Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 1.4e-190 669.5 343 100.0
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 4.1e-190 667.9 343 99.7
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 4.5e-189 664.5 343 99.1
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 6.5e-188 660.6 343 99.1
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 2.1e-186 655.6 343 98.3
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 3.5e-181 638.3 343 95.3
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 3.3e-179 631.7 343 93.3
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 1.7e-172 609.4 327 95.4
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 1.7e-172 609.4 343 90.7
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 2.3e-172 609.0 345 90.7
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 3.3e-171 605.1 345 90.4
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 5.6e-171 604.4 345 90.4
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 2.0e-165 585.9 342 88.0
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 2.6e-152 542.3 344 81.1
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 5.2e-145 518.1 339 77.9
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 8.7e-140 500.7 340 74.1
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 2.1e-138 496.1 299 81.6
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 3.6e-138 495.4 304 80.6
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 8.1e-138 494.2 330 76.4
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 6.9e-137 491.1 303 79.2
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 1.2e-136 490.3 339 73.7
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 1.2e-136 490.3 304 80.3
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 1.5e-136 490.0 339 74.3
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 2.0e-136 489.6 276 87.0
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 2.0e-136 489.6 296 81.4
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 2.0e-136 489.6 294 82.0
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 2.6e-136 489.2 302 79.1
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 4.4e-136 488.4 319 77.4
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 4.4e-136 488.4 304 79.6
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 5.8e-136 488.0 291 82.1
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 7.6e-136 487.6 307 79.8
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 7.6e-136 487.6 304 79.3
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 7.6e-136 487.6 318 77.4
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 7.6e-136 487.6 294 82.3
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 1.3e-135 486.9 294 82.0
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.2e-135 486.1 284 83.5
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 2.9e-135 485.7 302 80.8
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 2.9e-135 485.7 302 79.5
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 3.8e-135 485.3 311 78.5
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 4.9e-135 485.0 310 78.4
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 8.4e-135 484.2 312 78.5
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 1.4e-134 483.4 329 75.7
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.4e-134 483.4 296 78.7
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 1.4e-134 483.4 307 78.8
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 1.9e-134 483.0 304 80.3
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 1.9e-134 483.0 300 80.0
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 2.4e-134 482.6 284 83.5
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 2.4e-134 482.6 296 78.4
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 3.2e-134 482.3 330 73.6
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 4.2e-134 481.9 294 81.3
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 4.2e-134 481.9 294 81.3
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 9.3e-134 480.7 313 78.9
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 9.3e-134 480.7 279 84.9
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 1.2e-133 480.3 302 77.8
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 1.2e-133 480.3 301 78.7
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 1.2e-133 480.3 310 77.7
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 2.1e-133 479.6 318 76.7
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 2.1e-133 479.6 305 77.7
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 3.5e-133 478.8 309 77.0
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 3.5e-133 478.8 297 78.1
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 4.6e-133 478.4 338 73.4
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 4.6e-133 478.4 308 80.2
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 6.0e-133 478.0 303 78.9
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 3.9e-132 475.3 313 75.7
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 3.9e-132 475.3 291 78.7
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 1.5e-131 473.4 301 77.7
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 1.5e-131 473.4 297 78.5
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 1.5e-131 473.4 323 74.9
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 1.9e-131 473.0 301 78.7
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 2.5e-131 472.6 333 72.1
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 5.6e-131 471.5 296 79.4
