Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33562 Brassica carinata HOM05D003706 ORTHO05D004487 1.8e-72 275.8 135 100.0
C07p48810 Brassica napus HOM05D003706 ORTHO05D004487 1.1e-61 240.0 119 98.3
BolC7t45389H Brassica oleracea HOM05D003706 ORTHO05D004487 1.1e-61 240.0 119 98.3
Aa31LG6G250 Aethionema arabicum HOM05D003706 ORTHO05D004487 3.5e-60 235.0 121 90.1
CARHR224210 Cardamine hirsuta HOM05D003706 ORTHO05D004487 3.5e-60 235.0 119 95.8
BcaNung03459 Brassica carinata HOM05D003706 ORTHO05D004487 5.9e-60 234.2 119 95.8
Thhalv10026137m.g Eutrema salsugineum HOM05D003706 ORTHO05D004487 5.9e-60 234.2 119 95.8
BraA03t14138Z Brassica rapa HOM05D003706 ORTHO05D004487 1.0e-59 233.4 119 95.0
A03p50490 Brassica napus HOM05D003706 ORTHO05D004487 1.3e-59 233.0 119 95.0
AT4G17510 Arabidopsis thaliana HOM05D003706 ORTHO05D004487 1.1e-58 229.9 119 93.3
BcaNung00085 Brassica carinata HOM05D003706 ORTHO05D004487 1.1e-58 229.9 119 96.6
AL7G37120 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 1.5e-58 229.6 119 94.1
Carub.0007s2389 Capsella rubella HOM05D003706 ORTHO05D004487 1.5e-58 229.6 119 94.1
BcaC09g51635 Brassica carinata HOM05D003706 ORTHO05D004487 2.5e-58 228.8 119 95.8
C01p11160 Brassica napus HOM05D003706 ORTHO05D004487 2.5e-58 228.8 119 95.8
BolC1t01081H Brassica oleracea HOM05D003706 ORTHO05D004487 2.5e-58 228.8 119 95.8
A01p09590 Brassica napus HOM05D003706 ORTHO05D004487 3.3e-58 228.4 119 95.8
Sp7g16650 Schrenkiella parvula HOM05D003706 ORTHO05D004487 9.5e-58 226.9 119 95.0
BraA01t00901Z Brassica rapa HOM05D003706 ORTHO05D004487 1.6e-57 226.1 119 95.0
THA.LOC104813337 Tarenaya hassleriana HOM05D003706 ORTHO05D004487 2.1e-57 225.7 119 89.9
Carub.0007s2388 Capsella rubella HOM05D003706 ORTHO05D004487 1.2e-55 219.9 119 89.1
AL7G37110 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 1.7e-54 216.1 120 88.3
BcaC06g33564 Brassica carinata HOM05D003706 ORTHO05D004487 8.3e-54 213.8 136 83.8
ClCG10G002430 Citrullus lanatus HOM05D003706 ORTHO05D004487 8.6e-51 203.8 119 84.0
Sed0008996 Sechium edule HOM05D003706 ORTHO05D004487 1.1e-48 196.8 119 82.4
Lalb_Chr16g0386511 Lupinus albus HOM05D003706 ORTHO05D004487 1.4e-48 196.4 116 82.8
Glyma.17G145500 Glycine max HOM05D003706 ORTHO05D004487 2.3e-48 195.7 119 80.7
Glyma.05G063800 Glycine max HOM05D003706 ORTHO05D004487 3.1e-48 195.3 119 80.7
TWI15G0458 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 4.0e-48 194.9 119 79.8
CSS0020819 Camellia sinensis var. sinensis HOM05D003706 ORTHO05D004487 6.8e-48 194.1 116 81.9
Cpa.g.sc89.37 Carica papaya HOM05D003706 ORTHO05D004487 6.8e-48 194.1 119 77.3
MELO3C013914.2 Cucumis melo HOM05D003706 ORTHO05D004487 6.8e-48 194.1 115 83.5
Lalb_Chr05g0221021 Lupinus albus HOM05D003706 ORTHO05D004487 6.8e-48 194.1 117 80.3
Phvul.003G223748 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 1.5e-47 193.0 119 79.0
PGR042G3774 Punica granatum HOM05D003706 ORTHO05D004487 3.4e-47 191.8 119 79.0
arahy.Tifrunner.gnm1.ann1.PS7EZR Arachis hypogaea HOM05D003706 ORTHO05D004487 4.4e-47 191.4 119 78.2
