Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33722 Brassica carinata HOM05D001999 ORTHO05D001994 7.8e-39 163.3 82 100.0
BcaC07g40784 Brassica carinata HOM05D001999 ORTHO05D001994 2.4e-35 151.8 82 95.1
C07p38590 Brassica napus HOM05D001999 ORTHO05D001994 4.6e-31 137.5 69 100.0
BolC7t44380H Brassica oleracea HOM05D001999 ORTHO05D001994 4.6e-31 137.5 69 100.0
BcaC05g25970 Brassica carinata HOM05D001999 ORTHO05D001994 7.3e-29 130.2 69 97.1
C05p19250 Brassica napus HOM05D001999 ORTHO05D001994 7.3e-29 130.2 69 97.1
BolC5t30625H Brassica oleracea HOM05D001999 ORTHO05D001994 7.3e-29 130.2 69 97.1
C08p37750 Brassica napus HOM05D001999 ORTHO05D001994 8.1e-28 126.7 70 92.9
BcaB02g08752 Brassica carinata HOM05D001999 ORTHO05D001994 4.9e-25 117.5 69 87.0
A05p00260 Brassica napus HOM05D001999 ORTHO05D001994 1.4e-24 115.9 71 88.7
BraA05t19023Z Brassica rapa HOM05D001999 ORTHO05D001994 1.4e-24 115.9 71 88.7
BcaC02g12548 Brassica carinata HOM05D001999 ORTHO05D001994 1.1e-21 106.3 70 82.9
C04p00170 Brassica napus HOM05D001999 ORTHO05D001994 2.8e-20 101.7 71 81.7
Sp4g29640 Schrenkiella parvula HOM05D001999 ORTHO05D001994 6.2e-20 100.5 67 77.6
BolC4t21664H Brassica oleracea HOM05D001999 ORTHO05D001994 1.5e-18 95.9 70 78.6
Thhalv10001505m.g Eutrema salsugineum HOM05D001999 ORTHO05D001994 6.0e-15 84.0 62 69.4
AL4G47270 Arabidopsis lyrata HOM05D001999 ORTHO05D001994 3.3e-13 78.2 70 65.7
AT2G47700 Arabidopsis thaliana HOM05D001999 ORTHO05D001994 1.1e-11 73.2 44 79.5
Carub.0004s3042 Capsella rubella HOM05D001999 ORTHO05D001994 1.8e-11 72.4 66 62.1
THA.LOC104817500 Tarenaya hassleriana HOM05D001999 ORTHO05D001994 5.8e-10 67.4 64 59.4
Aa31LG1G29020 Aethionema arabicum HOM05D001999 ORTHO05D001994 1.3e-09 66.2 52 65.4
Psat0s1830g0240 Pisum sativum HOM05D001999 ORTHO05D001994 4.2e-08 61.2 39 71.8
Thecc.05G313600 Theobroma cacao HOM05D001999 ORTHO05D001994 7.1e-08 60.5 42 66.7
Duzib177G1061 Durio zibethinus HOM05D001999 ORTHO05D001994 9.3e-08 60.1 40 70.0
HanXRQChr11g0339901 Helianthus annuus HOM05D001999 ORTHO05D001994 9.3e-08 60.1 42 61.9
Duzib133G0338 Durio zibethinus HOM05D001999 ORTHO05D001994 1.2e-07 59.7 42 61.9
Gorai.007G300400 Gossypium raimondii HOM05D001999 ORTHO05D001994 2.7e-07 58.5 40 67.5
Rhsim13G0010900 Rhododendron simsii HOM05D001999 ORTHO05D001994 2.7e-07 58.5 39 64.1
FAN09G2669 Fragaria x ananassa HOM05D001999 ORTHO05D001994 3.5e-07 58.2 42 64.3
vmacro15001 Vaccinium macrocarpon HOM05D001999 ORTHO05D001994 3.5e-07 58.2 42 64.3
