Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32559 Brassica carinata HOM05D005207 ORTHO05D011102 1.3e-114 416.4 203 100.0
BcaC06g32380 Brassica carinata HOM05D005207 ORTHO05D011102 6.8e-76 287.7 180 77.2
C09p70110 Brassica napus HOM05D005207 ORTHO05D011102 6.8e-76 287.7 180 77.2
BolC9t59754H Brassica oleracea HOM05D005207 ORTHO05D011102 6.8e-76 287.7 180 77.2
BraA10t45015Z Brassica rapa HOM05D005207 ORTHO05D011102 3.2e-73 278.9 180 75.6
A10p29730 Brassica napus HOM05D005207 ORTHO05D011102 1.1e-62 243.8 225 57.3
C09p70090 Brassica napus HOM05D005207 ORTHO05D011102 1.8e-60 236.5 149 73.2
BolC9t59752H Brassica oleracea HOM05D005207 ORTHO05D011102 1.8e-60 236.5 149 73.2
BcaC06g32383 Brassica carinata HOM05D005207 ORTHO05D011102 2.1e-56 223.0 140 72.1
BcaC06g32555 Brassica carinata HOM05D005207 ORTHO05D011102 1.9e-54 216.5 203 57.6
BolC9t59760H Brassica oleracea HOM05D005207 ORTHO05D011102 6.4e-50 201.4 175 58.9
BraA10t45014Z Brassica rapa HOM05D005207 ORTHO05D011102 8.4e-50 201.1 180 59.4
C03p03220 Brassica napus HOM05D005207 ORTHO05D011102 8.4e-34 147.9 147 49.0
A03p02800 Brassica napus HOM05D005207 ORTHO05D011102 3.2e-33 146.0 153 49.0
A03p02820 Brassica napus HOM05D005207 ORTHO05D011102 3.2e-33 146.0 179 44.1
BraA03t09643Z Brassica rapa HOM05D005207 ORTHO05D011102 3.2e-33 146.0 153 49.0
BraA03t09645Z Brassica rapa HOM05D005207 ORTHO05D011102 3.2e-33 146.0 179 44.1
C03p02970 Brassica napus HOM05D005207 ORTHO05D011102 3.5e-32 142.5 178 43.8
BolC3t13212H Brassica oleracea HOM05D005207 ORTHO05D011102 1.0e-31 141.0 147 46.3
BcaNung06579 Brassica carinata HOM05D005207 ORTHO05D011102 1.8e-31 140.2 166 45.2
AL6G14890 Arabidopsis lyrata HOM05D005207 ORTHO05D011102 3.9e-31 139.0 152 47.4
Aa31LG8G10640 Aethionema arabicum HOM05D001653 ORTHO05D001751 1.1e-28 131.0 146 48.6
Carub.0006s0144 Capsella rubella HOM05D005207 ORTHO05D011102 1.8e-28 130.2 173 45.7
AL6G15310 Arabidopsis lyrata HOM05D005207 ORTHO05D011102 6.9e-28 128.3 173 42.8
AL3G20250 Arabidopsis lyrata HOM05D005207 ORTHO05D011102 1.2e-27 127.5 161 43.5
BcaNung06578 Brassica carinata HOM05D005207 ORTHO05D011102 1.0e-26 124.4 152 43.4
AL6G14750 Arabidopsis lyrata HOM05D005207 ORTHO05D011102 3.8e-26 122.5 162 40.1
AL6G14810 Arabidopsis lyrata HOM05D001907 ORTHO05D011102 3.8e-26 122.5 162 40.1
CARHR210960 Cardamine hirsuta HOM05D005207 ORTHO05D011102 9.3e-25 117.9 145 44.8
Carub.0006s0188 Capsella rubella HOM05D005207 ORTHO05D011102 1.0e-23 114.4 147 47.6
Aa31LG8G10630 Aethionema arabicum HOM05D001653 ORTHO05D015791 3.9e-23 112.5 147 42.9
AT5G03480 Arabidopsis thaliana HOM05D005207 ORTHO05D012773 5.7e-22 108.6 181 38.1
