Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 1.9e-104 382.5 188 100.0
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 1.9e-104 382.5 188 100.0
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 1.9e-104 382.5 188 100.0
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 1.2e-103 379.8 188 98.9
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 1.2e-103 379.8 188 98.9
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 2.3e-102 375.6 188 97.9
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 2.3e-102 375.6 188 97.9
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 2.3e-102 375.6 188 97.9
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 3.0e-102 375.2 188 97.9
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 1.1e-101 373.2 188 97.3
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 4.3e-101 371.3 188 96.8
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 5.7e-101 370.9 188 95.7
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 7.4e-101 370.5 188 96.3
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 7.4e-101 370.5 188 96.3
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 1.6e-100 369.4 188 95.2
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 2.4e-99 365.5 190 95.8
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 2.4e-99 365.5 190 95.8
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 2.4e-99 365.5 188 93.6
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 3.1e-99 365.2 188 94.1
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 4.1e-99 364.8 188 93.1
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 6.9e-99 364.0 188 94.7
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 4.5e-98 361.3 188 93.6
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 2.9e-97 358.6 188 93.1
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 2.0e-93 345.9 188 92.6
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 7.4e-93 344.0 188 86.2
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 2.8e-92 342.0 188 85.6
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 3.7e-92 341.7 188 86.2
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 3.7e-92 341.7 188 86.2
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 3.7e-92 341.7 188 86.2
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 3.7e-92 341.7 188 85.6
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 4.8e-92 341.3 188 86.2
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 6.3e-92 340.9 188 85.6
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 6.3e-92 340.9 188 84.6
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 6.3e-92 340.9 188 84.6
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 8.2e-92 340.5 188 86.2
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 8.2e-92 340.5 188 85.6
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 1.1e-91 340.1 188 84.6
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 1.1e-91 340.1 188 85.6
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 1.1e-91 340.1 188 86.2
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 1.1e-91 340.1 188 85.6
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 87.2
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 86.2
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 85.1
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 2.4e-91 339.0 188 85.6
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 2.4e-91 339.0 187 85.6
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 2.4e-91 339.0 188 84.6
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 3.1e-91 338.6 188 85.6
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 3.1e-91 338.6 188 85.6
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 4.1e-91 338.2 188 86.7
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 4.1e-91 338.2 188 85.1
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 5.3e-91 337.8 188 84.6
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 9.1e-91 337.0 188 85.6
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 2.0e-90 335.9 188 83.5
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 3.4e-90 335.1 188 86.2
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 4.5e-90 334.7 188 83.0
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 4.5e-90 334.7 188 83.0
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 5.9e-90 334.3 188 84.6
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 5.9e-90 334.3 188 85.6
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 1.0e-89 333.6 188 85.6
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 1.0e-89 333.6 188 85.6
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 1.3e-89 333.2 186 83.9
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 1.7e-89 332.8 188 83.5
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 2.2e-89 332.4 188 85.1
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 2.9e-89 332.0 188 85.6
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 5.0e-89 331.3 186 82.8
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 5.0e-89 331.3 186 82.8
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 8.5e-89 330.5 188 84.6
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 8.5e-89 330.5 188 84.6
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 8.5e-89 330.5 186 82.8
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 1.1e-88 330.1 188 84.6
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 1.1e-88 330.1 188 84.0
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 1.1e-88 330.1 188 84.0
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 1.1e-88 330.1 188 84.0
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 1.1e-88 330.1 188 82.4
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.4e-88 329.7 188 83.0
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 1.4e-88 329.7 186 82.8
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 1.4e-88 329.7 188 83.5
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 84.6
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 2.5e-88 328.9 188 85.1
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 2.5e-88 328.9 188 82.4
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 4.2e-88 328.2 186 82.3
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 81.4
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 9.4e-88 327.0 179 85.5
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 2.7e-87 325.5 180 86.7
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 2.7e-87 325.5 188 82.4
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 81.9
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 81.4
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 83.5
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 81.4
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 82.4
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 2.3e-86 322.4 188 83.0
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 3.0e-86 322.0 188 83.5
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 2.0e-85 319.3 188 83.0
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 2.6e-85 318.9 188 81.9
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 7.4e-85 317.4 188 80.3
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 7.4e-85 317.4 188 80.9
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 1.3e-84 316.6 188 81.4
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 1.3e-84 316.6 188 81.4
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 1.3e-84 316.6 188 81.4
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 2.2e-84 315.8 188 80.3
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 2.2e-84 315.8 188 80.9
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 2.8e-84 315.5 188 79.3
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 4.8e-84 314.7 188 80.3
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.4e-83 313.2 188 78.7
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 1.4e-83 313.2 188 78.7
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 5.3e-83 311.2 188 78.2
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 9.1e-83 310.5 188 79.3
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 1.6e-82 309.7 188 78.7
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 2.0e-82 309.3 169 85.8
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 3.5e-82 308.5 189 81.5
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 5.9e-82 307.8 189 79.4
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 5.9e-82 307.8 188 79.8
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 2.9e-81 305.4 188 79.8
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 8.5e-81 303.9 188 76.6
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 1.1e-80 303.5 189 80.4
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 1.5e-80 303.1 188 78.2
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 1.9e-80 302.8 177 86.4
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 2.5e-80 302.4 180 78.3
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 2.5e-80 302.4 188 76.1
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 4.2e-80 301.6 189 79.9
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 4.2e-80 301.6 188 77.1
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 5.5e-80 301.2 174 82.2
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 9.4e-80 300.4 189 79.4
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 1.6e-79 299.7 189 79.9
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 2.1e-79 299.3 190 77.9
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 1.4e-78 296.6 190 77.4
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 1.3e-76 290.0 188 75.5
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 8.2e-76 287.3 188 74.5
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 7.7e-74 280.8 179 76.5
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 3.8e-73 278.5 179 76.5
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 4.2e-72 275.0 188 74.5
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 5.5e-72 274.6 188 74.5
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 1.2e-71 273.5 188 67.6
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 3.6e-71 271.9 188 70.7
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 3.6e-71 271.9 188 70.7
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 8.0e-71 270.8 188 69.1
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 8.0e-71 270.8 188 68.6
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 5.2e-70 268.1 188 72.9
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 7.5e-69 264.2 189 65.6
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 3.7e-68 261.9 187 65.8
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 9.1e-67 257.3 181 70.2
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 2.0e-66 256.1 187 65.8
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 6.5e-65 251.1 187 63.6
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 4.9e-60 235.0 188 57.4
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 1.1e-59 233.8 165 72.7
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 9.2e-59 230.7 177 62.1
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 2.2e-52 209.5 188 59.6
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 5.0e-49 198.4 121 76.9
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 4.7e-47 191.8 187 50.8
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 1.1e-43 180.6 109 79.8
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 9.2e-43 177.6 115 73.9
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.5e-40 170.2 188 51.6
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.5e-40 169.5 171 55.6
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 9.5e-40 167.5 123 71.5
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 6.2e-39 164.9 85 91.8
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 1.1e-35 154.1 127 59.8
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 2.4e-30 136.3 78 82.1
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 2.0e-29 133.3 93 75.3
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 1.0e-25 120.9 64 84.4
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 7.9e-10 68.2 35 91.4
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 3.3e-08 62.8 39 74.4


User provided reference genes

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