m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 9.5e-11 70.9 109 34.9
BolC1t03676H Brassica oleracea HOM05D001678 ORTHO05D001698 1.2e-10 70.5 172 27.3
Thhalv10010996m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 1.2e-10 70.5 137 29.2
CARHR052440 Cardamine hirsuta HOM05D001678 ORTHO05D001698 1.6e-10 70.1 183 29.5
Prupe.1G229800 Prunus persica HOM05D001678 ORTHO05D001698 2.1e-10 69.7 118 39.0
Prupe.6G020000 Prunus persica HOM05D001678 ORTHO05D001698 3.6e-10 68.9 120 35.8
C01p37120 Brassica napus HOM05D001678 ORTHO05D001698 4.7e-10 68.6 172 26.7
C03p69150 Brassica napus HOM05D001678 ORTHO05D001698 6.1e-10 68.2 122 38.5
BolC3t19168H Brassica oleracea HOM05D001678 ORTHO05D001698 6.1e-10 68.2 122 38.5
Thhalv10029365m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 6.1e-10 68.2 154 31.8
Carub.0004s0720 Capsella rubella HOM05D001678 ORTHO05D001698 2.3e-09 66.2 163 28.2
A01p29330 Brassica napus HOM05D001678 ORTHO05D001698 3.1e-09 65.9 178 24.7
BraA01t03065Z Brassica rapa HOM05D001678 ORTHO05D001698 3.1e-09 65.9 178 24.7
AL2G16050 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 6.8e-09 64.7 174 28.7
Lj2A433T12 Lonicera japonica HOM05D001678 ORTHO05D001698 6.8e-09 64.7 166 30.1
Sp2g04200 Schrenkiella parvula HOM05D001678 ORTHO05D001698 6.8e-09 64.7 177 25.4
Lj1A169T8 Lonicera japonica HOM05D001678 ORTHO05D001698 8.9e-09 64.3 151 29.8
Prupe.1G177900 Prunus persica HOM05D001678 ORTHO05D001698 8.9e-09 64.3 168 29.8
BcaB05g23433 Brassica carinata HOM05D001678 ORTHO05D001698 1.5e-08 63.5 154 30.5
Prupe.2G168600 Prunus persica HOM05D001678 ORTHO05D001698 2.6e-08 62.8 131 34.4
SalBow1G8139 Salvia bowleyana HOM05D001678 ORTHO05D001698 2.6e-08 62.8 77 39.0
SalBow1G8112 Salvia bowleyana HOM05D001678 ORTHO05D001698 1.3e-07 60.5 59 44.1
FAN14G3339 Fragaria x ananassa HOM05D001678 ORTHO05D001698 1.7e-07 60.1 84 34.5
Thhalv10017633m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 2.2e-07 59.7 172 27.3
FvH4_6g20420 Fragaria vesca HOM05D000034 ORTHO05D001698 2.9e-07 59.3 77 35.1
C02p14410 Brassica napus HOM05D001678 ORTHO05D001698 3.7e-07 58.9 183 27.3
BolC2t07565H Brassica oleracea HOM05D001678 ORTHO05D001698 3.7e-07 58.9 183 27.3
A07p20440 Brassica napus HOM05D001678 ORTHO05D001698 4.9e-07 58.5 33 78.8
AT5G35540 Arabidopsis thaliana HOM05D001678 ORTHO05D001698 6.4e-07 58.2 146 32.2
FAN13G1605 Fragaria x ananassa HOM05D001678 ORTHO05D001698 8.3e-07 57.8 84 33.3
SalBow7G3019 Salvia bowleyana HOM05D010254 ORTHO05D015184 1.1e-06 57.4 83 37.3
Sp1g32750 Schrenkiella parvula HOM05D000034 ORTHO05D000037 1.1e-06 57.4 69 42.0
FAN26G1383 Fragaria x ananassa HOM05D001678 ORTHO05D001698 1.4e-06 57.0 56 44.6
RcHm_v2.0_Chr3g0476481 Rosa chinensis HOM05D001678 ORTHO05D001698 1.4e-06 57.0 203 25.1
Carub.0001s3425 Capsella rubella HOM05D001678 ORTHO05D001698 1.9e-06 56.6 125 34.4
AL8G38260 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 2.4e-06 56.2 36 69.4
BolC9t53596H Brassica oleracea HOM05D001678 ORTHO05D001698 2.4e-06 56.2 151 29.1
Lj3C1037T5 Lonicera japonica HOM05D001678 ORTHO05D001698 2.4e-06 56.2 200 24.5
DCAR_003999 Daucus carota HOM05D001678 ORTHO05D001698 3.2e-06 55.8 184 25.0
DCAR_002869 Daucus carota HOM05D001678 ORTHO05D001698 5.4e-06 55.1 197 22.8
Lj6A398T11 Lonicera japonica HOM05D001678 ORTHO05D001698 5.4e-06 55.1 201 23.9
Medtr1g106600 Medicago truncatula HOM05D001678 ORTHO05D001698 5.4e-06 55.1 79 43.0
Medtr1g106608 Medicago truncatula HOM05D001678 ORTHO05D001698 5.4e-06 55.1 79 43.0
Medtr6g018520 Medicago truncatula HOM05D001678 ORTHO05D001698 5.4e-06 55.1 79 43.0
Medtr6g025650 Medicago truncatula HOM05D001678 ORTHO05D001698 5.4e-06 55.1 79 43.0


User provided reference genes

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