Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33591 Brassica carinata HOM05D006814 ORTHO05D008613 2.3e-173 612.1 298 100.0
BolC7t45420H Brassica oleracea HOM05D006814 ORTHO05D008613 2.3e-173 612.1 298 100.0
BcaNung04035 Brassica carinata HOM05D006814 ORTHO05D008613 4.4e-172 607.8 298 99.3
BraA03t14161Z Brassica rapa HOM05D006814 ORTHO05D008613 2.8e-171 605.1 298 98.7
A03p50690 Brassica napus HOM05D006814 ORTHO05D008613 3.7e-171 604.7 298 98.7
C07p49120 Brassica napus HOM05D006814 ORTHO05D008613 3.5e-169 598.2 323 92.3
Thhalv10025847m.g Eutrema salsugineum HOM05D006814 ORTHO05D008613 8.0e-166 587.0 295 96.3
Sp7g16350 Schrenkiella parvula HOM05D006814 ORTHO05D008613 2.3e-165 585.5 297 95.3
AL7G36810 Arabidopsis lyrata HOM05D006814 ORTHO05D008613 3.0e-165 585.1 296 94.9
CARHR224480 Cardamine hirsuta HOM05D006814 ORTHO05D008613 3.0e-165 585.1 297 94.9
Carub.0007s2360 Capsella rubella HOM05D006814 ORTHO05D008613 9.8e-164 580.1 295 94.2
Aa31LG6G500 Aethionema arabicum HOM05D006814 ORTHO05D008613 1.7e-160 569.3 295 91.2
Aa31LG9G8590 Aethionema arabicum HOM05D006814 ORTHO05D008613 2.8e-150 535.4 295 86.4
THA.LOC104798334 Tarenaya hassleriana HOM05D006814 ORTHO05D008613 3.0e-149 531.9 295 85.1
CANSAT21G0682 Cannabis sativa HOM05D006814 ORTHO05D008613 8.9e-141 503.8 292 81.2
CSS0047525 Camellia sinensis var. sinensis HOM05D006814 ORTHO05D008613 1.7e-139 499.6 295 80.7
Cpa.g.sc87.105 Carica papaya HOM05D006814 ORTHO05D008613 2.2e-139 499.2 294 79.6
Hma1.2p1_0586F.1_g183880 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 2.9e-139 498.8 295 80.0
Thecc.03G307100 Theobroma cacao HOM05D006814 ORTHO05D008613 3.2e-138 495.4 294 79.3
CiPaw.11G096600 Carya illinoinensis HOM05D006814 ORTHO05D008613 5.4e-138 494.6 295 79.0
Cc08_g03190 Coffea canephora HOM05D006814 ORTHO05D008613 5.4e-138 494.6 296 80.7
CiPaw.11G097800 Carya illinoinensis HOM05D006814 ORTHO05D008613 7.0e-138 494.2 295 79.0
Gohir.A08G154800 Gossypium hirsutum HOM05D006814 ORTHO05D008613 2.7e-137 492.3 294 77.2
Rhsim11G0018900 Rhododendron simsii HOM05D006814 ORTHO05D008613 4.6e-137 491.5 297 78.8
Duzib205G0392 Durio zibethinus HOM05D006814 ORTHO05D008613 1.3e-136 490.0 294 77.2
Potri.001G139100 Populus trichocarpa HOM05D006814 ORTHO05D008613 1.7e-136 489.6 295 78.6
Gohir.D08G175300 Gossypium hirsutum HOM05D006814 ORTHO05D008613 2.3e-136 489.2 294 76.9
MD11G1183600 Malus domestica HOM05D006814 ORTHO05D008613 2.3e-136 489.2 297 78.1
Cfa012484 Carpinus fangiana HOM05D006814 ORTHO05D008613 3.0e-136 488.8 295 78.3
Ciclev10032236m.g Citrus clementina HOM05D006814 ORTHO05D008613 3.0e-136 488.8 295 76.6
