Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 2.2e-41 171.8 82 100.0
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 5.1e-38 160.6 77 100.0
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 5.1e-38 160.6 77 100.0
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 5.1e-38 160.6 77 100.0
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 5.1e-38 160.6 77 100.0
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 5.1e-38 160.6 77 100.0
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 5.1e-38 160.6 77 100.0
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 5.1e-38 160.6 77 100.0
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 1.1e-37 159.5 77 98.7
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 4.8e-36 154.1 77 94.8
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 2.4e-35 151.8 77 92.2
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 6.9e-35 150.2 76 93.4
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 5.8e-34 147.1 77 90.9
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 4.9e-33 144.1 77 89.6
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 4.6e-31 137.5 77 81.8
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 1.3e-30 136.0 76 82.9
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 1.2e-26 122.9 77 71.4
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 1.2e-26 122.9 77 68.8
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 2.6e-26 121.7 77 70.1
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 3.4e-26 121.3 77 71.4
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 3.4e-26 121.3 77 71.4
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 4.5e-26 120.9 75 73.3
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 4.5e-26 120.9 77 71.4
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 4.5e-26 120.9 77 71.4
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 5.8e-26 120.6 77 71.4
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 5.8e-26 120.6 76 71.1
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 9.9e-26 119.8 75 72.0
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 1.3e-25 119.4 77 70.1
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 1.3e-25 119.4 77 70.1
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 1.7e-25 119.0 75 65.3
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 1.7e-25 119.0 77 67.5
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 2.2e-25 118.6 75 70.7
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 2.2e-25 118.6 75 68.0
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 2.2e-25 118.6 76 71.1
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 2.9e-25 118.2 77 68.8
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 2.9e-25 118.2 75 70.7
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 2.9e-25 118.2 77 71.4
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 3.8e-25 117.9 77 70.1
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 3.8e-25 117.9 78 70.5
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 4.9e-25 117.5 77 68.8
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 4.9e-25 117.5 77 67.5
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 4.9e-25 117.5 75 69.3
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 6.4e-25 117.1 75 66.7
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 1.1e-24 116.3 77 64.9
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 1.4e-24 115.9 77 63.6
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 1.4e-24 115.9 77 66.2
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 1.4e-24 115.9 75 65.3
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 1.9e-24 115.5 77 71.4
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 1.9e-24 115.5 77 63.6
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 1.9e-24 115.5 77 67.5
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 2.4e-24 115.2 77 64.9
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 3.2e-24 114.8 77 67.5
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 4.2e-24 114.4 73 67.1
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 4.2e-24 114.4 77 63.6
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 4.2e-24 114.4 75 66.7
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 4.2e-24 114.4 75 65.3
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 5.4e-24 114.0 77 66.2
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 5.4e-24 114.0 75 66.7
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 7.1e-24 113.6 75 65.3
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 7.1e-24 113.6 75 65.3
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 9.3e-24 113.2 75 65.3
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 9.3e-24 113.2 75 66.7
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 1.6e-23 112.5 72 68.1
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 2.7e-23 111.7 77 63.6
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 2.7e-23 111.7 77 64.9
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 2.7e-23 111.7 77 64.9
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 2.7e-23 111.7 77 64.9
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 3.5e-23 111.3 77 62.3
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 3.5e-23 111.3 77 63.6
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 4.6e-23 110.9 77 63.6
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 6.0e-23 110.5 77 68.8
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 6.0e-23 110.5 77 63.6
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 6.0e-23 110.5 77 64.9
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 7.9e-23 110.2 75 66.7
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 1.3e-22 109.4 77 64.9
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 1.3e-22 109.4 77 62.3
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 1.8e-22 109.0 77 63.6
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 2.3e-22 108.6 75 64.0
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 3.0e-22 108.2 75 62.7
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 3.0e-22 108.2 75 62.7
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 3.0e-22 108.2 77 62.3
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 3.0e-22 108.2 75 64.0
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 3.0e-22 108.2 75 64.0
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 3.0e-22 108.2 77 62.3
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 3.9e-22 107.8 75 65.3
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 3.9e-22 107.8 75 64.0
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 3.9e-22 107.8 77 61.0
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 6.7e-22 107.1 75 64.0
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 8.7e-22 106.7 75 65.3
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 1.1e-21 106.3 74 67.6
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 1.1e-21 106.3 73 67.1
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 1.1e-21 106.3 73 60.3
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 1.9e-21 105.5 72 66.7
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 7.4e-21 103.6 72 65.3
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 7.4e-21 103.6 72 65.3
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 7.4e-21 103.6 72 65.3
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 9.6e-21 103.2 77 61.0
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 1.3e-20 102.8 75 60.0
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 1.3e-20 102.8 77 62.3
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 1.6e-20 102.4 55 89.1
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 1.6e-20 102.4 77 63.6
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 1.6e-20 102.4 77 63.6
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 2.8e-20 101.7 73 63.0
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 6.2e-20 100.5 78 59.0
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 6.2e-20 100.5 77 63.6
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 1.1e-19 99.8 73 61.6
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 1.1e-19 99.8 66 71.2
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 1.1e-19 99.8 75 57.3
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 1.4e-19 99.4 61 73.8
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 1.4e-19 99.4 74 59.5
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 2.4e-19 98.6 75 57.3
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 6.9e-19 97.1 60 68.3
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 6.9e-19 97.1 77 58.4
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 1.5e-18 95.9 76 59.2
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 2.0e-18 95.5 72 58.3
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 2.6e-18 95.1 74 59.5
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 3.4e-18 94.7 74 59.5
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 4.5e-18 94.4 76 53.9
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 7.6e-18 93.6 76 50.0
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 1.7e-17 92.4 76 56.6
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 2.9e-17 91.7 76 55.3
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 2.9e-17 91.7 60 70.0
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 4.9e-17 90.9 61 63.9
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 1.1e-16 89.7 61 63.9
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 4.2e-16 87.8 76 52.6
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 1.8e-14 82.4 72 51.4
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 1.5e-13 79.3 61 62.3
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 1.9e-13 79.0 76 48.7
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 2.5e-13 78.6 88 47.7
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 2.5e-13 78.6 64 56.2
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 4.3e-13 77.8 62 61.3
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 1.2e-10 69.7 75 44.0
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 1.5e-10 69.3 61 54.1
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 3.4e-10 68.2 76 42.1
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 5.8e-10 67.4 75 40.0
SalBow3G2087 Salvia bowleyana HOM05D004585 ORTHO05D005640 2.9e-09 65.1 42 66.7
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 3.8e-09 64.7 55 58.2
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 3.5e-07 58.2 43 58.1
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 6.1e-07 57.4 24 95.8
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 3.9e-06 54.7 76 34.2


User provided reference genes

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