MSTRG.12138 Avicennia marina HOM05D003706 ORTHO05D004487 4.4e-47 191.4 114 82.5
Manes.01G085700 Manihot esculenta HOM05D003706 ORTHO05D004487 9.8e-47 190.3 121 80.2
Peaxi162Scf00190g01214 Petunia axillaris HOM05D003706 ORTHO05D004487 9.8e-47 190.3 114 80.7
GSVIVG01004795001 Vitis vinifera HOM05D003706 ORTHO05D004487 1.3e-46 189.9 119 79.8
Migut.A01026 Erythranthe guttata HOM05D003706 ORTHO05D004487 1.7e-46 189.5 114 81.6
arahy.Tifrunner.gnm1.ann1.P7CRZW Arachis hypogaea HOM05D003706 ORTHO05D004487 2.2e-46 189.1 119 77.3
Cfa012680 Carpinus fangiana HOM05D003706 ORTHO05D004487 2.9e-46 188.7 133 72.9
QL12p009718 Quercus lobata HOM05D003706 ORTHO05D004487 2.9e-46 188.7 119 79.0
Gohir.D08G185500 Gossypium hirsutum HOM05D003706 ORTHO05D004487 3.7e-46 188.3 119 77.3
Gorai.004G194900 Gossypium raimondii HOM05D003706 ORTHO05D004487 3.7e-46 188.3 119 77.3
Thecc.03G244800 Theobroma cacao HOM05D003706 ORTHO05D004487 3.7e-46 188.3 119 77.3
Gohir.A08G166700 Gossypium hirsutum HOM05D003706 ORTHO05D004487 4.9e-46 188.0 119 77.3
Manes.02G042700 Manihot esculenta HOM05D003706 ORTHO05D004487 4.9e-46 188.0 119 78.2
Actinidia25892 Actinidia chinensis HOM05D003706 ORTHO05D004487 6.4e-46 187.6 116 81.0
Potri.003G081000 Populus trichocarpa HOM05D003706 ORTHO05D004487 6.4e-46 187.6 119 79.8
QL12p009287 Quercus lobata HOM05D003706 ORTHO05D004487 8.3e-46 187.2 119 79.0
Eucgr.E00375 Eucalyptus grandis HOM05D003706 ORTHO05D004487 1.4e-45 186.4 120 80.0
CANSAT21G1120 Cannabis sativa HOM05D003706 ORTHO05D004487 2.4e-45 185.7 119 78.2
Dinv28848 Davidia involucrata HOM05D003706 ORTHO05D004487 2.4e-45 185.7 114 81.6
Dinv39188 Davidia involucrata HOM05D003706 ORTHO05D004487 2.4e-45 185.7 114 81.6
PGSC0003DMG400024158 Solanum tuberosum HOM05D003706 ORTHO05D004487 2.4e-45 185.7 115 76.5
SGA_v2.0_scaffold104G30203 Striga asiatica HOM05D003706 ORTHO05D004487 2.4e-45 185.7 113 78.8
Sopen06g021000 Solanum pennellii HOM05D003706 ORTHO05D004487 3.2e-45 185.3 115 76.5
TAR636G2892 Trochodendron aralioides HOM05D003706 ORTHO05D004487 3.2e-45 185.3 119 75.6
Glyma.01G206200 Glycine max HOM05D003706 ORTHO05D004487 4.1e-45 184.9 112 79.5
CiPaw.11G084300 Carya illinoinensis HOM05D003706 ORTHO05D004487 5.4e-45 184.5 119 78.2
Oeu040685.1 Olea europaea HOM05D003706 ORTHO05D004487 5.4e-45 184.5 114 80.7
Duzib068G0005 Durio zibethinus HOM05D003706 ORTHO05D004487 7.1e-45 184.1 119 75.6
ECA240G2285 Erigeron canadensis HOM05D003706 ORTHO05D004487 9.2e-45 183.7 111 80.2
MD04G1057500 Malus domestica HOM05D003706 ORTHO05D004487 9.2e-45 183.7 119 78.2
arahy.Tifrunner.gnm1.ann1.JF7LYS Arachis hypogaea HOM05D003706 ORTHO05D004487 1.2e-44 183.3 122 74.6
arahy.Tifrunner.gnm1.ann1.MI1D26 Arachis hypogaea HOM05D003706 ORTHO05D004487 1.2e-44 183.3 122 74.6
Solyc06g060850.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 1.2e-44 183.3 115 75.7
Atru.chr9.1245 Acer truncatum HOM05D003706 ORTHO05D004487 1.6e-44 183.0 119 76.5
