Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33020 Brassica carinata HOM05D002214 ORTHO05D007367 2.4e-248 861.7 429 100.0
A03p48610 Brassica napus HOM05D002214 ORTHO05D007367 1.2e-236 822.8 429 94.9
C07p46730 Brassica napus HOM05D002214 ORTHO05D007367 8.9e-235 816.6 429 93.7
BcaC06g33377 Brassica carinata HOM05D002214 ORTHO05D007367 1.7e-233 812.4 429 93.5
BolC7t45191H Brassica oleracea HOM05D002214 ORTHO05D007367 9.5e-229 796.6 446 89.5
Sp5g10260 Schrenkiella parvula HOM05D002214 ORTHO05D007367 1.2e-226 789.6 429 91.4
Thhalv10010397m.g Eutrema salsugineum HOM05D002214 ORTHO05D007367 5.4e-224 780.8 430 90.7
CARHR161660 Cardamine hirsuta HOM05D002214 ORTHO05D007367 3.5e-223 778.1 431 87.9
BraA03t13966Z Brassica rapa HOM05D002214 ORTHO05D007367 6.9e-219 763.8 428 89.7
AT3G52030 Arabidopsis thaliana HOM05D002214 ORTHO05D007367 1.7e-217 759.2 434 87.1
Carub.0005s1835 Capsella rubella HOM05D002214 ORTHO05D007367 1.2e-215 753.1 427 87.8
AL5G32570 Arabidopsis lyrata HOM05D002214 ORTHO05D007367 1.6e-212 742.7 448 83.7
THA.LOC104817574 Tarenaya hassleriana HOM05D002214 ORTHO05D007367 1.2e-186 656.8 429 73.4
TWI09G0406 Tripterygium wilfordii HOM05D002214 ORTHO05D007367 7.5e-149 531.2 425 61.9
Duzib138G1340 Durio zibethinus HOM05D002214 ORTHO05D007367 1.2e-146 523.9 411 61.3
Gorai.004G170100 Gossypium raimondii HOM05D002214 ORTHO05D007367 7.7e-146 521.2 424 59.2
Ciclev10031605m.g Citrus clementina HOM05D002214 ORTHO05D007367 3.8e-145 518.8 416 59.6
Manes.07G010800 Manihot esculenta HOM05D002214 ORTHO05D007367 7.2e-144 514.6 432 59.5
GSVIVG01032215001 Vitis vinifera HOM05D002214 ORTHO05D007367 1.2e-143 513.8 429 58.5
Gohir.A08G142300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 2.8e-143 512.7 423 58.4
Thecc.01G406200 Theobroma cacao HOM05D002214 ORTHO05D007367 3.6e-143 512.3 433 58.0
RcHm_v2.0_Chr1g0318361 Rosa chinensis HOM05D002214 ORTHO05D007367 9.8e-141 504.2 422 58.3
Potri.009G056500 Populus trichocarpa HOM05D002214 ORTHO05D007367 2.2e-140 503.1 419 58.9
CiPaw.14G003400 Carya illinoinensis HOM05D002214 ORTHO05D007367 4.9e-140 501.9 410 58.5
Cfa010812 Carpinus fangiana HOM05D002214 ORTHO05D007367 3.1e-139 499.2 425 57.4
FAN03G2729 Fragaria x ananassa HOM05D002214 ORTHO05D007367 4.5e-138 495.4 422 57.3
CANSAT80G0536 Cannabis sativa HOM05D002214 ORTHO05D007367 7.8e-138 494.6 409 57.2
FAN10G2270 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.0e-137 494.2 420 56.9
Actinidia19424 Actinidia chinensis HOM05D002214 ORTHO05D007367 5.6e-136 488.4 431 55.7
Eucgr.G03320 Eucalyptus grandis HOM05D002214 ORTHO05D007367 8.9e-134 481.1 410 56.8
Sc11g0009040 Simmondsia chinensis HOM05D002214 ORTHO05D007367 8.9e-134 481.1 426 55.6
Rhsim07G0058900 Rhododendron simsii HOM05D002214 ORTHO05D007367 2.0e-133 479.9 431 54.8
Hma1.2p1_0685F.1_g203260 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 2.6e-133 479.6 429 55.9
