Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 1.4e-95 352.8 170 100.0
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 3.5e-81 305.1 177 86.4
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 3.5e-81 305.1 177 86.4
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 3.5e-81 305.1 177 86.4
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 1.0e-80 303.5 177 85.9
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 1.0e-80 303.5 177 85.9
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 4.2e-79 298.1 177 84.2
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 4.2e-79 298.1 177 84.2
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 4.2e-79 298.1 177 84.2
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 5.5e-79 297.7 177 84.2
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 9.4e-79 297.0 177 84.2
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 3.6e-78 295.0 177 83.6
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 6.1e-78 294.3 177 83.1
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 6.1e-78 294.3 177 82.5
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 6.1e-78 294.3 177 83.1
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 6.1e-78 294.3 177 82.5
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 1.1e-76 290.0 177 80.8
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 1.5e-76 289.7 177 80.8
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 2.0e-76 289.3 179 82.7
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 2.0e-76 289.3 179 82.7
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 2.6e-76 288.9 177 81.4
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 5.7e-76 287.7 177 81.4
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 5.7e-76 287.7 177 81.4
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 5.7e-76 287.7 177 81.4
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 3.1e-74 282.0 177 77.4
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 5.3e-74 281.2 177 78.0
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 5.3e-74 281.2 177 78.5
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 7.0e-74 280.8 177 77.4
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 1.2e-73 280.0 177 78.0
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 2.0e-73 279.3 177 76.3
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 3.5e-73 278.5 177 77.4
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 2.2e-72 275.8 177 75.1
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 2.2e-72 275.8 177 75.1
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 2.9e-72 275.4 177 76.3
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 3.8e-72 275.0 177 75.7
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 3.8e-72 275.0 177 75.1
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 3.8e-72 275.0 177 75.1
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 3.8e-72 275.0 177 75.1
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 3.8e-72 275.0 177 75.7
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 5.0e-72 274.6 177 75.1
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 6.5e-72 274.2 177 75.1
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 6.5e-72 274.2 177 75.1
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 6.5e-72 274.2 177 75.7
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 6.5e-72 274.2 177 75.7
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 8.5e-72 273.9 177 74.6
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 8.5e-72 273.9 177 75.7
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 1.1e-71 273.5 177 74.6
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 1.1e-71 273.5 177 74.6
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 1.5e-71 273.1 177 74.0
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 1.5e-71 273.1 177 75.7
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 1.5e-71 273.1 177 75.7
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 1.5e-71 273.1 177 75.7
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 1.5e-71 273.1 177 76.3
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 1.5e-71 273.1 177 74.6
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 1.5e-71 273.1 177 75.7
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 1.9e-71 272.7 177 75.1
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 1.9e-71 272.7 177 75.1
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 1.9e-71 272.7 177 74.0
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 2.5e-71 272.3 177 74.0
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 3.2e-71 271.9 177 75.1
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 4.2e-71 271.6 177 74.0
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 5.5e-71 271.2 177 74.0
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 5.5e-71 271.2 177 75.1
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 5.5e-71 271.2 177 75.1
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 5.5e-71 271.2 177 75.1
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 5.5e-71 271.2 177 75.1
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 5.5e-71 271.2 177 75.1
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 5.5e-71 271.2 177 75.1
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 5.5e-71 271.2 177 75.1
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 5.5e-71 271.2 177 73.4
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 7.2e-71 270.8 177 72.9
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 7.2e-71 270.8 177 74.6
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 9.4e-71 270.4 177 74.6
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 1.2e-70 270.0 177 79.1
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 1.2e-70 270.0 177 75.1
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 1.2e-70 270.0 177 74.0
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 3.6e-70 268.5 177 75.7
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 4.7e-70 268.1 177 73.4
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 1.0e-69 266.9 177 74.0
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 1.8e-69 266.2 177 71.8
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 1.8e-69 266.2 177 71.8
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 2.3e-69 265.8 177 72.9
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 5.2e-69 264.6 177 71.8
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 6.8e-69 264.2 176 73.9
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 6.8e-69 264.2 177 73.4
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 8.8e-69 263.8 177 71.8
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 1.2e-68 263.5 177 72.3
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 1.2e-68 263.5 177 74.0
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.5e-68 263.1 177 72.9
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 2.0e-68 262.7 177 71.2
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 2.6e-68 262.3 176 73.3
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 3.4e-68 261.9 177 73.4
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 4.4e-68 261.5 177 72.9
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 5.7e-68 261.2 177 72.9
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 5.7e-68 261.2 177 72.9
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 5.7e-68 261.2 177 72.9
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 9.8e-68 260.4 177 72.3
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 9.8e-68 260.4 177 70.6
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.3e-67 260.0 177 71.2
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 2.2e-67 259.2 176 72.2
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 2.8e-67 258.8 177 70.1
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 6.3e-67 257.7 177 71.8
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 1.1e-66 256.9 176 71.0
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 2.4e-66 255.8 177 70.6
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 3.1e-66 255.4 176 72.2
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 4.1e-66 255.0 177 70.1
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 9.1e-66 253.8 177 69.5
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 2.0e-65 252.7 177 69.5
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 2.7e-65 252.3 178 72.5
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 3.5e-65 251.9 178 70.2
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 2.9e-64 248.8 178 70.8
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 3.8e-64 248.4 178 70.8
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 8.5e-64 247.3 178 70.2
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 2.5e-63 245.7 178 70.2
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 2.5e-63 245.7 166 73.5
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 7.2e-63 244.2 177 67.8
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 9.5e-63 243.8 177 67.8
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 9.5e-63 243.8 178 71.9
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.6e-62 243.0 181 68.0
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 2.7e-62 242.3 177 67.8
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 4.7e-62 241.5 177 67.2
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 6.1e-62 241.1 179 68.7
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 6.1e-62 241.1 166 73.5
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 8.0e-62 240.7 163 71.8
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.4e-61 240.0 159 73.0
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 1.8e-61 239.6 177 65.0
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 2.3e-61 239.2 180 67.8
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 3.0e-61 238.8 166 71.7
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 4.0e-61 238.4 179 68.2
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 1.5e-60 236.5 177 67.8
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 1.5e-60 236.5 177 66.7
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 1.4e-58 229.9 177 65.0
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 4.5e-57 224.9 166 65.7
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 9.5e-55 217.2 177 59.3
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 8.0e-54 214.2 177 59.9
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 3.0e-53 212.2 177 59.3
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 4.0e-53 211.8 177 58.2
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 5.2e-53 211.5 177 61.0
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 5.2e-53 211.5 177 61.0
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 3.2e-50 202.2 179 57.0
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 7.0e-50 201.1 177 56.5
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 5.0e-48 194.9 177 55.9
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 5.6e-47 191.4 170 57.6
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 3.1e-45 185.7 165 61.8
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 1.9e-42 176.4 176 47.7
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 1.2e-41 173.7 166 52.4
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 1.5e-39 166.8 101 76.2
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 1.7e-35 153.3 177 49.7
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 4.9e-35 151.8 122 62.3
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 1.4e-34 150.2 90 77.8
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 5.4e-34 148.3 177 43.5
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 7.1e-34 147.9 74 93.2
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 2.1e-30 136.3 78 82.1
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 1.2e-28 130.6 87 78.2
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 3.4e-28 129.0 95 70.5
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 5.8e-28 128.3 166 47.0
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 3.0e-24 115.9 83 63.9
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 8.6e-24 114.4 127 48.8
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 3.4e-20 102.4 130 45.4


User provided reference genes

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