Hund14354 Selenicereus undatus HOM05D006814 ORTHO05D008613 3.0e-136 488.8 293 76.5
Manes.02G107600 Manihot esculenta HOM05D006814 ORTHO05D008613 3.9e-136 488.4 295 78.3
Gorai.004G183200 Gossypium raimondii HOM05D006814 ORTHO05D008613 6.6e-136 487.6 294 76.9
Sabra01G0108000 Salix brachista HOM05D006814 ORTHO05D008613 8.6e-136 487.3 295 78.3
Nitab4.5_0000685g0010 Nicotiana tabacum HOM05D006814 ORTHO05D008613 1.9e-135 486.1 294 78.9
Nn1g02991 Nelumbo nucifera HOM05D006814 ORTHO05D008613 3.3e-135 485.3 295 77.3
RcHm_v2.0_Chr7g0211071 Rosa chinensis HOM05D006814 ORTHO05D008613 3.3e-135 485.3 299 76.9
GSVIVG01013112001 Vitis vinifera HOM05D006814 ORTHO05D008613 3.3e-135 485.3 291 78.7
TWI60G0232 Tripterygium wilfordii HOM05D006814 ORTHO05D008613 5.6e-135 484.6 297 76.4
ClCG04G005520 Citrullus lanatus HOM05D006814 ORTHO05D008613 9.5e-135 483.8 314 74.2
Peaxi162Scf00170g01111 Petunia axillaris HOM05D006814 ORTHO05D008613 9.5e-135 483.8 294 77.6
MELO3C008839.2 Cucumis melo HOM05D006814 ORTHO05D008613 1.6e-134 483.0 295 76.9
Atru.chr6.1626 Acer truncatum HOM05D006814 ORTHO05D008613 2.1e-134 482.6 295 76.9
Actinidia03355 Actinidia chinensis HOM05D006814 ORTHO05D008613 2.1e-134 482.6 295 78.3
FAN04G0609 Fragaria x ananassa HOM05D006814 ORTHO05D008613 2.8e-134 482.3 296 76.4
FAN08G0276 Fragaria x ananassa HOM05D006814 ORTHO05D008613 2.8e-134 482.3 296 76.4
FAN18G2202 Fragaria x ananassa HOM05D006814 ORTHO05D008613 3.6e-134 481.9 296 76.4
TAR629G1931 Trochodendron aralioides HOM05D006814 ORTHO05D008613 3.6e-134 481.9 295 76.9
AUR62007326 Chenopodium quinoa HOM05D006814 ORTHO05D008613 6.2e-134 481.1 284 78.2
FvH4_5g22650 Fragaria vesca HOM05D006814 ORTHO05D008613 8.1e-134 480.7 296 76.0
PGSC0003DMG400014801 Solanum tuberosum HOM05D006814 ORTHO05D008613 1.1e-133 480.3 294 77.9
FAN18G0582 Fragaria x ananassa HOM05D006814 ORTHO05D008613 1.8e-133 479.6 296 76.0
CsaV3_4G012030 Cucumis sativus L. HOM05D006814 ORTHO05D008613 3.1e-133 478.8 295 75.9
Solyc08g076610.4 Solanum lycopersicum HOM05D006814 ORTHO05D008613 4.0e-133 478.4 294 77.6
CAN.G298.54 Capsicum annuum HOM05D006814 ORTHO05D008613 1.2e-132 476.9 294 77.6
vmacro00308 Vaccinium macrocarpon HOM05D006814 ORTHO05D008613 2.0e-132 476.1 317 72.6
PGR031G2224 Punica granatum HOM05D006814 ORTHO05D008613 2.6e-132 475.7 294 76.2
Sopen08g025160 Solanum pennellii HOM05D006814 ORTHO05D008613 2.6e-132 475.7 294 77.2
Aqoxy4G00304 Aquilegia oxysepala HOM05D006814 ORTHO05D008613 5.8e-132 474.6 294 76.2
Lsat_1_v5_gn_3_19041 Lactuca sativa HOM05D006814 ORTHO05D008613 9.8e-132 473.8 294 75.2