HanXRQChr16g0511641 Helianthus annuus HOM05D003706 ORTHO05D004487 1.6e-44 183.0 115 77.4
Lsat_1_v5_gn_9_30321 Lactuca sativa HOM05D003706 ORTHO05D004487 1.6e-44 183.0 115 79.1
Nitab4.5_0006805g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.6e-44 183.0 114 76.3
Ca_21985_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 2.1e-44 182.6 112 80.4
Ca_21998_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 2.1e-44 182.6 112 80.4
Dinv21679 Davidia involucrata HOM05D003706 ORTHO05D004487 2.1e-44 182.6 114 80.7
MD06G1051100 Malus domestica HOM05D003706 ORTHO05D004487 2.1e-44 182.6 119 77.3
COL.COLO4_10024 Corchorus olitorius HOM05D003706 ORTHO05D004487 2.7e-44 182.2 119 74.8
Nitab4.5_0002206g0070 Nicotiana tabacum HOM05D003706 ORTHO05D004487 2.7e-44 182.2 114 75.4
Prupe.5G061500 Prunus persica HOM05D003706 ORTHO05D004487 2.7e-44 182.2 119 77.3
Sabra03G0052000 Salix brachista HOM05D003706 ORTHO05D004487 2.7e-44 182.2 119 79.0
FAN08G3606 Fragaria x ananassa HOM05D003706 ORTHO05D004487 3.5e-44 181.8 119 77.3
Lalb_Chr05g0214291 Lupinus albus HOM05D003706 ORTHO05D004487 3.5e-44 181.8 124 71.8
Hma1.2p1_0821F.1_g224200 Hydrangea macrophylla HOM05D003706 ORTHO05D004487 4.6e-44 181.4 114 79.8
Phvul.002G000300 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 4.6e-44 181.4 111 77.5
Ciclev10023537m.g Citrus clementina HOM05D003706 ORTHO05D004487 6.0e-44 181.0 118 76.3
Medtr4g100360 Medicago truncatula HOM05D003706 ORTHO05D004487 6.0e-44 181.0 118 77.1
Nitab4.5_0000618g0150 Nicotiana tabacum HOM05D003706 ORTHO05D004487 6.0e-44 181.0 114 75.4
RcHm_v2.0_Chr7g0204661 Rosa chinensis HOM05D003706 ORTHO05D004487 6.0e-44 181.0 119 76.5
TAR629G3078 Trochodendron aralioides HOM05D003706 ORTHO05D004487 6.0e-44 181.0 116 75.9
TPR.G10445 Trifolium pratense HOM05D003706 ORTHO05D004487 7.8e-44 180.6 108 82.4
SalBow7G0213 Salvia bowleyana HOM05D003706 ORTHO05D004487 1.0e-43 180.3 111 78.4
VMungo0251G2656 Vigna mungo HOM05D003706 ORTHO05D004487 1.0e-43 180.3 119 76.5
Gohir.A12G214200 Gossypium hirsutum HOM05D003706 ORTHO05D004487 1.3e-43 179.9 119 74.8
Gohir.D12G216800 Gossypium hirsutum HOM05D003706 ORTHO05D004487 1.3e-43 179.9 119 74.8
Gorai.008G232400 Gossypium raimondii HOM05D003706 ORTHO05D004487 1.3e-43 179.9 119 74.8
Solyc08g078140.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 1.3e-43 179.9 110 77.3
FAN13G2930 Fragaria x ananassa HOM05D003706 ORTHO05D004487 3.0e-43 178.7 119 76.5
EL10Ac5g12313 Beta vulgaris HOM05D003706 ORTHO05D004487 5.1e-43 177.9 114 72.8
CAN.G62.15 Capsicum annuum HOM05D003706 ORTHO05D004487 5.1e-43 177.9 113 76.1
Ciclev10022039m.g Citrus clementina HOM05D003706 ORTHO05D004487 5.1e-43 177.9 118 75.4
Cc08_g11880 Coffea canephora HOM05D003706 ORTHO05D004487 5.1e-43 177.9 116 75.0
FAN04G0187 Fragaria x ananassa HOM05D003706 ORTHO05D004487 6.6e-43 177.6 119 75.6
Hund14510 Selenicereus undatus HOM05D003706 ORTHO05D004487 6.6e-43 177.6 113 75.2
FvH4_5g19870 Fragaria vesca HOM05D003706 ORTHO05D004487 8.6e-43 177.2 119 75.6