AT3G09160 Arabidopsis thaliana HOM05D005207 ORTHO05D011102 7.4e-22 108.2 118 46.6
Carub.0006s0189 Capsella rubella HOM05D005207 ORTHO05D011102 3.7e-21 105.9 147 44.2
BolC6t40070H Brassica oleracea HOM05D005207 ORTHO05D010629 1.2e-19 100.9 180 33.3
AL1G48230 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 4.5e-19 99.0 163 36.2
AT5G03495 Arabidopsis thaliana HOM05D005207 ORTHO05D012773 5.0e-18 95.5 183 36.6
BcaB01g04188 Brassica carinata HOM05D005207 ORTHO05D011102 3.2e-17 92.8 177 36.7
AL6G12880 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 4.2e-17 92.4 190 33.7
AL3G38420 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 5.5e-17 92.0 161 36.0
C04p59240 Brassica napus HOM05D005207 ORTHO05D010629 1.2e-16 90.9 205 30.7
BolC4t27435H Brassica oleracea HOM05D005207 ORTHO05D010629 1.2e-16 90.9 205 30.7
AL3G11550 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 4.6e-16 89.0 164 33.5
AL6G12890 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 1.0e-15 87.8 184 33.7
BcaC02g08007 Brassica carinata HOM05D005207 ORTHO05D010629 1.8e-15 87.0 170 29.4
BcaC02g08009 Brassica carinata HOM05D005207 ORTHO05D010629 1.8e-15 87.0 170 29.4
C04p59480 Brassica napus HOM05D005207 ORTHO05D010629 1.8e-15 87.0 170 29.4
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 2.3e-15 86.7 108 43.5
BraA04t17858Z Brassica rapa HOM05D005207 ORTHO05D010629 2.3e-15 86.7 170 29.4
Carub.0006s0230 Capsella rubella HOM05D005207 ORTHO05D012773 2.3e-15 86.7 154 35.7
AL4G36910 Arabidopsis lyrata HOM05D008530 ORTHO05D011436 5.1e-15 85.5 194 31.4
BcaC02g12854 Brassica carinata HOM05D005207 ORTHO05D010629 5.1e-15 85.5 175 32.0
Carub.0006s0326 Capsella rubella HOM05D005207 ORTHO05D012773 1.1e-14 84.3 176 33.0
A04p23290 Brassica napus HOM05D005207 ORTHO05D010629 1.5e-14 84.0 199 29.1
AL8G28020 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 2.0e-14 83.6 189 33.9
Carub.0006s1742 Capsella rubella HOM05D001907 ORTHO05D011102 2.0e-14 83.6 116 39.7
AL6G12910 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 5.7e-14 82.0 160 35.6
C04p59500 Brassica napus HOM05D005207 ORTHO05D010629 7.4e-14 81.6 184 28.8
AT5G53700 Arabidopsis thaliana HOM05D005207 ORTHO05D012773 1.3e-13 80.9 175 32.6
BcaC02g07482 Brassica carinata HOM05D005207 ORTHO05D010629 4.8e-13 79.0 168 30.4
BcaC02g08027 Brassica carinata HOM05D005207 ORTHO05D010629 4.8e-13 79.0 171 32.2
A03p03410 Brassica napus HOM05D000033 ORTHO05D005368 1.1e-12 77.8 144 33.3
BraA03t09691Z Brassica rapa HOM05D000033 ORTHO05D005368 1.1e-12 77.8 144 33.3
C03p03270 Brassica napus HOM05D005207 ORTHO05D016117 3.1e-12 76.3 162 29.6