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 9.6e-131 470.7 278 81.7
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 1.3e-130 470.3 304 78.3
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 1.3e-130 470.3 286 81.5
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 2.4e-129 466.1 294 76.9
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 4.0e-129 465.3 294 77.2
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 4.0e-129 465.3 304 77.3
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 9.0e-129 464.2 307 73.9
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 2.6e-128 462.6 284 78.9
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 2.6e-128 462.6 305 76.4
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 1.1e-126 457.2 285 79.6
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 3.5e-125 452.2 289 76.5
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 1.0e-124 450.7 290 77.2
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 8.7e-124 447.6 273 79.1
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 1.5e-123 446.8 289 77.2
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 1.9e-123 446.4 265 81.5
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 1.4e-121 440.3 333 68.8
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 7.6e-120 434.5 319 67.4
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 7.6e-120 434.5 295 74.9
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 9.9e-120 434.1 255 88.6
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 4.9e-119 431.8 288 74.3
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 6.4e-119 431.4 293 76.8
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 6.4e-119 431.4 350 65.1
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.6e-117 426.8 262 79.4
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 4.3e-107 392.1 323 63.8
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.6e-106 390.2 273 73.3
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 1.5e-104 383.6 211 89.6
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 3.8e-103 379.0 237 80.2
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 4.2e-102 375.6 250 73.6
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.0e-100 370.9 235 78.7
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 9.7e-99 364.4 235 76.2
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 6.9e-97 358.2 267 64.0
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.3e-95 354.0 244 74.6
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 1.1e-94 350.9 249 73.5
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 2.1e-93 346.7 258 64.0
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.6e-91 339.7 216 78.2
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 4.4e-91 339.0 204 77.9
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 1.3e-90 337.4 212 76.9
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 5.3e-89 332.0 224 75.4
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.2e-80 304.3 265 61.9
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 1.4e-76 290.8 263 53.2
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 2.5e-70 270.0 159 82.4
CDE05G1086 Ceratophyllum demersum HOM05D001132 ORTHO05D002510 4.2e-70 269.2 176 75.0
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 9.5e-62 241.5 207 60.9
Migut.K01251 Erythranthe guttata HOM05D005629 ORTHO05D008000 7.8e-56 221.9 159 71.1
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 6.1e-53 212.2 313 40.3
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 2.6e-51 206.8 288 43.4
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 5.8e-51 205.7 120 82.5
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 8.3e-50 201.8 121 81.0
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 7.8e-48 195.3 118 79.7
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 1.0e-47 194.9 116 82.8
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 4.3e-46 189.5 128 74.2
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 5.6e-46 189.1 223 48.4
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 8.9e-36 155.2 327 35.2
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 7.1e-33 145.6 231 40.7
FAN02G3684 Fragaria x ananassa HOM05D005629 ORTHO05D008000 4.6e-32 142.9 78 87.2
arahy.Tifrunner.gnm1.ann1.0H9GWB Arachis hypogaea HOM05D005629 ORTHO05D008000 1.1e-28 131.7 76 84.2
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 4.4e-27 126.3 288 33.7
MELO3C032122.2 Cucumis melo HOM05D005629 ORTHO05D008000 5.8e-27 125.9 63 92.1
Zm00001eb048250 Zea mays HOM05D005629 ORTHO05D008000 1.6e-24 117.9 73 74.0
Lsat_1_v5_gn_0_46360 Lactuca sativa HOM05D005629 ORTHO05D008000 6.0e-24 115.9 83 69.9
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 1.1e-22 111.7 273 31.5
A02p35090 Brassica napus HOM05D005629 ORTHO05D008000 1.1e-20 105.1 81 69.1
BraA02t08515Z Brassica rapa HOM05D005629 ORTHO05D008000 3.4e-19 100.1 75 70.7
FAN02G2357 Fragaria x ananassa HOM05D005629 ORTHO05D008000 3.4e-19 100.1 103 50.5
FvH4_6g53460 Fragaria vesca HOM05D005629 ORTHO05D022663 6.2e-13 79.3 172 34.9
BolC2t11443H Brassica oleracea HOM05D005629 ORTHO05D008000 3.4e-11 73.6 53 73.6
CAN.G792.7 Capsicum annuum HOM05D002518 ORTHO05D002630 1.9e-09 67.8 47 72.3
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 1.9e-06 57.8 59 54.2
FvH4_6g53450 Fragaria vesca HOM05D005629 ORTHO05D008000 4.3e-06 56.6 47 59.6


User provided reference genes

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