PSO063G6077 Papaver somniferum HOM05D006814 ORTHO05D008613 2.9e-131 472.2 295 74.9
HanXRQChr17g0538231 Helianthus annuus HOM05D006814 ORTHO05D008613 6.4e-131 471.1 294 75.9
DCAR_032083 Daucus carota HOM05D006814 ORTHO05D008613 2.4e-130 469.2 293 75.8
HanXRQChr17g0538211 Helianthus annuus HOM05D006814 ORTHO05D008613 3.2e-130 468.8 294 75.5
ECA246G4850 Erigeron canadensis HOM05D006814 ORTHO05D008613 1.2e-129 466.8 310 71.6
MSTRG.24841 Avicennia marina HOM05D006814 ORTHO05D008613 1.6e-129 466.5 289 75.1
Migut.A01081 Erythranthe guttata HOM05D006814 ORTHO05D008613 3.5e-129 465.3 287 76.0
Lj8A305G45 Lonicera japonica HOM05D006814 ORTHO05D008613 3.9e-128 461.8 295 74.2
QL12p004459 Quercus lobata HOM05D006814 ORTHO05D008613 8.6e-128 460.7 318 72.3
Ca_26271_v3 Cicer arietinum L. HOM05D006814 ORTHO05D008613 3.3e-127 458.8 292 73.3
AUR62018677 Chenopodium quinoa HOM05D006814 ORTHO05D008613 4.3e-127 458.4 293 73.4
Sc07g0008590 Simmondsia chinensis HOM05D006814 ORTHO05D008613 4.3e-127 458.4 293 74.7
COL.COLO4_16971 Corchorus olitorius HOM05D006814 ORTHO05D008613 9.5e-127 457.2 271 77.5
Medtr8g447310 Medicago truncatula HOM05D006814 ORTHO05D008613 9.5e-127 457.2 291 72.5
Oeu005300.2 Olea europaea HOM05D006814 ORTHO05D008613 3.6e-126 455.3 342 65.5
TPR.G8183 Trifolium pratense HOM05D006814 ORTHO05D008613 6.2e-126 454.5 290 72.8
VMungo0251G2608 Vigna mungo HOM05D006814 ORTHO05D008613 1.1e-125 453.8 296 70.9
arahy.Tifrunner.gnm1.ann1.DD0PLV Arachis hypogaea HOM05D006814 ORTHO05D008613 8.9e-125 450.7 296 70.9
Lj3g0020867 Lotus japonicus HOM05D006814 ORTHO05D008613 1.2e-124 450.3 291 72.9
arahy.Tifrunner.gnm1.ann1.S7AV19 Arachis hypogaea HOM05D006814 ORTHO05D008613 2.0e-124 449.5 296 70.3
EL10Ac5g12048 Beta vulgaris HOM05D006814 ORTHO05D008613 9.9e-124 447.2 297 72.4
Psat4g131760 Pisum sativum HOM05D006814 ORTHO05D008613 1.9e-122 443.0 290 71.4
SGA_v2.0_scaffold36G14306 Striga asiatica HOM05D006814 ORTHO05D008613 9.2e-122 440.7 333 67.3
CDE11G0551 Ceratophyllum demersum HOM05D006814 ORTHO05D008613 1.6e-121 439.9 295 69.2
Os06g0132600 Oryza sativa ssp. japonica HOM05D006814 ORTHO05D008613 3.0e-120 435.6 266 74.4
Glyma.20G095300 Glycine max HOM05D006814 ORTHO05D008613 1.1e-119 433.7 295 69.8
Prupe.4G270400 Prunus persica HOM05D006814 ORTHO05D008613 1.5e-119 433.3 257 78.6
Lalb_Chr05g0228761 Lupinus albus HOM05D006814 ORTHO05D008613 2.5e-119 432.6 290 69.7
Zm00001eb269700 Zea mays HOM05D006814 ORTHO05D008613 1.2e-118 430.3 296 67.2
ATR0772G225 Amborella trichopoda HOM05D006814 ORTHO05D008613 4.0e-117 425.2 287 69.7
