Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32384 Brassica carinata HOM05D004581 ORTHO05D024356 4.2e-72 274.6 144 100.0
A10p29710 Brassica napus HOM05D004581 ORTHO05D006211 1.6e-63 246.1 155 87.1
BraA10t45012Z Brassica rapa HOM05D004581 ORTHO05D006211 1.6e-63 246.1 155 87.1
Sp6g36190 Schrenkiella parvula HOM05D004581 ORTHO05D006211 6.1e-63 244.2 155 85.8
Thhalv10012676m.g Eutrema salsugineum HOM05D004581 ORTHO05D006211 1.8e-62 242.7 155 85.2
BcaC06g32554 Brassica carinata HOM05D004581 ORTHO05D006211 3.0e-62 241.9 155 84.5
BcaB05g21654 Brassica carinata HOM05D004581 ORTHO05D006211 5.2e-62 241.1 155 85.2
BraA02t04889Z Brassica rapa HOM05D004581 ORTHO05D006211 2.2e-60 235.7 156 83.3
C02p02810 Brassica napus HOM05D004581 ORTHO05D006211 4.9e-60 234.6 156 82.7
BolC2t06246H Brassica oleracea HOM05D004581 ORTHO05D006211 4.9e-60 234.6 156 82.7
CARHR206520 Cardamine hirsuta HOM05D004581 ORTHO05D006211 3.8e-57 224.9 151 80.8
AT5G06680 Arabidopsis thaliana HOM05D004581 ORTHO05D006211 1.9e-56 222.6 151 78.8
Carub.0006s0556 Capsella rubella HOM05D004581 ORTHO05D006211 5.6e-56 221.1 151 78.1
AL6G16770 Arabidopsis lyrata HOM05D004581 ORTHO05D006211 7.3e-56 220.7 151 78.1
THA.LOC104809935 Tarenaya hassleriana HOM05D004581 ORTHO05D006211 5.8e-53 211.1 151 76.2
Aa31sc40G20 Aethionema arabicum HOM05D004581 ORTHO05D006211 7.5e-53 210.7 151 74.8
C09p70080 Brassica napus HOM05D004581 ORTHO05D006211 7.0e-43 177.6 92 100.0
BolC9t59751H Brassica oleracea HOM05D004581 ORTHO05D006211 1.6e-42 176.4 92 98.9
COL.COLO4_29354 Corchorus olitorius HOM05D004581 ORTHO05D006211 2.3e-41 172.6 158 60.8
Cfa020147 Carpinus fangiana HOM05D004581 ORTHO05D006211 1.5e-40 169.9 157 63.7
CSS0001135 Camellia sinensis var. sinensis HOM05D004581 ORTHO05D006211 1.9e-40 169.5 156 60.3
Haze_20018 Corylus avellana HOM05D004581 ORTHO05D006211 1.9e-40 169.5 157 63.1
CANSAT64G2519 Cannabis sativa HOM05D004581 ORTHO05D006211 3.3e-40 168.7 162 59.9
Thecc.05G174500 Theobroma cacao HOM05D004581 ORTHO05D006211 3.3e-40 168.7 159 60.4
PGR142G1146 Punica granatum HOM05D004581 ORTHO05D006211 5.6e-40 167.9 158 61.4
TWI53G1098 Tripterygium wilfordii HOM05D004581 ORTHO05D006211 5.6e-40 167.9 154 63.0
vmacro07891 Vaccinium macrocarpon HOM05D004581 ORTHO05D006211 5.6e-40 167.9 160 57.5
TWI77G0968 Tripterygium wilfordii HOM05D004581 ORTHO05D006211 7.3e-40 167.5 154 63.0
Potri.016G059900 Populus trichocarpa HOM05D004581 ORTHO05D006211 9.5e-40 167.2 159 58.5
Rhsim03G0004600 Rhododendron simsii HOM05D004581 ORTHO05D006211 9.5e-40 167.2 156 59.0
SalBow6G0811 Salvia bowleyana HOM05D004581 ORTHO05D006211 2.1e-39 166.0 163 58.9
Duzib093G1426 Durio zibethinus HOM05D004581 ORTHO05D006211 2.8e-39 165.6 159 59.1