Sabra13G0013900 Salix brachista HOM05D000092 ORTHO05D000042 4.6e-07 57.8 31 77.4
Sabra13G0019100 Salix brachista HOM05D001999 ORTHO05D001994 4.6e-07 57.8 31 77.4
Cpa.g.sc327.4 Carica papaya HOM05D001999 ORTHO05D001994 6.1e-07 57.4 40 67.5
Gohir.A11G268300 Gossypium hirsutum HOM05D001999 ORTHO05D001994 6.1e-07 57.4 40 67.5
Gohir.D11G278200 Gossypium hirsutum HOM05D001999 ORTHO05D001994 6.1e-07 57.4 40 67.5
Lj9C146G5 Lonicera japonica HOM05D001999 ORTHO05D001994 6.1e-07 57.4 30 80.0
Manes.09G170900 Manihot esculenta HOM05D001999 ORTHO05D001994 6.1e-07 57.4 42 61.9
vmacro02456 Vaccinium macrocarpon HOM05D001999 ORTHO05D001994 6.1e-07 57.4 39 61.5
Actinidia35557 Actinidia chinensis HOM05D001999 ORTHO05D001994 7.9e-07 57.0 45 62.2
ClCG03G017310 Citrullus lanatus HOM05D001999 ORTHO05D001994 7.9e-07 57.0 42 59.5
MELO3C015298.2 Cucumis melo HOM05D001999 ORTHO05D001994 7.9e-07 57.0 42 59.5
PGR031G0021 Punica granatum HOM05D001999 ORTHO05D001994 7.9e-07 57.0 49 59.2
Hund07102 Selenicereus undatus HOM05D001999 ORTHO05D001994 7.9e-07 57.0 59 54.2
THA.LOC104802795 Tarenaya hassleriana HOM05D001999 ORTHO05D001994 7.9e-07 57.0 60 48.3
Ciclev10001227m.g Citrus clementina HOM05D001999 ORTHO05D001994 1.0e-06 56.6 49 61.2
Duzib211G0185 Durio zibethinus HOM05D001999 ORTHO05D001994 1.0e-06 56.6 42 61.9
FvH4_6g06620 Fragaria vesca HOM05D001999 ORTHO05D001994 1.0e-06 56.6 42 61.9
Manes.08G117000 Manihot esculenta HOM05D001999 ORTHO05D001994 1.0e-06 56.6 33 72.7
Prupe.6G320100 Prunus persica HOM05D001999 ORTHO05D001994 1.0e-06 56.6 42 61.9
Solyc01g099790.3 Solanum lycopersicum HOM05D001999 ORTHO05D001994 1.0e-06 56.6 39 69.2
Sopen01g043310 Solanum pennellii HOM05D001999 ORTHO05D001994 1.0e-06 56.6 39 69.2
EL10Ac4g09908 Beta vulgaris HOM05D001999 ORTHO05D001994 1.3e-06 56.2 49 53.1
Gorai.013G205600 Gossypium raimondii HOM05D001999 ORTHO05D001994 1.3e-06 56.2 49 59.2
Peaxi162Scf00037g01221 Petunia axillaris HOM05D001999 ORTHO05D001994 1.3e-06 56.2 49 59.2
Rhsim01G0284400 Rhododendron simsii HOM05D001999 ORTHO05D001994 1.3e-06 56.2 42 59.5
Actinidia19777 Actinidia chinensis HOM05D001999 ORTHO05D001994 1.8e-06 55.8 37 64.9
CiPaw.07G107800 Carya illinoinensis HOM05D001999 ORTHO05D001994 1.8e-06 55.8 29 79.3
Duzib128G0926 Durio zibethinus HOM05D001999 ORTHO05D001994 1.8e-06 55.8 65 50.8
FAN14G1734 Fragaria x ananassa HOM05D001999 ORTHO05D001994 1.8e-06 55.8 44 61.4