MD07G1023200 Malus domestica HOM05D002214 ORTHO05D007367 2.6e-133 479.6 417 57.1
Eucgr.G03301 Eucalyptus grandis HOM05D002214 ORTHO05D007367 2.9e-132 476.1 410 56.1
Aqoxy2G00221 Aquilegia oxysepala HOM05D002214 ORTHO05D007367 1.3e-129 467.2 421 54.2
Prupe.2G024000 Prunus persica HOM05D002214 ORTHO05D007367 2.5e-128 463.0 424 56.1
Sed0008197 Sechium edule HOM05D002214 ORTHO05D007367 7.3e-128 461.5 423 54.1
CsaV3_7G030710 Cucumis sativus L. HOM05D002214 ORTHO05D007367 1.1e-126 457.6 428 52.6
AUR62023095 Chenopodium quinoa HOM05D002214 ORTHO05D007367 2.3e-126 456.4 418 52.2
Lalb_Chr25g0282551 Lupinus albus HOM05D002214 ORTHO05D007367 6.8e-126 454.9 417 52.8
Lj3g0007976 Lotus japonicus HOM05D002214 ORTHO05D007367 1.5e-125 453.8 423 52.2
Glyma.11G159230 Glycine max HOM05D002214 ORTHO05D007367 2.0e-125 453.4 409 53.5
Nn7g36334 Nelumbo nucifera HOM05D002214 ORTHO05D007367 2.6e-125 453.0 407 53.3
arahy.Tifrunner.gnm1.ann1.IP56PK Arachis hypogaea HOM05D002214 ORTHO05D007367 9.8e-125 451.1 414 52.2
Ca_24837_v3 Cicer arietinum L. HOM05D002214 ORTHO05D007367 1.7e-124 450.3 416 52.2
Atru.chr11.2515 Acer truncatum HOM05D002214 ORTHO05D007367 2.2e-124 449.9 417 53.5
arahy.Tifrunner.gnm1.ann1.KRTV89 Arachis hypogaea HOM05D002214 ORTHO05D007367 3.7e-124 449.1 414 52.2
DCAR_022375 Daucus carota HOM05D002214 ORTHO05D007367 6.4e-124 448.4 419 51.3
Sopen01g034840 Solanum pennellii HOM05D002214 ORTHO05D007367 8.3e-124 448.0 426 52.1
CAN.G909.6 Capsicum annuum HOM05D002214 ORTHO05D007367 1.4e-123 447.2 418 53.3
Medtr3g034210 Medicago truncatula HOM05D002214 ORTHO05D007367 4.1e-123 445.7 426 51.2
QL04p010195 Quercus lobata HOM05D002214 ORTHO05D007367 7.0e-123 444.9 446 50.4
Solyc01g087910.4 Solanum lycopersicum HOM05D002214 ORTHO05D007367 2.7e-122 443.0 426 51.4
Psat5g212440 Pisum sativum HOM05D002214 ORTHO05D007367 1.7e-121 440.3 425 49.6
vmacro13697 Vaccinium macrocarpon HOM05D002214 ORTHO05D007367 5.1e-121 438.7 485 47.8
Phvul.005G035100 Phaseolus vulgaris HOM05D002214 ORTHO05D007367 1.5e-120 437.2 413 50.8
PGR031G3638 Punica granatum HOM05D002214 ORTHO05D007367 1.5e-120 437.2 469 48.0
TPR.G14558 Trifolium pratense HOM05D002214 ORTHO05D007367 4.7e-119 432.2 425 48.7
SGA_v2.0_scaffold5G02954 Striga asiatica HOM05D002214 ORTHO05D007367 6.2e-119 431.8 421 51.1
Migut.N01800 Erythranthe guttata HOM05D002214 ORTHO05D007367 3.1e-118 429.5 456 48.0
VMungo1217G0001 Vigna mungo HOM05D002214 ORTHO05D007367 4.0e-118 429.1 413 49.9
Gohir.D08G163300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 8.9e-118 427.9 310 63.5
Lsat_1_v5_gn_7_35840 Lactuca sativa HOM05D002214 ORTHO05D007367 1.2e-117 427.6 428 49.8
TAR633G1256 Trochodendron aralioides HOM05D002214 ORTHO05D007367 2.9e-116 422.9 355 56.6
CSS0000146 Camellia sinensis var. sinensis HOM05D002214 ORTHO05D007367 1.1e-115 421.0 434 50.2