GSVIVG01033474001 Vitis vinifera HOM05D004581 ORTHO05D006211 3.6e-39 165.2 159 59.7
Dinv16368 Davidia involucrata HOM05D004581 ORTHO05D006211 4.7e-39 164.9 159 58.5
QL07p024331 Quercus lobata HOM05D004581 ORTHO05D006211 4.7e-39 164.9 157 61.1
QL07p024348 Quercus lobata HOM05D004581 ORTHO05D006211 4.7e-39 164.9 157 61.1
QL07p024412 Quercus lobata HOM05D004581 ORTHO05D006211 4.7e-39 164.9 157 61.1
Sed0021834 Sechium edule HOM05D004581 ORTHO05D006211 4.7e-39 164.9 153 61.4
Gohir.D04G089200 Gossypium hirsutum HOM05D004581 ORTHO05D006211 6.2e-39 164.5 159 59.1
Gorai.012G099300 Gossypium raimondii HOM05D004581 ORTHO05D006211 6.2e-39 164.5 159 59.1
Manes.09G037300 Manihot esculenta HOM05D004581 ORTHO05D006211 8.1e-39 164.1 159 58.5
PSO339G4020 Papaver somniferum HOM05D004581 ORTHO05D006211 8.1e-39 164.1 158 60.8
PSO384G2020 Papaver somniferum HOM05D004581 ORTHO05D006211 8.1e-39 164.1 158 60.8
Eucgr.K01849 Eucalyptus grandis HOM05D004581 ORTHO05D006211 1.1e-38 163.7 156 62.2
Aqoxy1G00145 Aquilegia oxysepala HOM05D004581 ORTHO05D006211 1.4e-38 163.3 161 58.4
MELO3C009016.2 Cucumis melo HOM05D004581 ORTHO05D006211 2.3e-38 162.5 157 59.9
Gohir.A04G057400 Gossypium hirsutum HOM05D004581 ORTHO05D006211 2.3e-38 162.5 159 59.1
HanXRQChr01g0010041 Helianthus annuus HOM05D004581 ORTHO05D006211 2.3e-38 162.5 149 59.7
CsaV3_4G031280 Cucumis sativus L. HOM05D004581 ORTHO05D006211 5.2e-38 161.4 157 59.2
Sabra16G0062700 Salix brachista HOM05D004581 ORTHO05D006211 5.2e-38 161.4 158 58.2
Atru.chr8.1150 Acer truncatum HOM05D004581 ORTHO05D006211 6.8e-38 161.0 159 59.1
Hund19211 Selenicereus undatus HOM05D004581 ORTHO05D006211 6.8e-38 161.0 151 59.6
MD12G1055200 Malus domestica HOM05D004581 ORTHO05D006211 8.9e-38 160.6 159 57.2
ClCG04G001070 Citrullus lanatus HOM05D004581 ORTHO05D006211 1.2e-37 160.2 157 59.2
Cc06_g15670 Coffea canephora HOM05D004581 ORTHO05D006211 1.2e-37 160.2 161 57.1
MD14G1054400 Malus domestica HOM05D004581 ORTHO05D006211 1.2e-37 160.2 158 58.2
CiPaw.10G025500 Carya illinoinensis HOM05D004581 ORTHO05D006211 2.0e-37 159.5 156 59.6
DCAR_013660 Daucus carota HOM05D004581 ORTHO05D006211 2.0e-37 159.5 155 58.1
Prupe.7G080400 Prunus persica HOM05D004581 ORTHO05D006211 2.0e-37 159.5 157 58.6
Sabra06G0149000 Salix brachista HOM05D004581 ORTHO05D006211 2.0e-37 159.5 158 58.9
RcHm_v2.0_Chr3g0479271 Rosa chinensis HOM05D004581 ORTHO05D006211 2.6e-37 159.1 158 58.2
CAN.G824.31 Capsicum annuum HOM05D004581 ORTHO05D006211 3.4e-37 158.7 150 59.3
Ciclev10011052m.g Citrus clementina HOM05D004581 ORTHO05D006211 3.4e-37 158.7 158 58.9
TAR623G0668 Trochodendron aralioides HOM05D004581 ORTHO05D006211 3.4e-37 158.7 158 58.9
FAN02G3358 Fragaria x ananassa HOM05D004581 ORTHO05D006211 4.4e-37 158.3 159 57.2