Medtr1g083390 Medicago truncatula HOM05D001999 ORTHO05D001994 1.8e-06 55.8 41 63.4
PGSC0003DMG400024717 Solanum tuberosum HOM05D001999 ORTHO05D001994 1.8e-06 55.8 39 69.2
TAR622G0837 Trochodendron aralioides HOM05D001999 ORTHO05D001994 1.8e-06 55.8 29 79.3
arahy.Tifrunner.gnm1.ann1.5G7CV2 Arachis hypogaea HOM05D001999 ORTHO05D001994 2.3e-06 55.5 45 55.6
arahy.Tifrunner.gnm1.ann1.XS7LB4 Arachis hypogaea HOM05D001999 ORTHO05D001994 2.3e-06 55.5 45 55.6
Lj5A391T59 Lonicera japonica HOM05D001999 ORTHO05D001994 2.3e-06 55.5 39 56.4
Lj5A396T57 Lonicera japonica HOM05D001999 ORTHO05D001994 2.3e-06 55.5 39 56.4
TPR.G17700 Trifolium pratense HOM05D001999 ORTHO05D001994 2.3e-06 55.5 49 55.1
Cfa006634 Carpinus fangiana HOM05D001999 ORTHO05D001994 3.0e-06 55.1 29 79.3
Haze_04134 Corylus avellana HOM05D001999 ORTHO05D001994 3.0e-06 55.1 29 79.3
Psat0s1500g0040 Pisum sativum HOM05D001999 ORTHO05D001994 3.0e-06 55.1 63 44.4
Potri.005G024700 Populus trichocarpa HOM05D001999 ORTHO05D001994 3.0e-06 55.1 29 79.3
Potri.013G015600 Populus trichocarpa HOM05D001999 ORTHO05D001994 3.0e-06 55.1 29 79.3
QL03p020135 Quercus lobata HOM05D001999 ORTHO05D001994 3.0e-06 55.1 29 79.3
Sabra05G0030100 Salix brachista HOM05D001999 ORTHO05D001994 3.0e-06 55.1 29 79.3
Sabra13G0013700 Salix brachista HOM05D001999 ORTHO05D001994 3.0e-06 55.1 29 79.3
Sabra13G0015200 Salix brachista HOM05D000070 ORTHO05D001994 3.0e-06 55.1 29 79.3
TAR633G2461 Trochodendron aralioides HOM05D001999 ORTHO05D001994 3.0e-06 55.1 29 79.3
GSVIVG01031134001 Vitis vinifera HOM05D001999 ORTHO05D001994 3.0e-06 55.1 39 61.5
AUR62000756 Chenopodium quinoa HOM05D001999 ORTHO05D001994 3.9e-06 54.7 50 58.0
ECA236G3557 Erigeron canadensis HOM05D001999 ORTHO05D001994 3.9e-06 54.7 29 79.3
Gohir.A13G174400 Gossypium hirsutum HOM05D001999 ORTHO05D001994 3.9e-06 54.7 33 72.7
Gohir.D13G180200 Gossypium hirsutum HOM05D001999 ORTHO05D001994 3.9e-06 54.7 33 72.7
Nitab4.5_0010216g0020 Nicotiana tabacum HOM05D001999 ORTHO05D001994 3.9e-06 54.7 49 59.2
Oeu043342.1 Olea europaea HOM05D001999 ORTHO05D001994 3.9e-06 54.7 29 79.3
Phvul.007G197300 Phaseolus vulgaris HOM05D001999 ORTHO05D001994 3.9e-06 54.7 42 64.3
Thecc.01G299000 Theobroma cacao HOM05D001999 ORTHO05D001994 3.9e-06 54.7 44 54.5
GSVIVG01028007001 Vitis vinifera HOM05D001999 ORTHO05D001994 3.9e-06 54.7 29 75.9
Cc02_g34200 Coffea canephora HOM05D001999 ORTHO05D001994 5.1e-06 54.3 33 69.7
Glyma.10G151500 Glycine max HOM05D001999 ORTHO05D001994 5.1e-06 54.3 33 69.7