BolC3t12870H Brassica oleracea HOM05D005207 ORTHO05D016117 3.1e-12 76.3 162 29.6
Thhalv10026130m.g Eutrema salsugineum HOM05D008530 ORTHO05D011436 5.3e-12 75.5 109 39.4
AL777U10010 Arabidopsis lyrata HOM05D001049 ORTHO05D012773 9.1e-12 74.7 86 41.9
A03p02860 Brassica napus HOM05D005207 ORTHO05D016117 1.2e-11 74.3 103 41.7
A09p66540 Brassica napus HOM05D005207 ORTHO05D024328 1.2e-11 74.3 89 46.1
C03p03250 Brassica napus HOM05D005207 ORTHO05D016117 1.2e-11 74.3 103 40.8
BolC3t12869H Brassica oleracea HOM05D005207 ORTHO05D016117 1.2e-11 74.3 103 40.8
BraA03t09648Z Brassica rapa HOM05D005207 ORTHO05D016117 1.2e-11 74.3 103 41.7
BraA09t41992Z Brassica rapa HOM05D005207 ORTHO05D024328 1.2e-11 74.3 89 46.1
BcaB01g06000 Brassica carinata HOM05D005207 ORTHO05D010629 1.5e-11 73.9 101 42.6
BcaC07g42014 Brassica carinata HOM05D005207 ORTHO05D024328 1.5e-11 73.9 90 44.4
C08p50700 Brassica napus HOM05D005207 ORTHO05D024328 1.5e-11 73.9 90 44.4
BolC8t52598H Brassica oleracea HOM05D005207 ORTHO05D024328 1.5e-11 73.9 90 44.4
BcaNung01579 Brassica carinata HOM05D005207 ORTHO05D010629 2.0e-11 73.6 156 28.2
A03p02850 Brassica napus HOM05D005207 ORTHO05D016117 2.0e-11 73.6 103 40.8
BraA03t09649Z Brassica rapa HOM05D005207 ORTHO05D016117 2.0e-11 73.6 103 40.8
AT5G05430 Arabidopsis thaliana HOM05D005207 ORTHO05D011102 3.4e-11 72.8 106 36.8
BcaB01g06024 Brassica carinata HOM05D005207 ORTHO05D010629 4.5e-11 72.4 126 37.3
BcaB01g06028 Brassica carinata HOM05D005207 ORTHO05D016117 4.5e-11 72.4 118 38.1
C03p03300 Brassica napus HOM05D005207 ORTHO05D016117 4.5e-11 72.4 118 38.1
BolC3t12873H Brassica oleracea HOM05D005207 ORTHO05D016117 4.5e-11 72.4 118 38.1
Carub.0008s1399 Capsella rubella HOM05D005207 ORTHO05D012773 4.5e-11 72.4 169 32.0
C04p59490 Brassica napus HOM05D005207 ORTHO05D010629 5.9e-11 72.0 147 31.3
BcaC02g08006 Brassica carinata HOM05D005207 ORTHO05D010629 7.7e-11 71.6 162 30.9
BcaC02g08008 Brassica carinata HOM05D005207 ORTHO05D010629 7.7e-11 71.6 148 31.1
C04p59510 Brassica napus HOM05D005207 ORTHO05D010629 7.7e-11 71.6 162 30.9
BolC4t27455H Brassica oleracea HOM05D005207 ORTHO05D010629 7.7e-11 71.6 162 30.9
BcaB06g28378 Brassica carinata HOM05D005207 ORTHO05D010629 1.0e-10 71.2 143 28.7
BcaB01g05240 Brassica carinata HOM05D002922 ORTHO05D024472 1.3e-10 70.9 168 31.5
BolC8t52199H Brassica oleracea HOM05D008530 ORTHO05D011436 2.2e-10 70.1 157 31.2
A04p23300 Brassica napus HOM05D005207 ORTHO05D010629 2.9e-10 69.7 144 29.9
C03p02980 Brassica napus HOM05D005207 ORTHO05D039260 3.8e-10 69.3 158 28.5
C03p09150 Brassica napus HOM05D002922 ORTHO05D024472 3.8e-10 69.3 168 31.0
BolC3t13412H Brassica oleracea HOM05D002922 ORTHO05D024472 3.8e-10 69.3 168 31.0
