Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 1.4e-187 659.8 421 100.0
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 1.1e-176 623.6 419 95.5
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 1.1e-176 623.6 419 95.5
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 1.2e-167 593.6 424 92.2
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 4.4e-162 575.1 430 87.0
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 2.1e-156 556.2 431 86.1
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 1.3e-153 547.0 418 85.2
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 2.2e-153 546.2 416 85.8
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 2.2e-153 546.2 439 84.7
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 3.5e-151 538.9 420 86.2
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 2.4e-144 516.2 434 77.0
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 9.0e-139 497.7 416 76.9
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 3.8e-121 439.1 435 69.4
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 4.6e-119 432.2 431 61.9
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 5.7e-117 425.2 423 70.2
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 3.7e-116 422.5 441 61.0
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 2.4e-115 419.9 437 59.3
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 5.0e-113 412.1 430 60.2
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 6.5e-113 411.8 430 63.3
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 1.1e-112 411.0 428 64.0
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 1.4e-112 410.6 425 63.1
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 1.4e-112 410.6 422 68.7
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 5.5e-112 408.7 425 66.6
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 5.5e-112 408.7 426 61.3
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 7.2e-112 408.3 428 62.4
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 1.2e-111 407.5 428 60.7
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 1.2e-111 407.5 435 65.7
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 2.1e-111 406.8 433 62.1
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 2.7e-111 406.4 425 60.9
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 2.7e-111 406.4 426 65.0
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 7.9e-111 404.8 429 59.4
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.0e-110 404.4 423 61.5
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 1.4e-110 404.1 424 63.0
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 2.3e-110 403.3 429 59.2
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.3e-110 403.3 418 62.4
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 8.8e-110 401.4 434 59.4
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 8.8e-110 401.4 426 62.7
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 8.8e-110 401.4 433 61.2
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 1.1e-109 401.0 432 63.0
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.0e-109 400.2 421 61.3
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 2.6e-109 399.8 428 58.6
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 3.3e-109 399.4 429 59.2
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 3.3e-109 399.4 422 61.8
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 4.4e-109 399.1 434 59.2
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 4.4e-109 399.1 434 59.0
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 4.4e-109 399.1 434 58.8
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 4.4e-109 399.1 424 62.3
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 5.7e-109 398.7 434 59.2
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 5.7e-109 398.7 429 57.8
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 2.2e-108 396.7 437 58.4
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 1.1e-107 394.4 423 60.0
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 3.1e-107 392.9 422 65.9
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 9.1e-107 391.3 431 59.2
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 9.1e-107 391.3 429 58.0
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 1.5e-106 390.6 428 59.8
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 2.6e-106 389.8 427 58.1
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 4.5e-106 389.0 422 60.2
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 1.3e-105 387.5 422 65.4
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 2.2e-105 386.7 434 57.4
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 2.9e-105 386.3 420 61.9
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 3.8e-105 386.0 355 66.8
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 5.0e-105 385.6 425 57.2
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 6.5e-105 385.2 434 57.8
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 6.5e-105 385.2 430 61.6
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 8.5e-105 384.8 427 58.1
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.4e-104 384.0 430 61.6
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 1.9e-104 383.6 337 68.5
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 1.9e-104 383.6 434 58.5
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 3.2e-104 382.9 424 63.7
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 5.5e-104 382.1 432 56.7
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.6e-103 380.6 430 61.4
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 1.6e-103 380.6 434 60.6
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 2.1e-103 380.2 337 64.1
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 2.1e-103 380.2 438 60.3
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 2.1e-103 380.2 422 62.3
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 3.6e-103 379.4 455 55.2
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 3.6e-103 379.4 428 56.8
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 4.7e-103 379.0 428 56.5
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 8.0e-103 378.3 355 66.5
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 8.0e-103 378.3 435 59.5
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 8.0e-103 378.3 427 59.5
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 1.0e-102 377.9 429 56.6
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 1.4e-102 377.5 355 66.5
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 1.8e-102 377.1 435 56.8
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.3e-102 376.7 431 61.3
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 6.7e-102 375.2 422 61.4
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 6.7e-102 375.2 427 59.3
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 8.8e-102 374.8 347 65.4
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 5.7e-101 372.1 426 57.7
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 7.4e-101 371.7 431 57.1
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 2.2e-100 370.2 425 55.8
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.1e-99 367.9 428 55.8
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.4e-99 367.5 331 68.6
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 2.4e-99 366.7 350 64.9
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 2.4e-99 366.7 425 54.8
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 3.1e-99 366.3 358 60.6
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 4.1e-99 365.9 426 56.3
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 7.0e-99 365.2 429 62.2
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 2.0e-98 363.6 433 53.6
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 2.6e-98 363.2 427 54.8
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 5.9e-98 362.1 331 67.7
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 1.3e-97 360.9 428 54.0
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 1.7e-97 360.5 433 55.7
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 5.0e-97 359.0 428 57.0
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 5.0e-97 359.0 443 59.4
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 1.1e-96 357.8 424 61.1
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.6e-95 354.0 429 59.7
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.3e-94 350.1 428 60.0
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 5.2e-94 349.0 316 66.5
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 9.7e-93 344.7 437 52.6
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 1.7e-92 344.0 442 57.9
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 2.2e-92 343.6 444 64.0
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 3.7e-92 342.8 432 55.8
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 2.4e-91 340.1 347 61.1
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 2.2e-89 333.6 433 52.9
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 1.1e-88 331.3 426 53.3
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 5.5e-88 328.9 425 52.9
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 3.6e-87 326.2 387 56.6
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 8.0e-87 325.1 326 64.1
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 8.6e-81 305.1 337 61.1
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 2.5e-80 303.5 429 51.3
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 5.5e-80 302.4 345 54.8
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 9.5e-80 301.6 344 57.6
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 1.7e-73 280.8 423 58.4
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 1.9e-72 277.3 356 50.8
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 1.9e-72 277.3 353 50.1
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 1.0e-70 271.6 359 51.8
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 3.4e-69 266.5 357 51.5
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 6.4e-68 262.3 209 73.7
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 3.2e-67 260.0 260 67.3
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 3.2e-67 260.0 260 67.3
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 1.2e-66 258.1 287 53.7
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.1e-62 243.4 428 43.9
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.4e-59 233.8 237 62.0
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 7.0e-59 232.3 358 46.1
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 1.0e-57 228.4 146 91.8
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 3.3e-56 223.4 306 52.6
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 1.2e-55 221.5 220 63.2
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 6.0e-50 202.6 193 64.8
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 1.9e-43 181.0 248 46.8
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.7e-41 174.5 225 48.0
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 3.0e-41 173.7 244 45.9
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 1.1e-40 171.8 379 38.5
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 8.1e-39 165.6 334 40.1
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.3e-36 158.3 267 37.5
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 1.1e-35 155.2 344 37.2
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 4.0e-30 136.7 136 56.6
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 5.8e-29 132.9 339 38.6
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 1.0e-25 122.1 109 63.3
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 1.9e-24 117.9 248 31.5
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.9e-24 117.9 125 60.0
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.5e-13 81.6 232 28.4
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 4.2e-11 73.6 111 53.2
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 2.8e-07 60.8 115 40.0


User provided reference genes

Program Settings