Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32096 Brassica carinata HOM05D000068 ORTHO05D009371 9.6e-204 713.4 389 100.0
A10p32200 Brassica napus HOM05D000068 ORTHO05D009371 8.8e-181 637.1 394 91.4
BraA10t45263Z Brassica rapa HOM05D000068 ORTHO05D009371 8.8e-181 637.1 394 91.4
BolC9t60035H Brassica oleracea HOM05D000068 ORTHO05D009371 2.2e-179 632.5 394 90.4
C09p73000 Brassica napus HOM05D000068 ORTHO05D009371 2.4e-178 629.0 394 90.9
Sp6g38810 Schrenkiella parvula HOM05D000068 ORTHO05D009371 2.1e-174 615.9 395 88.1
Thhalv10012955m.g Eutrema salsugineum HOM05D000068 ORTHO05D009371 3.3e-172 608.6 395 87.8
CARHR209340 Cardamine hirsuta HOM05D000068 ORTHO05D009371 5.4e-154 548.1 395 77.5
AT5G03910 Arabidopsis thaliana HOM05D000068 ORTHO05D009371 4.0e-149 531.9 373 80.4
AL6G13500 Arabidopsis lyrata HOM05D000068 ORTHO05D009371 2.6e-148 529.3 374 79.7
BcaC03g12973 Brassica carinata HOM05D000068 ORTHO05D009371 3.2e-146 522.3 386 79.8
Aa31LG1G21360 Aethionema arabicum HOM05D001354 ORTHO05D007486 1.9e-143 513.1 343 81.0
THA.LOC104816394 Tarenaya hassleriana HOM05D000068 ORTHO05D009371 2.5e-135 486.1 403 68.2
Carub.0006s0287 Capsella rubella HOM05D000068 ORTHO05D009371 1.3e-115 420.6 259 87.6
Cpa.g.sc5.7 Carica papaya HOM05D000068 ORTHO05D009371 5.4e-114 415.2 382 60.2
Lj2A138T48 Lonicera japonica HOM05D000068 ORTHO05D009371 2.5e-111 406.4 359 60.4
GSVIVG01033860001 Vitis vinifera HOM05D000068 ORTHO05D009371 1.3e-110 404.1 390 56.4
Atru.chr8.1483 Acer truncatum HOM05D000068 ORTHO05D009371 6.2e-110 401.7 382 59.2
Sabra06G0163200 Salix brachista HOM05D000068 ORTHO05D009371 4.4e-108 395.6 332 60.5
Potri.006G211700 Populus trichocarpa HOM05D000068 ORTHO05D009371 1.3e-107 394.0 341 60.1
Nn6g34878 Nelumbo nucifera HOM05D000068 ORTHO05D009371 4.9e-107 392.1 398 54.3
COL.COLO4_29711 Corchorus olitorius HOM05D000068 ORTHO05D009371 1.4e-106 390.6 402 57.0
Duzib093G0600 Durio zibethinus HOM05D000068 ORTHO05D009371 7.1e-106 388.3 346 60.4
Actinidia05420 Actinidia chinensis HOM05D000068 ORTHO05D009371 1.7e-104 383.6 354 56.8
Gohir.D04G098800 Gossypium hirsutum HOM05D000068 ORTHO05D009371 1.7e-104 383.6 358 58.1
Manes.08G026400 Manihot esculenta HOM05D000068 ORTHO05D009371 2.3e-104 383.3 378 55.6
TAR633G0063 Trochodendron aralioides HOM05D000068 ORTHO05D009371 2.3e-104 383.3 345 57.7
Ciclev10013660m.g Citrus clementina HOM05D000068 ORTHO05D009371 3.0e-104 382.9 360 56.4
Gorai.009G401200 Gossypium raimondii HOM05D000068 ORTHO05D009371 8.7e-104 381.3 358 57.8
FvH4_6g19080 Fragaria vesca HOM05D000068 ORTHO05D009371 1.1e-103 380.9 385 54.3
FAN14G4825 Fragaria x ananassa HOM05D000068 ORTHO05D009371 1.1e-103 380.9 385 54.3
RcHm_v2.0_Chr3g0474121 Rosa chinensis HOM05D000068 ORTHO05D009371 1.1e-103 380.9 385 54.5
FAN02G2951 Fragaria x ananassa HOM05D000068 ORTHO05D009371 4.3e-103 379.0 388 54.1
FAN14G1721 Fragaria x ananassa HOM05D000068 ORTHO05D009371 4.3e-103 379.0 388 54.1
PSO339G3788 Papaver somniferum HOM05D000068 ORTHO05D009371 7.3e-103 378.3 353 55.0
