Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31685 Brassica carinata HOM05D007216 ORTHO05D009261 4.8e-132 474.6 248 100.0
BcaC06g34638 Brassica carinata HOM05D007216 ORTHO05D009261 4.0e-110 401.7 248 85.9
C07p26230 Brassica napus HOM05D007216 ORTHO05D009261 4.0e-110 401.7 248 85.9
BolC7t43151H Brassica oleracea HOM05D007216 ORTHO05D009261 4.0e-110 401.7 248 85.9
A06p47770 Brassica napus HOM05D007216 ORTHO05D009261 6.5e-105 384.4 237 86.1
Thhalv10003353m.g Eutrema salsugineum HOM05D007216 ORTHO05D009261 5.5e-96 354.8 252 78.2
BraA06t27645Z Brassica rapa HOM05D007216 ORTHO05D009261 6.8e-94 347.8 216 85.2
BraA09t37658Z Brassica rapa HOM05D007216 ORTHO05D009261 2.8e-92 342.4 247 74.9
BcaC04g21907 Brassica carinata HOM05D007216 ORTHO05D009261 6.3e-92 341.3 247 75.3
SpUn0744_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 5.9e-90 334.7 216 80.1
CARHR006300 Cardamine hirsuta HOM05D007216 ORTHO05D009261 5.6e-88 328.2 250 69.2
A09p20520 Brassica napus HOM05D007216 ORTHO05D009261 1.2e-87 327.0 255 71.4
BolC9t55498H Brassica oleracea HOM05D007216 ORTHO05D009261 1.0e-86 323.9 248 72.6
AL390U10010 Arabidopsis lyrata HOM05D007216 ORTHO05D009261 4.4e-85 318.5 252 71.0
BcaB07g31004 Brassica carinata HOM05D007216 ORTHO05D009261 1.3e-84 317.0 246 72.0
C09p25930 Brassica napus HOM05D007216 ORTHO05D009261 1.4e-78 297.0 216 75.0
Carub.0008s0499 Capsella rubella HOM05D007216 ORTHO05D009261 1.2e-74 283.9 240 66.7
SpUn0429_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 3.1e-70 269.2 215 67.9
Aa31LG5G3580 Aethionema arabicum HOM05D007216 ORTHO05D009261 2.4e-67 259.6 248 58.9
AT5G43650 Arabidopsis thaliana HOM05D007216 ORTHO05D009261 5.4e-67 258.5 220 67.3
THA.LOC104827376 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 7.3e-56 221.5 246 51.6
THA.LOC104801097 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 3.2e-51 206.1 281 44.5
Haze_11297 Corylus avellana HOM05D007216 ORTHO05D009261 9.0e-38 161.4 240 42.9
Haze_11299 Corylus avellana HOM05D007216 ORTHO05D009261 9.0e-38 161.4 228 43.9
Cfa008380 Carpinus fangiana HOM05D007216 ORTHO05D009261 3.8e-36 156.0 206 43.7
QL06p015626 Quercus lobata HOM05D007216 ORTHO05D009261 1.9e-35 153.7 206 42.2
Cpa.g.sc58.45 Carica papaya HOM05D007216 ORTHO05D009261 2.5e-35 153.3 204 43.1
Thecc.04G245800 Theobroma cacao HOM05D007216 ORTHO05D009261 4.2e-35 152.5 177 47.5
Atru.chr4.2233 Acer truncatum HOM05D007216 ORTHO05D009261 4.6e-34 149.1 201 44.3
CSS0019068 Camellia sinensis var. sinensis HOM05D007216 ORTHO05D009261 7.9e-34 148.3 176 48.3
Ciclev10005777m.g Citrus clementina HOM05D007216 ORTHO05D009261 1.8e-33 147.1 229 40.6
Duzib151G0820 Durio zibethinus HOM05D007216 ORTHO05D009261 2.3e-33 146.7 183 44.8
Duzib151G0028 Durio zibethinus HOM05D007216 ORTHO05D009261 1.1e-32 144.4 183 44.3
Duzib052G0756 Durio zibethinus HOM05D007216 ORTHO05D009261 9.6e-32 141.4 236 39.0
Gohir.A09G222900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 9.6e-32 141.4 202 42.1
CiPaw.02G116600 Carya illinoinensis HOM05D007216 ORTHO05D009261 2.1e-31 140.2 211 41.2
Potri.010G077000 Populus trichocarpa HOM05D007216 ORTHO05D009261 2.8e-31 139.8 230 39.1