FAN05G2417 Fragaria x ananassa HOM05D004581 ORTHO05D006211 4.4e-37 158.3 159 57.9
FAN14G2436 Fragaria x ananassa HOM05D004581 ORTHO05D006211 4.4e-37 158.3 159 58.5
Nn7g35977 Nelumbo nucifera HOM05D004581 ORTHO05D006211 4.4e-37 158.3 155 58.7
Potri.006G194200 Populus trichocarpa HOM05D004581 ORTHO05D006211 5.8e-37 157.9 157 58.6
Ah.13g075710 Amaranthus hybridus HOM05D004581 ORTHO05D006211 7.5e-37 157.5 154 57.1
Lju124A23G70 Lonicera japonica HOM05D004581 ORTHO05D006211 7.5e-37 157.5 157 58.0
Nitab4.5_0000663g0140 Nicotiana tabacum HOM05D004581 ORTHO05D006211 9.9e-37 157.1 156 57.1
Nitab4.5_0006360g0040 Nicotiana tabacum HOM05D004581 ORTHO05D006211 9.9e-37 157.1 156 57.1
FvH4_6g21970 Fragaria vesca HOM05D004581 ORTHO05D006211 1.3e-36 156.8 159 57.9
Medtr7g093560 Medicago truncatula HOM05D004581 ORTHO05D006211 1.3e-36 156.8 158 56.3
Solyc09g009140.3 Solanum lycopersicum HOM05D004581 ORTHO05D006211 1.7e-36 156.4 158 57.0
Sopen09g003860 Solanum pennellii HOM05D004581 ORTHO05D006211 1.7e-36 156.4 158 56.3
PGSC0003DMG400002716 Solanum tuberosum HOM05D004581 ORTHO05D006211 1.7e-36 156.4 158 56.3
Glyma.03G146200 Glycine max HOM05D004581 ORTHO05D006211 2.2e-36 156.0 160 58.1
EL10Ac2g03990 Beta vulgaris HOM05D004581 ORTHO05D006211 3.7e-36 155.2 153 56.9
Migut.J01852 Erythranthe guttata HOM05D004581 ORTHO05D006211 3.7e-36 155.2 155 56.1
Glyma.19G149500 Glycine max HOM05D004581 ORTHO05D006211 3.7e-36 155.2 160 58.1
ATR0598G264 Amborella trichopoda HOM05D004581 ORTHO05D006211 4.9e-36 154.8 151 58.9
Lsat_1_v5_gn_5_165321 Lactuca sativa HOM05D004581 ORTHO05D006211 4.9e-36 154.8 151 58.9
Lj1g0024119 Lotus japonicus HOM05D004581 ORTHO05D006211 4.9e-36 154.8 158 56.3
TAR369G0383 Trochodendron aralioides HOM05D004581 ORTHO05D006211 4.9e-36 154.8 159 56.6
Zm00001eb314430 Zea mays HOM05D004581 ORTHO05D006211 1.9e-35 152.9 147 55.8
Ca_08535_v3 Cicer arietinum L. HOM05D004581 ORTHO05D006211 2.4e-35 152.5 158 56.3
TPR.G35787 Trifolium pratense HOM05D004581 ORTHO05D006211 3.2e-35 152.1 158 56.3
VMungo1383G1342 Vigna mungo HOM05D004581 ORTHO05D006211 5.4e-35 151.4 160 56.2
MSTRG.19916 Avicennia marina HOM05D004581 ORTHO05D006211 7.1e-35 151.0 156 56.4
Phvul.001G144000 Phaseolus vulgaris HOM05D004581 ORTHO05D006211 1.2e-34 150.2 160 56.9
Lalb_Chr18g0048011 Lupinus albus HOM05D004581 ORTHO05D006211 2.1e-34 149.4 161 54.7
MBI19_g17421_MAGBIO Magnolia biondii HOM05D004581 ORTHO05D006211 2.7e-34 149.1 156 59.0
Psat3g067160 Pisum sativum HOM05D004581 ORTHO05D006211 2.7e-34 149.1 158 53.2
Sc25g0005070 Simmondsia chinensis HOM05D004581 ORTHO05D006211 4.6e-34 148.3 154 54.5
SGA_v2.0_scaffold105G30506 Striga asiatica HOM05D004581 ORTHO05D006211 3.9e-33 145.2 156 54.5