Cc02_g28820 Coffea canephora HOM05D002214 ORTHO05D007367 9.2e-115 417.9 512 42.8
PSO339G3363 Papaver somniferum HOM05D002214 ORTHO05D007367 3.3e-112 409.5 416 50.7
Peaxi162Scf01270g00126 Petunia axillaris HOM05D002214 ORTHO05D007367 7.3e-112 408.3 436 48.9
PSO384G3385 Papaver somniferum HOM05D002214 ORTHO05D007367 6.8e-110 401.7 419 50.1
Nitab4.5_0001244g0060 Nicotiana tabacum HOM05D002214 ORTHO05D007367 2.9e-108 396.4 417 50.1
FvH4_7g01770 Fragaria vesca HOM05D002214 ORTHO05D007367 1.9e-107 393.7 309 60.8
ECA236G0637 Erigeron canadensis HOM05D002214 ORTHO05D001664 3.5e-106 389.4 414 48.1
Ah.16g100650 Amaranthus hybridus HOM05D002214 ORTHO05D007367 3.3e-104 382.9 359 52.4
ATR0782G063 Amborella trichopoda HOM05D002214 ORTHO05D007367 7.3e-104 381.7 424 47.4
MBI03_g28525_MAGBIO Magnolia biondii HOM05D002214 ORTHO05D007367 1.1e-102 377.9 424 47.9
HPP92_021380 Vanilla planifolia HOM05D002214 ORTHO05D007367 2.0e-101 373.6 412 45.1
Dinv07431 Davidia involucrata HOM05D002214 ORTHO05D005113 3.4e-101 372.9 310 59.4
unitig_22.g5896 Utricularia gibba HOM05D002214 ORTHO05D007367 7.6e-101 371.7 425 44.0
Zm00001eb091260 Zea mays HOM05D002214 ORTHO05D007367 8.4e-100 368.2 433 42.7
QL04p010150 Quercus lobata HOM05D002214 ORTHO05D007367 4.6e-98 362.5 340 53.5
Os11g0182400 Oryza sativa ssp. japonica HOM05D002214 ORTHO05D007367 1.0e-97 361.3 403 43.4
ClCG09G004430 Citrullus lanatus HOM05D002214 ORTHO05D007367 5.1e-97 359.0 377 49.6
Aa31LG10G14890 Aethionema arabicum HOM05D002214 ORTHO05D007367 3.1e-94 349.7 241 72.2
EL10Ac2g04369 Beta vulgaris HOM05D002214 ORTHO05D007367 2.0e-93 347.1 418 43.5
Nitab4.5_0008942g0050 Nicotiana tabacum HOM05D002214 ORTHO05D007367 2.2e-92 343.6 430 45.1
Oeu051405.1 Olea europaea HOM05D002214 ORTHO05D007367 2.8e-87 326.6 311 53.4
QL04p010068 Quercus lobata HOM05D002214 ORTHO05D007367 1.2e-82 311.2 237 62.0
FAN24G1013 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.6e-82 310.8 446 43.0
FvH4_2g17890 Fragaria vesca HOM05D002214 ORTHO05D007367 3.5e-82 309.7 446 42.8
HanXRQChr04g0119861 Helianthus annuus HOM05D002214 ORTHO05D007367 3.3e-80 303.1 281 54.1
FAN24G2408 Fragaria x ananassa HOM05D002214 ORTHO05D007367 5.8e-77 292.4 445 40.4
FAN15G3441 Fragaria x ananassa HOM05D002214 ORTHO05D007367 7.6e-77 292.0 444 41.2
SalBow6G2835 Salvia bowleyana HOM05D002214 ORTHO05D007367 1.0e-76 291.6 296 51.4
FAN06G2164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 8.7e-73 278.5 238 57.1
AUR62009418 Chenopodium quinoa HOM05D002214 ORTHO05D007367 4.3e-72 276.2 409 36.9
Haze_03152 Corylus avellana HOM05D002214 ORTHO05D007367 6.3e-71 272.3 407 40.8
Haze_03149 Corylus avellana HOM05D002214 ORTHO05D007367 3.1e-70 270.0 407 40.5
FAN27G1816 Fragaria x ananassa HOM05D002214 ORTHO05D007367 9.0e-70 268.5 443 39.5
MELO3C023585.2 Cucumis melo HOM05D002214 ORTHO05D007367 3.4e-69 266.5 422 38.6
