Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 3.5e-27 124.4 71 100.0
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 1.1e-25 119.4 68 94.1
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 3.1e-23 111.3 58 100.0
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 3.1e-23 111.3 58 100.0
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 3.4e-22 107.8 57 98.2
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 3.4e-22 107.8 57 98.2
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 6.4e-21 103.6 71 77.5
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 1.3e-18 95.9 65 78.5
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 7.3e-17 90.1 55 85.5
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 1.6e-16 89.0 55 85.5
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 1.6e-16 89.0 64 73.4
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 4.4e-14 80.9 45 91.1
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 4.4e-14 80.9 52 76.9
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 2.9e-13 78.2 52 73.1
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 2.9e-13 78.2 48 79.2
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 3.7e-13 77.8 59 67.8
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 2.4e-12 75.1 56 67.9
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 3.2e-12 74.7 54 66.7
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 5.4e-12 73.9 54 66.7
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 7.1e-12 73.6 49 75.5
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 9.2e-12 73.2 48 75.0
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 9.2e-12 73.2 50 70.0
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.2e-11 72.8 54 64.8
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 2.1e-11 72.0 56 66.1
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 2.7e-11 71.6 50 68.0
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 2.7e-11 71.6 50 70.0
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 2.7e-11 71.6 52 65.4
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 3.5e-11 71.2 48 72.9
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 3.5e-11 71.2 48 72.9
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 3.5e-11 71.2 52 65.4
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 3.5e-11 71.2 54 63.0
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 3.5e-11 71.2 50 68.0
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 4.6e-11 70.9 47 72.3
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 4.6e-11 70.9 45 73.3
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 4.6e-11 70.9 64 60.9
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 6.0e-11 70.5 77 55.8
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 6.0e-11 70.5 52 67.3
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 7.8e-11 70.1 55 63.6
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 7.8e-11 70.1 58 60.3
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 7.8e-11 70.1 56 58.9
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 1.0e-10 69.7 54 59.3
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 1.0e-10 69.7 54 63.0
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 1.3e-10 69.3 50 66.0
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 1.3e-10 69.3 44 72.7
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 1.3e-10 69.3 53 62.3
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 1.3e-10 69.3 50 66.0
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 1.3e-10 69.3 52 65.4
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 1.7e-10 68.9 49 69.4
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 1.7e-10 68.9 54 61.1
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 2.3e-10 68.6 45 71.1
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 2.3e-10 68.6 50 72.0
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 3.0e-10 68.2 55 65.5
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 3.0e-10 68.2 54 63.0
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 3.9e-10 67.8 58 65.5
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 6.6e-10 67.0 56 62.5
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 6.6e-10 67.0 50 70.0
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 8.6e-10 66.6 52 61.5
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 1.1e-09 66.2 49 67.3
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 1.5e-09 65.9 50 62.0
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.5e-09 65.9 58 56.9
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 1.5e-09 65.9 68 51.5
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 1.9e-09 65.5 50 58.0
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 1.9e-09 65.5 50 64.0
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 1.9e-09 65.5 52 63.5
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 1.9e-09 65.5 52 63.5
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 2.5e-09 65.1 50 70.0
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 2.5e-09 65.1 56 66.1
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 2.5e-09 65.1 50 68.0
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 3.3e-09 64.7 56 57.1
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 3.3e-09 64.7 49 61.2
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 3.3e-09 64.7 50 68.0
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 4.3e-09 64.3 45 66.7
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 4.3e-09 64.3 50 68.0
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 4.3e-09 64.3 52 57.7
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 5.6e-09 63.9 48 66.7
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 7.3e-09 63.5 51 62.7
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 9.5e-09 63.2 47 63.8
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 2.1e-08 62.0 49 61.2
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 2.8e-08 61.6 50 58.0
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 2.8e-08 61.6 49 57.1
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 2.8e-08 61.6 44 70.5
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 4.7e-08 60.8 68 47.1
Lalb_Chr20g0107771 Lupinus albus HOM05D007833 ORTHO05D009855 6.8e-07 57.0 50 64.0
Potri.017G127350 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.2e-06 56.2 43 65.1
Migut.N02161 Erythranthe guttata HOM05D007833 ORTHO05D009855 1.5e-06 55.8 51 60.8
THA.LOC109116323 Tarenaya hassleriana HOM05D007833 ORTHO05D009855 1.5e-06 55.8 46 65.2
HPP92_007464 Vanilla planifolia HOM05D027844 ORTHO05D009855 3.4e-06 54.7 51 51.0
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 4.4e-06 54.3 50 52.0
SalBow6G6192 Salvia bowleyana HOM05D007833 ORTHO05D009855 4.4e-06 54.3 56 55.4


User provided reference genes

Program Settings