Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33377 Brassica carinata HOM05D002214 ORTHO05D007367 2.9e-246 854.7 428 100.0
A03p48610 Brassica napus HOM05D002214 ORTHO05D007367 9.8e-242 839.7 428 97.9
C07p46730 Brassica napus HOM05D002214 ORTHO05D007367 9.8e-242 839.7 428 97.9
BolC7t45191H Brassica oleracea HOM05D002214 ORTHO05D007367 3.2e-240 834.7 445 95.1
BcaC06g33020 Brassica carinata HOM05D002214 ORTHO05D007367 2.2e-233 812.0 429 93.5
Sp5g10260 Schrenkiella parvula HOM05D002214 ORTHO05D007367 6.8e-227 790.4 428 91.4
BraA03t13966Z Brassica rapa HOM05D002214 ORTHO05D007367 3.7e-225 784.6 427 93.0
Thhalv10010397m.g Eutrema salsugineum HOM05D002214 ORTHO05D007367 1.1e-224 783.1 429 90.4
CARHR161660 Cardamine hirsuta HOM05D002214 ORTHO05D007367 3.9e-222 774.6 431 87.7
AT3G52030 Arabidopsis thaliana HOM05D002214 ORTHO05D007367 8.4e-217 756.9 434 86.9
Carub.0005s1835 Capsella rubella HOM05D002214 ORTHO05D007367 6.6e-214 747.3 427 87.1
AL5G32570 Arabidopsis lyrata HOM05D002214 ORTHO05D007367 7.3e-213 743.8 448 83.9
THA.LOC104817574 Tarenaya hassleriana HOM05D002214 ORTHO05D007367 4.6e-183 644.8 429 73.4
TWI09G0406 Tripterygium wilfordii HOM05D002214 ORTHO05D007367 3.3e-149 532.3 425 62.4
Duzib138G1340 Durio zibethinus HOM05D002214 ORTHO05D007367 3.8e-145 518.8 411 60.8
Ciclev10031605m.g Citrus clementina HOM05D002214 ORTHO05D007367 4.2e-144 515.4 425 59.5
Gorai.004G170100 Gossypium raimondii HOM05D002214 ORTHO05D007367 5.5e-144 515.0 425 58.8
Manes.07G010800 Manihot esculenta HOM05D002214 ORTHO05D007367 3.6e-143 512.3 432 60.0
Thecc.01G406200 Theobroma cacao HOM05D002214 ORTHO05D007367 5.2e-142 508.4 433 58.2
GSVIVG01032215001 Vitis vinifera HOM05D002214 ORTHO05D007367 2.0e-141 506.5 428 57.2
Gohir.A08G142300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 2.6e-141 506.1 424 58.0
CiPaw.14G003400 Carya illinoinensis HOM05D002214 ORTHO05D007367 8.3e-140 501.1 426 58.2
Cfa010812 Carpinus fangiana HOM05D002214 ORTHO05D007367 1.6e-138 496.9 425 57.6
RcHm_v2.0_Chr1g0318361 Rosa chinensis HOM05D002214 ORTHO05D007367 1.6e-138 496.9 428 57.5
Potri.009G056500 Populus trichocarpa HOM05D002214 ORTHO05D007367 2.9e-137 492.7 428 57.0
CANSAT80G0536 Cannabis sativa HOM05D002214 ORTHO05D007367 3.8e-137 492.3 409 58.2
FAN03G2729 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.9e-136 490.0 431 56.6
Actinidia19424 Actinidia chinensis HOM05D002214 ORTHO05D007367 3.3e-136 489.2 431 55.2
FAN10G2270 Fragaria x ananassa HOM05D002214 ORTHO05D007367 4.2e-136 488.8 429 56.2
Rhsim07G0058900 Rhododendron simsii HOM05D002214 ORTHO05D007367 6.8e-134 481.5 431 55.0
Eucgr.G03320 Eucalyptus grandis HOM05D002214 ORTHO05D007367 2.0e-133 479.9 410 56.8
MD07G1023200 Malus domestica HOM05D002214 ORTHO05D007367 5.7e-133 478.4 419 56.3
Sc11g0009040 Simmondsia chinensis HOM05D002214 ORTHO05D007367 1.7e-132 476.9 426 54.5