QL07p038656 Quercus lobata HOM05D000068 ORTHO05D009371 9.6e-103 377.9 375 54.4
PSO384G0401 Papaver somniferum HOM05D000068 ORTHO05D009371 3.6e-102 375.9 335 56.7
TWI77G0227 Tripterygium wilfordii HOM05D000068 ORTHO05D009371 2.4e-101 373.2 338 57.7
PGR004G2595 Punica granatum HOM05D000068 ORTHO05D009371 4.0e-101 372.5 385 54.0
FAN14G1829 Fragaria x ananassa HOM05D000068 ORTHO05D009371 5.3e-101 372.1 372 55.4
Hund19921 Selenicereus undatus HOM05D000068 ORTHO05D009371 1.5e-100 370.5 338 58.3
Aqoxy2G01127_Aqoxy2G01128 Aquilegia oxysepala HOM05D000068 ORTHO05D009371 2.0e-100 370.2 335 57.3
Prupe.7G104700 Prunus persica HOM05D000068 ORTHO05D009371 2.6e-100 369.8 391 52.7
ClCG10G018880 Citrullus lanatus HOM05D000068 ORTHO05D009371 3.4e-100 369.4 400 52.2
PGSC0003DMG401008875 Solanum tuberosum HOM05D000068 ORTHO05D009371 3.4e-100 369.4 378 52.9
Gohir.A04G062000 Gossypium hirsutum HOM05D000068 ORTHO05D009371 4.5e-100 369.0 371 55.5
CAN.G397.62 Capsicum annuum HOM05D000068 ORTHO05D009371 1.3e-99 367.5 389 52.4
MELO3C009480.2 Cucumis melo HOM05D000068 ORTHO05D009371 1.3e-99 367.5 398 52.5
Solyc09g009910.4 Solanum lycopersicum HOM05D000068 ORTHO05D009371 4.9e-99 365.5 378 52.4
CsaV3_3G037360 Cucumis sativus L. HOM05D000068 ORTHO05D009371 6.4e-99 365.2 331 58.0
CiPaw.10G010800 Carya illinoinensis HOM05D000068 ORTHO05D009371 8.4e-99 364.8 391 50.9
Migut.J01023 Erythranthe guttata HOM05D000068 ORTHO05D009371 1.9e-98 363.6 389 52.7
Sopen09g004660 Solanum pennellii HOM05D000068 ORTHO05D009371 1.9e-98 363.6 378 52.6
Haze_19627 Corylus avellana HOM05D000068 ORTHO05D009371 5.4e-98 362.1 399 51.1
Rhsim03G0074500 Rhododendron simsii HOM05D000068 ORTHO05D009371 9.3e-98 361.3 405 51.1
Cc06_g05950 Coffea canephora HOM05D000068 ORTHO05D009371 1.6e-97 360.5 388 52.3
vmacro07417 Vaccinium macrocarpon HOM05D000068 ORTHO05D009371 2.1e-97 360.1 414 51.0
Lsat_1_v5_gn_5_165121 Lactuca sativa HOM05D000068 ORTHO05D009371 1.8e-96 357.1 383 53.8
Peaxi162Scf00404g00221 Petunia axillaris HOM05D000068 ORTHO05D009371 2.3e-96 356.7 377 53.6
EL10Ac7g16904 Beta vulgaris HOM05D000068 ORTHO05D009371 3.9e-96 355.9 334 56.9
Sc02g0000310 Simmondsia chinensis HOM05D000068 ORTHO05D009371 3.9e-96 355.9 375 53.6
Oeu047858.1 Olea europaea HOM05D000068 ORTHO05D009371 5.1e-96 355.5 329 55.9
Cfa016622 Carpinus fangiana HOM05D000068 ORTHO05D009371 3.3e-95 352.8 422 47.4
AUR62006194 Chenopodium quinoa HOM05D000068 ORTHO05D009371 7.4e-95 351.7 352 54.0
ECA248G3626 Erigeron canadensis HOM05D000068 ORTHO05D009371 1.3e-94 350.9 387 52.5
arahy.Tifrunner.gnm1.ann1.F7MRFZ Arachis hypogaea HOM05D000068 ORTHO05D009371 4.8e-94 349.0 382 50.0
TPR.G9905 Trifolium pratense HOM05D000068 ORTHO05D009371 4.8e-94 349.0 328 56.4
MBI01_g00909_MAGBIO Magnolia biondii HOM05D000068 ORTHO05D009371 6.2e-94 348.6 335 55.8
Medtr1g059830 Medicago truncatula HOM05D000068 ORTHO05D009371 2.4e-93 346.7 352 53.1
HanXRQChr02g0032661 Helianthus annuus HOM05D000068 ORTHO05D009371 3.4e-92 342.8 354 54.5