BcaB08g34294 Brassica carinata HOM05D008530 ORTHO05D011436 8.5e-10 68.2 134 32.8
BcaB06g28704 Brassica carinata HOM05D005207 ORTHO05D010629 2.5e-09 66.6 93 37.6
A03p07940 Brassica napus HOM05D002922 ORTHO05D024472 5.5e-09 65.5 140 30.7
AL6G12860 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 9.4e-09 64.7 112 36.6
BolC4t27457H Brassica oleracea HOM05D005207 ORTHO05D010629 9.4e-09 64.7 117 29.9
BcaB01g06006 Brassica carinata HOM05D005207 ORTHO05D010629 1.2e-08 64.3 158 27.8
A09p63050 Brassica napus HOM05D008530 ORTHO05D011436 1.2e-08 64.3 149 30.2
BraA09t41658Z Brassica rapa HOM05D008530 ORTHO05D011436 1.2e-08 64.3 149 30.2
BcaB03g13542 Brassica carinata HOM05D005207 ORTHO05D095061 1.6e-08 63.9 154 35.7
Sp1g35830 Schrenkiella parvula HOM05D002658 ORTHO05D003000 1.6e-08 63.9 74 40.5
BcaB01g06058 Brassica carinata HOM05D005207 ORTHO05D039226 2.7e-08 63.2 68 47.1
AL1G55750 Arabidopsis lyrata HOM05D002658 ORTHO05D003000 3.6e-08 62.8 87 41.4
BraA03t10119Z Brassica rapa HOM05D002922 ORTHO05D024472 3.6e-08 62.8 167 28.7
AL8G27750 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 4.7e-08 62.4 120 33.3
Thhalv10014517m.g Eutrema salsugineum HOM05D005207 ORTHO05D011436 4.7e-08 62.4 84 35.7
A09p63010 Brassica napus HOM05D008530 ORTHO05D011436 6.1e-08 62.0 92 37.0
BcaB01g06007 Brassica carinata HOM05D005207 ORTHO05D011102 7.9e-08 61.6 158 30.4
BcaB06g29180 Brassica carinata HOM05D005207 ORTHO05D010629 7.9e-08 61.6 79 46.8
C04p68620 Brassica napus HOM05D005207 ORTHO05D010629 7.9e-08 61.6 103 34.0
BolC4t28368H Brassica oleracea HOM05D005207 ORTHO05D010629 7.9e-08 61.6 103 34.0
BcaC05g26764 Brassica carinata HOM05D005207 ORTHO05D021650 1.0e-07 61.2 99 35.4
BcaB06g28876 Brassica carinata HOM05D005207 ORTHO05D010629 1.4e-07 60.8 75 48.0
Carub.0003s0820 Capsella rubella HOM05D005207 ORTHO05D012773 1.4e-07 60.8 76 43.4
Aa31LG10G5000 Aethionema arabicum HOM05D002658 ORTHO05D003000 2.3e-07 60.1 74 36.5
BraA08t32458Z Brassica rapa HOM05D002658 ORTHO05D003000 2.3e-07 60.1 77 35.1
BolC4t27454H Brassica oleracea HOM05D007694 ORTHO05D041000 3.0e-07 59.7 88 35.2
Ah.01g012180 Amaranthus hybridus HOM05D002658 ORTHO05D003000 3.9e-07 59.3 143 26.6
A05p20830 Brassica napus HOM05D002658 ORTHO05D003000 3.9e-07 59.3 76 38.2
BraA05t20989Z Brassica rapa HOM05D002658 ORTHO05D003000 3.9e-07 59.3 76 38.2
CARHR038910 Cardamine hirsuta HOM05D002658 ORTHO05D003000 3.9e-07 59.3 88 37.5
Lalb_Chr01g0001461 Lupinus albus HOM05D002658 ORTHO05D003000 3.9e-07 59.3 127 29.9
C08p04580 Brassica napus HOM05D002658 ORTHO05D003000 5.1e-07 58.9 77 35.1
BcaB02g11292 Brassica carinata HOM05D002658 ORTHO05D003000 8.8e-07 58.2 74 39.2
