Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 8.8e-246 853.6 432 100.0
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 1.4e-235 819.7 430 97.0
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 4.7e-231 804.7 457 91.2
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 3.7e-212 741.9 438 87.0
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 3.1e-211 738.8 382 97.1
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 2.5e-208 729.2 438 85.4
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 4.2e-208 728.4 431 86.5
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 4.0e-206 721.8 439 85.2
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 1.5e-197 693.3 441 81.6
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 7.8e-186 654.4 422 79.6
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.8e-182 643.3 431 78.4
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 4.3e-168 595.5 421 70.5
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 5.6e-168 595.1 421 71.0
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 7.3e-168 594.7 421 70.8
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 6.2e-167 591.7 422 70.9
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 7.6e-165 584.7 433 67.7
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 9.9e-165 584.3 433 67.4
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 8.4e-164 581.3 433 67.4
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 7.1e-163 578.2 422 69.0
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.3e-161 573.9 421 68.4
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 2.1e-159 566.6 433 67.7
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 3.1e-158 562.8 421 69.1
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 9.9e-157 557.8 421 67.2
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 9.9e-157 557.8 352 82.7
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 1.7e-156 557.0 430 67.4
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 6.4e-156 555.1 433 66.1
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 1.9e-155 553.5 421 66.7
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 1.9e-155 553.5 433 65.6
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 2.4e-155 553.1 422 66.8
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.4e-155 553.1 434 65.9
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 4.2e-155 552.4 378 71.7
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 4.2e-155 552.4 421 66.5
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 5.4e-155 552.0 434 65.4
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 7.1e-155 551.6 434 65.7
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 9.3e-155 551.2 396 68.2
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 1.2e-154 550.8 427 66.7
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 2.7e-154 549.7 424 67.2
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 3.5e-154 549.3 417 65.7
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.5e-154 549.3 434 65.7
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 6.0e-154 548.5 434 65.2
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 1.8e-153 547.0 421 67.0
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 2.3e-153 546.6 430 66.3
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 2.3e-153 546.6 436 65.4
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 3.0e-153 546.2 422 66.4
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 3.9e-153 545.8 424 66.5
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 6.7e-153 545.0 423 66.2
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 8.7e-153 544.7 422 66.8
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 1.9e-152 543.5 421 65.6
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 2.8e-151 539.7 434 62.9
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 3.7e-151 539.3 433 63.5
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 4.8e-151 538.9 421 64.8
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 6.2e-151 538.5 431 64.7
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 1.4e-150 537.3 422 66.4
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 1.8e-150 537.0 421 65.3
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 3.1e-150 536.2 373 70.2
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 1.2e-149 534.3 423 66.2
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 2.6e-149 533.1 423 65.5
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 2.6e-149 533.1 421 63.9
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.6e-149 533.1 438 62.8
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 5.8e-149 531.9 429 63.6
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 7.6e-149 531.6 420 64.5
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 7.6e-149 531.6 414 64.0
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 2.2e-148 530.0 421 64.8
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 2.5e-147 526.6 432 61.1
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 5.5e-147 525.4 423 63.6
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 5.5e-147 525.4 432 60.9
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 5.5e-147 525.4 433 62.1
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.2e-146 524.2 464 58.4
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 1.0e-145 521.2 425 61.2
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.8e-145 520.4 421 63.9
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 5.1e-145 518.8 434 61.1
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 6.7e-145 518.5 421 64.4
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 9.6e-144 514.6 423 62.4
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.8e-142 510.4 422 62.1
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 3.1e-142 509.6 403 63.8
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 4.5e-141 505.8 422 61.6
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 5.8e-141 505.4 422 61.8
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 1.0e-140 504.6 421 62.7
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 1.0e-140 504.6 419 61.3
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 1.3e-140 504.2 421 61.0
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 1.7e-140 503.8 421 63.2
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 6.5e-140 501.9 394 64.7
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 8.4e-140 501.5 431 60.3
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 1.2e-138 497.7 349 68.8
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 4.6e-138 495.7 419 60.4
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 6.1e-138 495.4 383 62.7
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 7.9e-138 495.0 434 58.5
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.0e-137 494.6 425 59.3
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 1.3e-137 494.2 431 60.8
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 6.7e-137 491.9 420 61.4
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 3.3e-136 489.6 423 60.8
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 9.7e-136 488.0 440 58.4
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 2.8e-135 486.5 468 56.4
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 5.3e-134 482.3 388 61.6
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 9.0e-134 481.5 402 60.7
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 2.0e-133 480.3 411 59.6
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 2.0e-133 480.3 397 62.0
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 5.0e-132 475.7 431 56.8
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 8.5e-132 474.9 417 59.0
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 1.9e-131 473.8 407 59.7
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 2.5e-131 473.4 423 58.6
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 7.2e-131 471.9 423 58.2
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 3.3e-128 463.0 423 57.7
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 4.3e-128 462.6 373 60.9
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 8.2e-127 458.4 420 56.7
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 3.8e-124 449.5 435 55.9
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 1.0e-121 441.4 421 55.6
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 2.0e-117 427.2 376 56.9
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 3.8e-116 422.9 346 61.6
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 5.2e-113 412.5 426 55.2
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 2.6e-112 410.2 223 91.0
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 2.2e-111 407.1 291 68.7
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 5.9e-109 399.1 325 60.9
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 8.0e-106 388.7 432 51.9
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 1.2e-101 374.8 260 70.4
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 1.6e-101 374.4 433 46.9
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 3.6e-98 363.2 346 53.5
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 8.8e-97 358.6 182 98.9
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 1.7e-95 354.4 421 48.0
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 5.4e-94 349.4 412 46.6
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.7e-92 344.4 349 53.6
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 7.8e-77 292.4 358 45.8
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 3.0e-76 290.4 346 45.4
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 1.9e-75 287.7 353 44.5
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 1.6e-74 284.6 214 65.0
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 1.2e-66 258.5 211 62.1
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 9.2e-62 242.3 434 38.9
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 1.1e-59 235.3 160 70.6
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 2.4e-57 227.6 388 37.4
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 8.7e-44 182.6 103 88.3
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 1.8e-41 174.9 194 46.4
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 1.5e-40 171.8 136 57.4
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 4.5e-40 170.2 513 27.7
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 2.9e-31 141.0 109 64.2
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 1.1e-30 139.0 109 62.4
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 2.7e-29 134.4 121 51.2
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 8.2e-26 122.9 95 62.1
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 3.4e-24 117.5 266 31.6
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 4.2e-22 110.5 87 60.9
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 1.3e-20 105.5 349 26.6
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 2.2e-18 98.2 106 53.8
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 1.2e-16 92.4 161 36.6
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 5.1e-12 77.0 106 43.4
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 2.0e-11 75.1 110 46.4
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 1.5e-08 65.5 123 35.0
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 1.9e-06 58.5 85 44.7
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 3.2e-06 57.8 44 56.8


User provided reference genes

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