FAN18G2986 Fragaria x ananassa HOM05D003706 ORTHO05D004487 8.6e-43 177.2 119 75.6
CAN.G1856.6 Capsicum annuum HOM05D003706 ORTHO05D004487 1.1e-42 176.8 114 73.7
Lj4g0012322 Lotus japonicus HOM05D003706 ORTHO05D004487 1.1e-42 176.8 112 77.7
Psat4g074200 Pisum sativum HOM05D003706 ORTHO05D004487 1.1e-42 176.8 110 80.0
Haze_07960 Corylus avellana HOM05D003706 ORTHO05D004487 1.9e-42 176.0 133 70.7
MBI04_g41760_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 3.3e-42 175.3 119 71.4
PGSC0003DMG400026229 Solanum tuberosum HOM05D003706 ORTHO05D004487 5.6e-42 174.5 110 75.5
DCAR_000641 Daucus carota HOM05D003706 ORTHO05D004487 1.2e-41 173.3 119 68.1
AUR62007134 Chenopodium quinoa HOM05D003706 ORTHO05D004487 2.1e-41 172.6 114 72.8
Lalb_Chr00c54g0413631 Lupinus albus HOM05D003706 ORTHO05D004487 2.1e-41 172.6 162 58.0
vmacro00025 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 2.8e-41 172.2 115 74.8
AUR62018878 Chenopodium quinoa HOM05D003706 ORTHO05D004487 3.6e-41 171.8 114 71.9
Aqoxy3G02726 Aquilegia oxysepala HOM05D003706 ORTHO05D004487 8.1e-41 170.6 119 70.6
PSO782G4370 Papaver somniferum HOM05D003706 ORTHO05D004487 1.8e-40 169.5 116 69.8
Ah.07g198590 Amaranthus hybridus HOM05D003706 ORTHO05D004487 2.3e-40 169.1 115 69.6
PSO063G5263 Papaver somniferum HOM05D003706 ORTHO05D004487 3.1e-40 168.7 116 69.0
Nitab4.5_0009301g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 5.2e-40 167.9 119 70.6
Duzib084G0672 Durio zibethinus HOM05D003706 ORTHO05D004487 8.9e-40 167.2 119 70.6
DCAR_004606 Daucus carota HOM05D003706 ORTHO05D004487 1.2e-39 166.8 109 73.4
arahy.Tifrunner.gnm1.ann1.FUBR3I Arachis hypogaea HOM05D003706 ORTHO05D004487 3.4e-39 165.2 119 68.1
Oeu031158.1 Olea europaea HOM05D003706 ORTHO05D004487 3.4e-39 165.2 114 73.7
Lj2C226G3 Lonicera japonica HOM05D003706 ORTHO05D004487 5.8e-39 164.5 114 72.8
Peaxi162Scf00260g00418 Petunia axillaris HOM05D003706 ORTHO05D004487 2.9e-38 162.2 115 73.0
CDE11G0530 Ceratophyllum demersum HOM05D003706 ORTHO05D004487 6.4e-38 161.0 111 70.3
unitig_0.g1053 Utricularia gibba HOM05D003706 ORTHO05D004487 1.9e-37 159.5 114 70.2
VMungo1215G2603 Vigna mungo HOM05D003706 ORTHO05D004487 1.9e-37 159.5 113 69.0
SGA_v2.0_scaffold199G41234 Striga asiatica HOM05D003706 ORTHO05D004487 7.1e-37 157.5 113 69.0
vmacro00024 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 7.1e-37 157.5 164 53.0
CsaV3_3G002450 Cucumis sativus L. HOM05D003706 ORTHO05D004487 7.8e-36 154.1 94 80.9
Sc22g0001060 Simmondsia chinensis HOM05D003706 ORTHO05D004487 1.3e-35 153.3 100 76.0
HPP92_002099 Vanilla planifolia HOM05D003706 ORTHO05D004487 3.0e-35 152.1 116 65.5
Lalb_Chr00c24g0407441 Lupinus albus HOM05D003706 ORTHO05D004487 3.9e-35 151.8 94 78.7
CiPaw.12G048600 Carya illinoinensis HOM05D003706 ORTHO05D004487 8.6e-35 150.6 97 79.4
SMO364G0877 Selaginella moellendorffii HOM05D003706 ORTHO05D004487 9.6e-34 147.1 114 64.0
Mapoly0021s0071 Marchantia polymorpha HOM05D003706 ORTHO05D004487 1.2e-33 146.7 114 68.4
VMungo0251G2614 Vigna mungo HOM05D003706 ORTHO05D006202 1.2e-33 146.7 94 76.6