Prupe.1G030500 Prunus persica HOM05D007216 ORTHO05D009261 3.7e-31 139.4 213 40.4
Solyc09g083360.3 Solanum lycopersicum HOM05D007216 ORTHO05D009261 4.8e-31 139.0 209 40.7
Sopen09g032280 Solanum pennellii HOM05D007216 ORTHO05D009261 4.8e-31 139.0 206 40.8
Gorai.006G246400 Gossypium raimondii HOM05D007216 ORTHO05D009261 1.4e-30 137.5 175 44.6
COL.COLO4_15786 Corchorus olitorius HOM05D007216 ORTHO05D009261 1.8e-30 137.1 183 44.8
MD16G1208400 Malus domestica HOM05D007216 ORTHO05D009261 2.4e-30 136.7 208 43.8
GSVIVG01018111001 Vitis vinifera HOM05D007216 ORTHO05D009261 3.1e-30 136.3 169 49.1
TAR365G0907 Trochodendron aralioides HOM05D007216 ORTHO05D009261 4.0e-30 136.0 246 40.7
Gohir.D09G224900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 6.9e-30 135.2 174 44.3
Actinidia05467 Actinidia chinensis HOM05D007216 ORTHO05D009261 9.0e-30 134.8 203 42.4
PGR031G3332 Punica granatum HOM05D007216 ORTHO05D009261 1.2e-29 134.4 239 35.6
Sabra10G0031800 Salix brachista HOM05D007216 ORTHO05D009261 2.0e-29 133.7 234 38.0
ATR0665G548 Amborella trichopoda HOM05D007216 ORTHO05D009261 2.6e-29 133.3 198 41.4
MD13G1206900 Malus domestica HOM05D007216 ORTHO05D009261 2.6e-29 133.3 206 40.8
Actinidia08446 Actinidia chinensis HOM05D007216 ORTHO05D009261 3.4e-29 132.9 205 41.0
Duzib212G0514 Durio zibethinus HOM05D007216 ORTHO05D009261 3.4e-29 132.9 215 39.5
RcHm_v2.0_Chr4g0390311 Rosa chinensis HOM05D007216 ORTHO05D009261 4.5e-29 132.5 246 39.0
Rhsim02G0032900 Rhododendron simsii HOM05D007216 ORTHO05D009261 5.8e-29 132.1 179 44.1
CiPaw.01G190600 Carya illinoinensis HOM05D007216 ORTHO05D009261 7.6e-29 131.7 207 39.6
Potri.008G161800 Populus trichocarpa HOM05D007216 ORTHO05D009261 1.0e-28 131.3 232 37.1
Cc03_g04820 Coffea canephora HOM05D007216 ORTHO05D009261 1.7e-28 130.6 179 45.3
FvH4_4g02610 Fragaria vesca HOM05D007216 ORTHO05D009261 3.8e-28 129.4 210 42.9
Manes.03G169100 Manihot esculenta HOM05D007216 ORTHO05D009261 6.5e-28 128.6 202 38.6
CsaV3_2G013060 Cucumis sativus L. HOM05D007216 ORTHO05D009261 1.1e-27 127.9 186 41.9
Medtr1g040435 Medicago truncatula HOM05D007216 ORTHO05D009261 1.1e-27 127.9 213 39.9
QL06p015621 Quercus lobata HOM05D007216 ORTHO05D009261 1.1e-27 127.9 185 39.5
MELO3C026778.2 Cucumis melo HOM05D007216 ORTHO05D009261 2.5e-27 126.7 186 42.5
DCAR_027275 Daucus carota HOM05D007216 ORTHO05D009261 2.5e-27 126.7 202 37.6
Dinv29914 Davidia involucrata HOM05D007216 ORTHO05D009261 2.5e-27 126.7 148 49.3
Sed0021571 Sechium edule HOM05D007216 ORTHO05D009261 4.2e-27 125.9 186 38.7
Nn3g19525 Nelumbo nucifera HOM05D007216 ORTHO05D009261 7.1e-27 125.2 204 40.2
Sc13g0004990 Simmondsia chinensis HOM05D007216 ORTHO05D009261 1.6e-26 124.0 221 41.2
Migut.G00433 Erythranthe guttata HOM05D007216 ORTHO05D009261 2.1e-26 123.6 226 38.1
Oeu008788.2 Olea europaea HOM05D007216 ORTHO05D009261 2.1e-26 123.6 182 42.3
Eucgr.H00196 Eucalyptus grandis HOM05D007216 ORTHO05D009261 2.7e-26 123.2 205 39.5
Peaxi162Scf00813g00118 Petunia axillaris HOM05D007216 ORTHO05D009261 4.6e-26 122.5 193 38.3
Sed0000846 Sechium edule HOM05D007216 ORTHO05D009261 6.1e-26 122.1 179 40.2
Sed0019243 Sechium edule HOM05D007216 ORTHO05D009261 6.1e-26 122.1 179 40.2