MD12G1026900 Malus domestica HOM05D000068 ORTHO05D009371 5.5e-90 335.5 337 52.5
arahy.Tifrunner.gnm1.ann1.32L6HG Arachis hypogaea HOM05D000068 ORTHO05D009371 2.7e-89 333.2 412 46.4
CDE06G2143 Ceratophyllum demersum HOM05D000068 ORTHO05D009371 3.5e-89 332.8 333 52.9
Ca_00898_v3 Cicer arietinum L. HOM05D000068 ORTHO05D009371 4.6e-89 332.4 328 53.0
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 2.3e-88 330.1 372 49.2
Lj5g0025633 Lotus japonicus HOM05D000068 ORTHO05D009371 5.1e-88 328.9 329 51.7
DCAR_020741 Daucus carota HOM05D000068 ORTHO05D009371 1.5e-87 327.4 380 51.6
Lalb_Chr02g0154911 Lupinus albus HOM05D000068 ORTHO05D009371 8.2e-86 321.6 400 46.2
AUR62037027 Chenopodium quinoa HOM05D000068 ORTHO05D009371 2.4e-85 320.1 322 54.0
Glyma.10G073800 Glycine max HOM05D000068 ORTHO05D009371 6.9e-85 318.5 338 51.5
ATR0776G090 Amborella trichopoda HOM05D000068 ORTHO05D009371 3.0e-80 303.1 277 57.8
SGA_v2.0_scaffold31G12905 Striga asiatica HOM05D000068 ORTHO05D009371 5.7e-79 298.9 332 51.5
HPP92_023009 Vanilla planifolia HOM05D000068 ORTHO05D009371 1.5e-76 290.8 324 48.5
Os04g0413000 Oryza sativa ssp. japonica HOM05D000068 ORTHO05D009371 1.0e-72 278.1 333 46.2
Pp3c6_20190 Physcomitrium patens HOM05D000068 ORTHO05D009371 5.7e-71 272.3 335 44.2
Nitab4.5_0000692g0100 Nicotiana tabacum HOM05D006502 ORTHO05D007704 2.8e-70 270.0 385 43.1
Mapoly0025s0012 Marchantia polymorpha HOM05D000068 ORTHO05D009371 6.3e-70 268.9 350 44.6
Zm00001eb083810 Zea mays HOM05D000068 ORTHO05D009371 2.6e-68 263.5 338 43.2
SMO119G0430 Selaginella moellendorffii HOM05D000068 ORTHO05D009371 8.2e-62 241.9 367 39.8
Thecc.05G090700 Theobroma cacao HOM05D000068 ORTHO05D009371 2.6e-60 236.9 396 41.2
Eucgr.A02657 Eucalyptus grandis HOM05D000068 ORTHO05D009371 1.6e-57 227.6 186 63.4
Dinv31696 Davidia involucrata HOM05D000068 ORTHO05D009371 1.3e-54 218.0 186 62.4
Psat6g079600 Pisum sativum HOM05D000068 ORTHO05D009371 7.0e-53 212.2 186 57.5
Sed0018791 Sechium edule HOM05D000068 ORTHO05D009371 2.0e-52 210.7 190 60.5
BcaB05g25316 Brassica carinata HOM05D001354 ORTHO05D027597 2.0e-44 184.1 227 55.9
SHI23853 Sapria himalayana HOM05D000068 ORTHO05D009371 2.5e-34 150.6 131 57.3
AagrBONN_evm.TU.Sc2ySwM_344.4219 Anthoceros agrestis HOM05D000068 ORTHO05D009371 2.1e-33 147.5 165 47.9
CBR_g49225 Chara braunii HOM05D000068 ORTHO05D009371 1.3e-27 128.3 195 37.4
Psat6g079640 Pisum sativum HOM05D000068 ORTHO05D009371 3.6e-25 120.2 131 49.6
SEGI_11172 Sequoiadendron giganteum HOM05D000068 ORTHO05D009371 3.6e-25 120.2 156 44.9
CBR_g49221 Chara braunii HOM05D000019 ORTHO05D000353 8.6e-19 99.0 126 43.7
PRCOL_00002334 Prasinoderma coloniale HOM05D000068 ORTHO05D009371 5.6e-18 96.3 302 28.8
Actinidia27834 Actinidia chinensis HOM05D000068 ORTHO05D009371 9.5e-10 68.9 69 47.8
Actinidia27835 Actinidia chinensis HOM05D000068 ORTHO05D023336 2.1e-09 67.8 52 65.4


User provided reference genes

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