Eucgr.G03301 Eucalyptus grandis HOM05D002214 ORTHO05D007367 6.3e-132 474.9 410 56.1
Hma1.2p1_0685F.1_g203260 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 3.1e-131 472.6 429 55.0
Sed0008197 Sechium edule HOM05D002214 ORTHO05D007367 1.1e-128 464.2 429 54.5
CsaV3_7G030710 Cucumis sativus L. HOM05D002214 ORTHO05D007367 1.9e-128 463.4 428 54.0
Aqoxy2G00221 Aquilegia oxysepala HOM05D002214 ORTHO05D007367 2.8e-127 459.5 422 53.1
Glyma.11G159230 Glycine max HOM05D002214 ORTHO05D007367 8.0e-127 458.0 407 53.3
Lalb_Chr25g0282551 Lupinus albus HOM05D002214 ORTHO05D007367 3.1e-126 456.1 422 52.4
Prupe.2G024000 Prunus persica HOM05D002214 ORTHO05D007367 5.2e-126 455.3 424 55.2
Lj3g0007976 Lotus japonicus HOM05D002214 ORTHO05D007367 1.5e-125 453.8 423 52.5
AUR62023095 Chenopodium quinoa HOM05D002214 ORTHO05D007367 3.4e-125 452.6 418 51.0
Sopen01g034840 Solanum pennellii HOM05D002214 ORTHO05D007367 1.7e-124 450.3 427 52.2
Ca_24837_v3 Cicer arietinum L. HOM05D002214 ORTHO05D007367 6.4e-124 448.4 416 51.9
Solyc01g087910.4 Solanum lycopersicum HOM05D002214 ORTHO05D007367 6.4e-124 448.4 434 51.8
Nn7g36334 Nelumbo nucifera HOM05D002214 ORTHO05D007367 1.1e-123 447.6 409 53.8
arahy.Tifrunner.gnm1.ann1.IP56PK Arachis hypogaea HOM05D002214 ORTHO05D007367 1.4e-123 447.2 423 51.8
CAN.G909.6 Capsicum annuum HOM05D002214 ORTHO05D007367 4.1e-123 445.7 419 53.7
Medtr3g034210 Medicago truncatula HOM05D002214 ORTHO05D007367 5.4e-123 445.3 426 50.7
Atru.chr11.2515 Acer truncatum HOM05D002214 ORTHO05D007367 9.2e-123 444.5 425 51.8
arahy.Tifrunner.gnm1.ann1.KRTV89 Arachis hypogaea HOM05D002214 ORTHO05D007367 9.2e-123 444.5 423 51.5
DCAR_022375 Daucus carota HOM05D002214 ORTHO05D007367 3.5e-122 442.6 419 52.3
Psat5g212440 Pisum sativum HOM05D002214 ORTHO05D007367 3.5e-122 442.6 425 50.1
Phvul.005G035100 Phaseolus vulgaris HOM05D002214 ORTHO05D007367 4.6e-122 442.2 412 51.5
QL04p010195 Quercus lobata HOM05D002214 ORTHO05D007367 3.0e-121 439.5 447 50.6
vmacro13697 Vaccinium macrocarpon HOM05D002214 ORTHO05D007367 5.0e-121 438.7 485 48.0
TPR.G14558 Trifolium pratense HOM05D002214 ORTHO05D007367 3.3e-120 436.0 425 49.4
VMungo1217G0001 Vigna mungo HOM05D002214 ORTHO05D007367 9.5e-120 434.5 412 50.7
SGA_v2.0_scaffold5G02954 Striga asiatica HOM05D002214 ORTHO05D007367 1.8e-118 430.3 434 50.0
Migut.N01800 Erythranthe guttata HOM05D002214 ORTHO05D007367 4.0e-118 429.1 456 47.8
Lsat_1_v5_gn_7_35840 Lactuca sativa HOM05D002214 ORTHO05D007367 6.8e-118 428.3 428 49.5
PGR031G3638 Punica granatum HOM05D002214 ORTHO05D007367 1.5e-117 427.2 468 47.9
Gohir.D08G163300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 9.8e-117 424.5 310 62.9
CSS0000146 Camellia sinensis var. sinensis HOM05D002214 ORTHO05D007367 1.9e-115 420.2 434 50.5
TAR633G1256 Trochodendron aralioides HOM05D002214 ORTHO05D007367 2.4e-115 419.9 356 56.7