Glyma.20G236700 Glycine max HOM05D001999 ORTHO05D001994 5.1e-06 54.3 33 69.7
HanXRQChr05g0136211 Helianthus annuus HOM05D001999 ORTHO05D001994 5.1e-06 54.3 42 61.9
MD04G1199600 Malus domestica HOM05D001999 ORTHO05D001994 5.1e-06 54.3 29 79.3
Oeu010920.1 Olea europaea HOM05D001999 ORTHO05D001994 5.1e-06 54.3 29 79.3
Sabra13G0017800 Salix brachista HOM05D001999 ORTHO05D001994 5.1e-06 54.3 29 79.3
TWI36G1062 Tripterygium wilfordii HOM05D001999 ORTHO05D001994 5.1e-06 54.3 45 57.8
HPP92_028335 Vanilla planifolia HOM05D001999 ORTHO05D001994 5.1e-06 54.3 37 64.9
ATR0582G131 Amborella trichopoda HOM05D001999 ORTHO05D001994 6.7e-06 53.9 39 61.5
BcaB04g19258 Brassica carinata HOM05D001999 ORTHO05D001994 6.7e-06 53.9 45 51.1
BcaC05g30158 Brassica carinata HOM05D001999 ORTHO05D001994 6.7e-06 53.9 50 50.0
CSS0046081 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 6.7e-06 53.9 46 56.5
CANSAT25G1967 Cannabis sativa HOM05D001999 ORTHO05D001994 6.7e-06 53.9 30 73.3
CANSAT25G3193 Cannabis sativa HOM05D001999 ORTHO05D001994 6.7e-06 53.9 30 73.3
CiPaw.07G022200 Carya illinoinensis HOM05D001999 ORTHO05D001994 6.7e-06 53.9 49 55.1
DCAR_022142 Daucus carota HOM05D001999 ORTHO05D001994 6.7e-06 53.9 39 53.8
FAN02G3011 Fragaria x ananassa HOM05D001999 ORTHO05D001994 6.7e-06 53.9 29 75.9
FAN05G1277 Fragaria x ananassa HOM05D001999 ORTHO05D001994 6.7e-06 53.9 40 60.0
Lsat_1_v5_gn_7_72040 Lactuca sativa HOM05D001999 ORTHO05D001994 6.7e-06 53.9 31 71.0
Lalb_Chr21g0310571 Lupinus albus HOM05D001999 ORTHO05D001994 6.7e-06 53.9 49 53.1
MD12G1212400 Malus domestica HOM05D001999 ORTHO05D001994 6.7e-06 53.9 59 45.8
Rhsim05G0138600 Rhododendron simsii HOM05D001999 ORTHO05D001994 6.7e-06 53.9 45 60.0
RcHm_v2.0_Chr3g0455821 Rosa chinensis HOM05D001999 ORTHO05D001994 6.7e-06 53.9 29 75.9
Hund21714 Selenicereus undatus HOM05D001999 ORTHO05D001994 6.7e-06 53.9 49 53.1
CSS0032431 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 8.7e-06 53.5 29 72.4
Duzib138G0033 Durio zibethinus HOM05D001999 ORTHO05D001994 8.7e-06 53.5 42 59.5
Migut.N02088 Erythranthe guttata HOM05D001999 ORTHO05D001994 8.7e-06 53.5 29 79.3
Glyma.19G232800 Glycine max HOM05D001999 ORTHO05D001994 8.7e-06 53.5 44 59.1
SGA_v2.0_scaffold586G53057 Striga asiatica HOM05D001999 ORTHO05D001994 8.7e-06 53.5 42 59.5
TAR362G0062 Trochodendron aralioides HOM05D001999 ORTHO05D001994 8.7e-06 53.5 42 57.1


User provided reference genes

Program Settings