arahy.Tifrunner.gnm1.ann1.6E61XV Arachis hypogaea HOM05D004581 ORTHO05D006211 6.6e-33 144.4 147 55.1
arahy.Tifrunner.gnm1.ann1.U2Q4B5 Arachis hypogaea HOM05D004581 ORTHO05D006211 1.5e-32 143.3 147 54.4
Os09g0446200 Oryza sativa ssp. japonica HOM05D004581 ORTHO05D006211 3.3e-32 142.1 149 54.4
unitig_0.g528 Utricularia gibba HOM05D004581 ORTHO05D006211 7.3e-32 141.0 154 52.6
SHI31781 Sapria himalayana HOM05D004581 ORTHO05D006211 4.7e-31 138.3 157 51.6
Peaxi162Scf00169g01812 Petunia axillaris HOM05D004581 ORTHO05D006211 1.2e-29 133.7 142 53.5
ECA247G1565 Erigeron canadensis HOM05D004581 ORTHO05D006211 1.5e-29 133.3 149 49.0
ECA248G3562 Erigeron canadensis HOM05D004581 ORTHO05D006211 7.6e-29 131.0 143 51.7
Actinidia14375 Actinidia chinensis HOM05D004581 ORTHO05D006211 2.2e-28 129.4 132 56.1
Actinidia22051 Actinidia chinensis HOM05D004581 ORTHO05D006211 2.9e-28 129.0 132 56.1
AagrBONN_evm.TU.Sc2ySwM_344.2102 Anthoceros agrestis HOM05D004581 ORTHO05D006211 3.2e-27 125.6 144 51.4
AUR62015335 Chenopodium quinoa HOM05D004581 ORTHO05D006211 3.2e-27 125.6 129 57.4
HanXRQChr15g0491321 Helianthus annuus HOM05D004581 ORTHO05D006211 5.4e-27 124.8 147 50.3
Duzib106G1052 Durio zibethinus HOM05D004581 ORTHO05D006211 9.2e-27 124.0 118 58.5
Mapoly0001s0406 Marchantia polymorpha HOM05D004581 ORTHO05D006211 6.0e-26 121.3 149 49.7
Pp3c20_16750 Physcomitrium patens HOM05D004581 ORTHO05D006211 6.0e-26 121.3 149 49.0
Lsat_1_v5_gn_9_26020 Lactuca sativa HOM05D004581 ORTHO05D006211 2.3e-25 119.4 127 50.4
SMO356G0383 Selaginella moellendorffii HOM05D004581 ORTHO05D006211 2.3e-25 119.4 146 49.3
Pp3c24_16220 Physcomitrium patens HOM05D004581 ORTHO05D006211 3.0e-25 119.0 149 49.0
CBR_g7989 Chara braunii HOM05D004581 ORTHO05D006211 1.1e-22 110.5 154 45.5
CiPaw.09G028800 Carya illinoinensis HOM05D004581 ORTHO05D006211 2.2e-20 102.8 65 81.5
Pp3c8_15910 Physcomitrium patens HOM05D004581 ORTHO05D006211 6.4e-20 101.3 150 43.3
MCO03G564 Micromonas commoda HOM05D004581 ORTHO05D006211 8.4e-20 100.9 150 42.7
Actinidia14374 Actinidia chinensis HOM05D004581 ORTHO05D006211 3.5e-18 95.5 73 68.5
CDE04G2925 Ceratophyllum demersum HOM05D004581 ORTHO05D006211 2.3e-17 92.8 130 43.8
HPP92_028666 Vanilla planifolia HOM05D004581 ORTHO05D006211 5.6e-16 88.2 91 54.9
Cpa.g.sc85.62 Carica papaya HOM05D004581 ORTHO05D006211 5.8e-13 78.2 103 45.6
HPP92_028616 Vanilla planifolia HOM05D004581 ORTHO05D024356 1.4e-11 73.6 57 68.4
Zm00001eb065490 Zea mays HOM05D004581 ORTHO05D024356 1.6e-07 60.1 71 46.5
Zm00001eb115360 Zea mays HOM05D004581 ORTHO05D024356 1.6e-07 60.1 71 46.5
Zm00001eb199010 Zea mays HOM05D004581 ORTHO05D024356 1.6e-07 60.1 71 46.5


User provided reference genes

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