Cc02_g28820 Coffea canephora HOM05D002214 ORTHO05D007367 5.4e-115 418.7 512 43.0
Peaxi162Scf01270g00126 Petunia axillaris HOM05D002214 ORTHO05D007367 7.3e-112 408.3 448 49.1
PSO339G3363 Papaver somniferum HOM05D002214 ORTHO05D007367 6.2e-111 405.2 416 51.2
Nitab4.5_0001244g0060 Nicotiana tabacum HOM05D002214 ORTHO05D007367 6.4e-108 395.2 417 49.6
PSO384G3385 Papaver somniferum HOM05D002214 ORTHO05D007367 6.4e-108 395.2 419 50.1
FvH4_7g01770 Fragaria vesca HOM05D002214 ORTHO05D007367 1.4e-107 394.0 309 61.5
ECA236G0637 Erigeron canadensis HOM05D002214 ORTHO05D001664 3.9e-105 386.0 414 47.3
Ah.16g100650 Amaranthus hybridus HOM05D002214 ORTHO05D007367 3.3e-104 382.9 360 50.8
MBI03_g28525_MAGBIO Magnolia biondii HOM05D002214 ORTHO05D007367 4.0e-102 375.9 424 47.6
unitig_22.g5896 Utricularia gibba HOM05D002214 ORTHO05D007367 4.0e-102 375.9 424 43.9
ATR0782G063 Amborella trichopoda HOM05D002214 ORTHO05D007367 8.9e-102 374.8 418 47.1
HPP92_021380 Vanilla planifolia HOM05D002214 ORTHO05D007367 3.4e-101 372.9 413 46.0
Dinv07431 Davidia involucrata HOM05D002214 ORTHO05D005113 7.6e-101 371.7 310 58.4
ClCG09G004430 Citrullus lanatus HOM05D002214 ORTHO05D007367 1.2e-98 364.4 350 52.9
Zm00001eb091260 Zea mays HOM05D002214 ORTHO05D007367 6.0e-98 362.1 434 42.9
QL04p010150 Quercus lobata HOM05D002214 ORTHO05D007367 5.1e-97 359.0 352 52.6
Os11g0182400 Oryza sativa ssp. japonica HOM05D002214 ORTHO05D007367 8.7e-97 358.2 403 43.7
Aa31LG10G14890 Aethionema arabicum HOM05D002214 ORTHO05D007367 9.9e-93 344.7 241 71.8
Nitab4.5_0008942g0050 Nicotiana tabacum HOM05D002214 ORTHO05D007367 4.9e-92 342.4 430 45.6
EL10Ac2g04369 Beta vulgaris HOM05D002214 ORTHO05D007367 2.4e-91 340.1 418 42.3
Oeu051405.1 Olea europaea HOM05D002214 ORTHO05D007367 6.2e-87 325.5 312 51.9
FAN24G1013 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.2e-83 313.2 448 43.3
FvH4_2g17890 Fragaria vesca HOM05D002214 ORTHO05D007367 7.1e-83 312.0 448 43.1
QL04p010068 Quercus lobata HOM05D002214 ORTHO05D007367 1.2e-82 311.2 248 60.9
HanXRQChr04g0119861 Helianthus annuus HOM05D002214 ORTHO05D007367 6.9e-78 295.4 281 53.0
FAN15G3441 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.5e-77 294.3 446 41.5
FAN24G2408 Fragaria x ananassa HOM05D002214 ORTHO05D007367 7.6e-77 292.0 448 40.2
SalBow6G2835 Salvia bowleyana HOM05D002214 ORTHO05D007367 3.8e-76 289.7 296 50.3
FAN06G2164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 4.8e-71 272.7 237 57.0
MELO3C023585.2 Cucumis melo HOM05D002214 ORTHO05D007367 6.2e-71 272.3 421 39.2
AUR62009418 Chenopodium quinoa HOM05D002214 ORTHO05D007367 1.1e-70 271.6 409 36.2
FAN27G1816 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.4e-70 270.4 442 39.8
Haze_03152 Corylus avellana HOM05D002214 ORTHO05D007367 3.1e-70 270.0 407 41.5
Haze_03149 Corylus avellana HOM05D002214 ORTHO05D007367 1.5e-69 267.7 407 41.3