Nn1g02593 Nelumbo nucifera HOM05D007216 ORTHO05D009261 1.3e-25 120.9 209 38.3
CANSAT78G2280 Cannabis sativa HOM05D007216 ORTHO05D009261 2.3e-25 120.2 236 34.3
ClCG06G006720 Citrullus lanatus HOM05D007216 ORTHO05D009261 5.1e-25 119.0 189 40.2
MSTRG.4097 Avicennia marina HOM05D007216 ORTHO05D009261 2.5e-24 116.7 175 38.3
Sabra08G0123600 Salix brachista HOM05D007216 ORTHO05D009261 2.5e-24 116.7 186 38.2
FAN12G1817 Fragaria x ananassa HOM05D007216 ORTHO05D009261 3.3e-24 116.3 189 41.8
TWI09G1088 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 3.3e-24 116.3 182 36.3
TWI73G0753 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 4.3e-24 115.9 170 38.2
Glyma.02G000800 Glycine max HOM05D007216 ORTHO05D009261 5.7e-24 115.5 251 34.7
DCAR_027276 Daucus carota HOM05D007216 ORTHO05D009261 4.8e-23 112.5 217 34.1
Eucgr.J01563 Eucalyptus grandis HOM05D007216 ORTHO05D009261 4.8e-23 112.5 179 39.7
Psat6g102240 Pisum sativum HOM05D007216 ORTHO05D009261 6.3e-23 112.1 240 36.2
Gorai.005G046700 Gossypium raimondii HOM05D007216 ORTHO05D009261 1.8e-22 110.5 181 38.7
Gohir.D02G042400 Gossypium hirsutum HOM05D007216 ORTHO05D009261 2.4e-22 110.2 181 38.7
Lalb_Chr03g0037861 Lupinus albus HOM05D007216 ORTHO05D009261 6.9e-22 108.6 192 38.5
Gohir.A02G035500 Gossypium hirsutum HOM05D007216 ORTHO05D009261 3.4e-21 106.3 182 37.9
TAR636G2640 Trochodendron aralioides HOM05D007216 ORTHO05D009261 5.9e-21 105.5 193 37.3
TPR.G22479 Trifolium pratense HOM05D007216 ORTHO05D009261 1.4e-19 100.9 208 37.5
Os03g0741100 Oryza sativa ssp. japonica HOM05D007216 ORTHO05D009261 3.2e-19 99.8 143 40.6
Zm00001eb056760 Zea mays HOM05D007216 ORTHO05D009261 9.4e-19 98.2 146 40.4
Phvul.007G280700 Phaseolus vulgaris HOM05D007216 ORTHO05D009261 7.9e-18 95.1 161 39.8
Lj6C656T7 Lonicera japonica HOM05D007216 ORTHO05D009261 2.2e-15 87.0 211 33.6
Hma1.2p1_0893F.1_g233480 Hydrangea macrophylla HOM05D007216 ORTHO05D009261 3.7e-15 86.3 90 53.3
Dinv44631 Davidia involucrata HOM05D007216 ORTHO05D009261 2.4e-14 83.6 111 43.2
Nitab4.5_0004798g0070 Nicotiana tabacum HOM05D007216 ORTHO05D009261 4.1e-14 82.8 202 32.2
CAN.G1007.15 Capsicum annuum HOM05D007216 ORTHO05D009261 4.5e-13 79.3 95 46.3
Aqoxy5G00327 Aquilegia oxysepala HOM05D007216 ORTHO05D009261 3.8e-12 76.3 120 35.0
HPP92_023468 Vanilla planifolia HOM05D007216 ORTHO05D009261 5.5e-11 72.4 218 33.0
HPP92_023463 Vanilla planifolia HOM05D007216 ORTHO05D009261 7.2e-11 72.0 218 33.5
HPP92_027840 Vanilla planifolia HOM05D007216 ORTHO05D009261 1.0e-09 68.2 195 31.8
Nitab4.5_0000525g0160 Nicotiana tabacum HOM05D007216 ORTHO05D009261 2.3e-09 67.0 177 29.9
Zm00001eb370010 Zea mays HOM05D007216 ORTHO05D049898 6.3e-07 58.9 157 29.9
COL.COLO4_18190 Corchorus olitorius HOM05D004059 ORTHO05D004591 2.4e-06 57.0 147 34.7
AL8G32820 Arabidopsis lyrata HOM05D004059 ORTHO05D004591 9.1e-06 55.1 165 30.9
Gohir.A07G011900 Gossypium hirsutum HOM05D004059 ORTHO05D004591 9.1e-06 55.1 154 32.5
Gorai.001G012400 Gossypium raimondii HOM05D004059 ORTHO05D004591 9.1e-06 55.1 154 31.8


User provided reference genes

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