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 6.4e-115 417.9 293 68.3
Haze_08181 Corylus avellana HOM05D006814 ORTHO05D008613 4.2e-114 415.2 296 69.9
SEGI_31198 Sequoiadendron giganteum HOM05D006814 ORTHO05D008613 3.4e-108 395.6 289 64.7
Sed0016076 Sechium edule HOM05D006814 ORTHO05D008613 1.1e-103 380.6 222 78.4
Pp3c10_20230 Physcomitrium patens HOM05D006814 ORTHO05D008613 1.2e-97 360.5 286 59.1
AT4G17760 Arabidopsis thaliana HOM05D006814 ORTHO05D008613 2.1e-97 359.8 184 95.1
AagrBONN_evm.TU.Sc2ySwM_228.215 Anthoceros agrestis HOM05D006814 ORTHO05D008613 2.5e-95 352.8 281 58.7
Dinv28983 Davidia involucrata HOM05D006814 ORTHO05D008613 9.6e-95 350.9 205 80.5
SMO358G0599 Selaginella moellendorffii HOM05D006814 ORTHO05D008613 1.4e-93 347.1 287 58.2
Mapoly0097s0033 Marchantia polymorpha HOM05D006814 ORTHO05D008613 2.0e-92 343.2 291 58.8
Eucgr.D02215 Eucalyptus grandis HOM05D006814 ORTHO05D008613 2.5e-90 336.3 200 75.5
Phvul.003G283200 Phaseolus vulgaris HOM05D006814 ORTHO05D008613 2.5e-82 309.7 199 71.9
Nitab4.5_0025014g0010 Nicotiana tabacum HOM05D006814 ORTHO05D008613 1.7e-70 270.4 166 75.9
CBR_g3124 Chara braunii HOM05D006814 ORTHO05D008613 1.5e-68 263.8 258 50.0
GSVIVG01003310001 Vitis vinifera HOM05D006814 ORTHO05D008613 4.2e-58 229.2 149 67.8
SalBow6G3153 Salvia bowleyana HOM05D006814 ORTHO05D008613 2.6e-55 219.9 145 72.4
DCAR_021700 Daucus carota HOM05D006814 ORTHO05D013862 1.3e-46 191.0 143 67.8
Hma1.2p1_0572F.1_g181150 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 4.1e-45 186.0 139 68.3
CAN.G298.53 Capsicum annuum HOM05D006814 ORTHO05D008613 5.9e-36 155.6 106 73.6
CAN.G298.50 Capsicum annuum HOM05D006814 ORTHO05D008613 1.2e-33 147.9 97 75.3
Hma1.2p1_0586F.1_g183890 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 2.6e-31 140.2 117 61.5
Cre03.g162250 Chlamydomonas reinhardtii HOM05D006814 ORTHO05D008613 3.2e-29 133.3 334 29.0
Actinidia25985 Actinidia chinensis HOM05D006814 ORTHO05D008613 7.3e-26 122.1 71 83.1
PRCOL_00006064 Prasinoderma coloniale HOM05D006814 ORTHO05D008613 3.1e-24 116.7 323 27.2
MCO03G144 Micromonas commoda HOM05D006814 ORTHO05D008613 2.0e-23 114.0 299 27.1
CAN.G2435.1 Capsicum annuum HOM05D006814 ORTHO05D008613 7.5e-23 112.1 73 76.7
Actinidia25984 Actinidia chinensis HOM05D006814 ORTHO05D008613 1.9e-21 107.5 74 73.0
Glyma.10G145666 Glycine max HOM05D006814 ORTHO05D008613 2.4e-21 107.1 73 68.5
EL10As1g23070 Beta vulgaris HOM05D006814 ORTHO05D088401 3.4e-07 60.1 41 65.9


User provided reference genes

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