FAN27G1164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.2e-67 260.0 410 40.5
Cpa.g.sc125.50 Carica papaya HOM05D002214 ORTHO05D007367 9.7e-64 248.4 198 57.6
Cpa.g.sc125.51 Carica papaya HOM05D002214 ORTHO05D007367 2.6e-61 240.4 245 51.4
QL04p010120 Quercus lobata HOM05D002214 ORTHO05D007367 2.6e-61 240.4 205 59.5
RcHm_v2.0_Chr6g0283161 Rosa chinensis HOM05D002214 ORTHO05D007367 7.9e-58 228.8 318 45.6
AagrBONN_evm.TU.Sc2ySwM_344.2511 Anthoceros agrestis HOM05D002214 ORTHO05D007367 1.3e-52 211.5 446 29.4
COL.COLO4_12334 Corchorus olitorius HOM05D000031 ORTHO05D000030 1.4e-49 201.4 338 35.5
Pp3c8_19810 Physcomitrium patens HOM05D002214 ORTHO05D007367 2.5e-43 180.6 414 26.8
MD07G1016900 Malus domestica HOM05D002214 ORTHO05D007367 2.7e-42 177.2 223 43.5
Lj9A641T67 Lonicera japonica HOM05D002214 ORTHO05D007367 4.0e-41 173.3 283 35.3
FvH4_2g17910 Fragaria vesca HOM05D002214 ORTHO05D007367 3.4e-40 170.2 234 40.2
FAN24G3278 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.4e-40 170.2 234 40.2
Hund16632 Selenicereus undatus HOM05D002214 ORTHO05D007367 5.7e-40 169.5 164 49.4
CDE04G0429 Ceratophyllum demersum HOM05D002214 ORTHO05D007367 9.8e-40 168.7 190 41.1
Aa31LG10G14900 Aethionema arabicum HOM05D002214 ORTHO05D007367 2.2e-39 167.5 119 69.7
Hma1.2p1_0685F.1_g203270 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 2.8e-39 167.2 150 54.0
Hund16633 Selenicereus undatus HOM05D002214 ORTHO05D007367 7.7e-37 159.1 148 50.0
SMO137G0282 Selaginella moellendorffii HOM05D002214 ORTHO05D007367 4.2e-35 153.3 351 31.6
SEGI_30351 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 9.4e-35 152.1 140 50.7
CBR_g46897 Chara braunii HOM05D002214 ORTHO05D007367 8.3e-31 139.0 375 26.4
Thecc.01G405700 Theobroma cacao HOM05D002214 ORTHO05D007367 9.1e-30 135.6 102 58.8
FAN06G4994 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.7e-29 134.0 154 44.8
Thecc.01G405800 Theobroma cacao HOM05D002214 ORTHO05D007367 7.5e-24 115.9 83 66.3
Duzib133G0745 Durio zibethinus HOM05D002214 ORTHO05D007367 1.0e-20 105.5 69 63.8
SEGI_07097 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 2.9e-20 104.0 135 37.0
Oeu016638.1 Olea europaea HOM05D002214 ORTHO05D007367 1.5e-16 91.7 107 42.1
Hma1.2p1_0685F.1_g203250 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 5.0e-12 76.6 114 36.8
FAN27G0866 Fragaria x ananassa HOM05D002214 ORTHO05D007367 5.8e-08 63.2 74 40.5
Lj9C641T18 Lonicera japonica HOM05D002214 ORTHO05D007367 7.5e-08 62.8 87 39.1
AUR62022086 Chenopodium quinoa HOM05D000453 ORTHO05D000387 6.4e-07 59.7 179 21.8
CDE04G1985 Ceratophyllum demersum HOM05D002214 ORTHO05D007367 1.1e-06 58.9 54 55.6
Peaxi162Scf00015g00841 Petunia axillaris HOM05D003769 ORTHO05D004521 1.4e-06 58.5 156 27.6


User provided reference genes

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