AagrBONN_evm.TU.Sc2ySwM_368.2205 Anthoceros agrestis HOM05D003706 ORTHO05D004487 2.1e-33 146.0 118 61.9
TPR.G4685 Trifolium pratense HOM05D003706 ORTHO05D004487 2.1e-33 146.0 94 77.7
Pp3c3_8410 Physcomitrium patens HOM05D003706 ORTHO05D004487 3.6e-33 145.2 113 63.7
Zm00001eb249260 Zea mays HOM05D003706 ORTHO05D004487 3.6e-33 145.2 113 62.8
Actinidia02181 Actinidia chinensis HOM05D003706 ORTHO05D004487 2.4e-32 142.5 95 76.8
Zm00001eb427920 Zea mays HOM05D003706 ORTHO05D004487 4.0e-32 141.7 109 63.3
Rhsim02G0172600 Rhododendron simsii HOM05D003480 ORTHO05D004487 5.2e-32 141.4 95 72.6
Zm00001eb186330 Zea mays HOM05D003706 ORTHO05D004487 5.2e-32 141.4 118 59.3
HPP92_014688 Vanilla planifolia HOM05D003706 ORTHO05D004487 1.2e-31 140.2 110 62.7
Os02g0654500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 4.4e-31 138.3 117 58.1
ATR0057G038 Amborella trichopoda HOM05D003706 ORTHO05D004487 6.4e-30 134.4 101 67.3
Nn1g00853 Nelumbo nucifera HOM05D003706 ORTHO05D004487 8.4e-30 134.0 97 71.1
TWI15G0745 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 7.1e-29 131.0 78 78.2
CBR_g30854 Chara braunii HOM05D003706 ORTHO05D004487 9.3e-29 130.6 104 62.5
Sopen08g026630 Solanum pennellii HOM05D003706 ORTHO05D004487 1.1e-26 123.6 74 75.7
Cre03.g194250 Chlamydomonas reinhardtii HOM05D003706 ORTHO05D004487 2.4e-24 115.9 104 51.9
arahy.Tifrunner.gnm1.ann1.77EYCF Arachis hypogaea HOM05D003706 ORTHO05D004487 1.5e-23 113.2 69 73.9
SHI07667 Sapria himalayana HOM05D003706 ORTHO05D004487 1.7e-22 109.8 105 52.4
Zm00001eb433120 Zea mays HOM05D003706 ORTHO05D004487 5.4e-21 104.8 115 45.2
MCO01G147 Micromonas commoda HOM05D003706 ORTHO05D004487 1.2e-20 103.6 112 47.3
Ciclev10024619m.g Citrus clementina HOM05D003706 ORTHO05D004487 6.7e-19 97.8 67 74.6
arahy.Tifrunner.gnm1.ann1.CH87W6 Arachis hypogaea HOM05D003706 ORTHO05D004487 6.2e-17 91.3 129 43.4
Cc00_g03590 Coffea canephora HOM05D003706 ORTHO05D004487 6.9e-16 87.8 66 69.7
Cc11_g04870 Coffea canephora HOM05D003706 ORTHO05D004487 2.6e-15 85.9 68 69.1
MBI04_g33725_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 8.4e-14 80.9 48 72.9
PRCOL_00002923 Prasinoderma coloniale HOM05D003706 ORTHO05D004487 8.4e-14 80.9 111 40.5
RcHm_v2.0_Chr7g0214021 Rosa chinensis HOM05D003706 ORTHO05D004487 8.4e-14 80.9 67 59.7
Os04g0667500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 5.5e-13 78.2 58 56.9
TAR375G0973 Trochodendron aralioides HOM05D003706 ORTHO05D004487 5.6e-10 68.2 44 70.5
C07p48160 Brassica napus HOM05D003706 ORTHO05D004487 8.2e-09 64.3 62 59.7
GSVIVG01005551001 Vitis vinifera HOM05D003706 ORTHO05D031576 9.0e-08 60.8 40 75.0
Os04g0546400 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 2.0e-07 59.7 50 58.0
VMungo0331G1368 Vigna mungo HOM05D003706 ORTHO05D031576 5.8e-07 58.2 35 77.1
arahy.Tifrunner.gnm1.ann1.5G37N1 Arachis hypogaea HOM05D003706 ORTHO05D031576 1.3e-06 57.0 28 92.9


User provided reference genes

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