BcaC05g26761 Brassica carinata HOM05D005207 ORTHO05D021650 8.8e-07 58.2 92 34.8
BcaC05g27545 Brassica carinata HOM05D002658 ORTHO05D003000 8.8e-07 58.2 74 36.5
C05p35300 Brassica napus HOM05D002658 ORTHO05D003000 8.8e-07 58.2 74 36.5
BolC5t32244H Brassica oleracea HOM05D002658 ORTHO05D003000 8.8e-07 58.2 74 36.5
BcaB06g28377 Brassica carinata HOM05D005207 ORTHO05D010629 1.1e-06 57.8 158 32.9
Potri.007G071100 Populus trichocarpa HOM05D002658 ORTHO05D003000 1.1e-06 57.8 125 30.4
AT1G48920 Arabidopsis thaliana HOM05D002658 ORTHO05D003000 1.5e-06 57.4 85 40.0
BcaB01g05983 Brassica carinata HOM05D005207 ORTHO05D039260 1.5e-06 57.4 85 40.0
AL1G25630 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 2.0e-06 57.0 77 40.3
AL5G22900 Arabidopsis lyrata HOM05D025973 ORTHO05D012773 2.0e-06 57.0 68 44.1
Sabra07G0059800 Salix brachista HOM05D002658 ORTHO05D003000 2.6e-06 56.6 122 31.1
Carub.0001s3809 Capsella rubella HOM05D002658 ORTHO05D003000 3.3e-06 56.2 83 36.1
Carub.0006s2942 Capsella rubella HOM05D008043 ORTHO05D010395 3.3e-06 56.2 101 34.7
BcaC08g47263 Brassica carinata HOM05D005207 ORTHO05D010629 4.4e-06 55.8 60 38.3
BcaC08g47266 Brassica carinata HOM05D005207 ORTHO05D010629 4.4e-06 55.8 60 38.3
C06p50330 Brassica napus HOM05D005207 ORTHO05D010629 4.4e-06 55.8 60 38.3
C06p50380 Brassica napus HOM05D005207 ORTHO05D010629 4.4e-06 55.8 60 38.3
C06p50420 Brassica napus HOM05D005207 ORTHO05D010629 4.4e-06 55.8 60 38.3
CARHR064230 Cardamine hirsuta HOM05D005207 ORTHO05D010629 4.4e-06 55.8 127 35.4
Thhalv10020940m.g Eutrema salsugineum HOM05D002658 ORTHO05D003000 4.4e-06 55.8 122 32.8
Os04g0620700 Oryza sativa ssp. japonica HOM05D002658 ORTHO05D003000 4.4e-06 55.8 132 25.8
Phvul.011G030600 Phaseolus vulgaris HOM05D002658 ORTHO05D003000 4.4e-06 55.8 128 25.8
TAR629G2145 Trochodendron aralioides HOM05D002658 ORTHO05D003000 4.4e-06 55.8 122 31.1
TAR629G3397 Trochodendron aralioides HOM05D002658 ORTHO05D003000 4.4e-06 55.8 122 31.1
A08p04310 Brassica napus HOM05D002658 ORTHO05D003000 5.7e-06 55.5 87 31.0
BraA09t42032Z Brassica rapa HOM05D002922 ORTHO05D017209 5.7e-06 55.5 81 38.3
QL03p044151 Quercus lobata HOM05D002658 ORTHO05D003000 5.7e-06 55.5 144 29.2
C06p50450 Brassica napus HOM05D005207 ORTHO05D010629 7.4e-06 55.1 61 37.7
Thhalv10021355m.g Eutrema salsugineum HOM05D005207 ORTHO05D021650 7.4e-06 55.1 106 33.0
SGA_v2.0_scaffold99G29460 Striga asiatica HOM05D002658 ORTHO05D003000 9.7e-06 54.7 136 29.4
Zm00001eb046260 Zea mays HOM05D002658 ORTHO05D003000 9.7e-06 54.7 183 26.2


User provided reference genes

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