FAN27G1164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.1e-66 257.3 409 40.8
Cpa.g.sc125.50 Carica papaya HOM05D002214 ORTHO05D007367 1.3e-63 248.1 198 58.1
QL04p010120 Quercus lobata HOM05D002214 ORTHO05D007367 5.9e-61 239.2 205 60.0
Cpa.g.sc125.51 Carica papaya HOM05D002214 ORTHO05D007367 5.5e-59 232.6 245 51.0
RcHm_v2.0_Chr6g0283161 Rosa chinensis HOM05D002214 ORTHO05D007367 1.2e-58 231.5 317 46.7
AagrBONN_evm.TU.Sc2ySwM_344.2511 Anthoceros agrestis HOM05D002214 ORTHO05D007367 4.7e-50 203.0 450 28.4
COL.COLO4_12334 Corchorus olitorius HOM05D000031 ORTHO05D000030 1.4e-49 201.4 340 35.3
Lj9A641T67 Lonicera japonica HOM05D002214 ORTHO05D007367 1.6e-42 177.9 283 36.4
MD07G1016900 Malus domestica HOM05D002214 ORTHO05D007367 3.6e-42 176.8 223 42.2
FvH4_2g17910 Fragaria vesca HOM05D002214 ORTHO05D007367 6.7e-41 172.6 234 40.6
FAN24G3278 Fragaria x ananassa HOM05D002214 ORTHO05D007367 6.7e-41 172.6 234 40.6
CDE04G0429 Ceratophyllum demersum HOM05D002214 ORTHO05D007367 8.8e-41 172.2 190 42.6
Aa31LG10G14900 Aethionema arabicum HOM05D002214 ORTHO05D007367 3.3e-40 170.2 119 68.9
Pp3c8_19810 Physcomitrium patens HOM05D002214 ORTHO05D007367 5.7e-40 169.5 412 26.7
Hund16632 Selenicereus undatus HOM05D002214 ORTHO05D007367 7.4e-40 169.1 164 50.6
Hma1.2p1_0685F.1_g203270 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 1.8e-38 164.5 150 52.0
Hund16633 Selenicereus undatus HOM05D002214 ORTHO05D007367 7.0e-38 162.5 148 52.0
SMO137G0282 Selaginella moellendorffii HOM05D002214 ORTHO05D007367 2.5e-35 154.1 351 31.6
SEGI_30351 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 2.1e-34 151.0 140 50.7
Thecc.01G405700 Theobroma cacao HOM05D002214 ORTHO05D007367 4.1e-30 136.7 102 61.8
FAN06G4994 Fragaria x ananassa HOM05D002214 ORTHO05D007367 9.1e-30 135.6 154 45.5
CBR_g46897 Chara braunii HOM05D002214 ORTHO05D007367 8.5e-28 129.0 375 26.9
Thecc.01G405800 Theobroma cacao HOM05D002214 ORTHO05D007367 1.7e-23 114.8 83 66.3
Duzib133G0745 Durio zibethinus HOM05D002214 ORTHO05D007367 7.7e-21 105.9 69 66.7
SEGI_07097 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 2.8e-18 97.4 135 39.3
Oeu016638.1 Olea europaea HOM05D002214 ORTHO05D007367 2.3e-17 94.4 106 42.5
Hma1.2p1_0685F.1_g203250 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 8.6e-12 75.9 114 38.6
Lj9C641T18 Lonicera japonica HOM05D002214 ORTHO05D007367 8.9e-09 65.9 90 42.2
FAN24G0587 Fragaria x ananassa HOM05D002214 ORTHO05D045595 4.4e-08 63.5 89 39.3
FAN27G0866 Fragaria x ananassa HOM05D002214 ORTHO05D007367 5.8e-08 63.2 75 38.7
AUR62022086 Chenopodium quinoa HOM05D000453 ORTHO05D000387 2.4e-06 57.8 179 22.3
Peaxi162Scf00015g00841 Petunia axillaris HOM05D003769 ORTHO05D004521 5.4e-06 56.6 157 28.7
Atru.chr11.2520 Acer truncatum HOM05D002214 ORTHO05D007367 9.2e-06 55.8 55 58.2


User provided reference genes

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