Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 6.5e-138 494.6 358 100.0
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 2.3e-135 486.1 356 88.5
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 4.3e-134 481.9 356 87.9
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 8.5e-130 467.6 359 92.8
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 7.2e-129 464.5 357 93.0
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 4.2e-121 438.7 294 85.4
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 4.8e-117 425.2 365 73.4
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 2.0e-115 419.9 356 79.5
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 2.0e-115 419.9 356 79.5
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 1.2e-112 410.6 284 94.0
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 6.7e-111 404.8 292 83.6
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 1.7e-109 400.2 289 83.4
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 5.3e-108 395.2 359 77.4
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 2.1e-96 356.7 278 86.3
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 2.4e-92 343.2 293 80.9
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 1.2e-91 340.9 293 80.5
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 2.1e-88 330.1 294 68.0
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 5.2e-87 325.5 358 58.4
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 5.2e-87 325.5 289 68.9
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 6.8e-87 325.1 372 58.3
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 1.3e-85 320.9 294 66.3
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 1.7e-85 320.5 370 56.2
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 2.2e-85 320.1 374 56.7
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 2.9e-85 319.7 374 56.7
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 6.4e-85 318.5 371 59.3
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 1.8e-84 317.0 198 87.9
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 3.2e-84 316.2 374 62.3
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 2.7e-83 313.2 295 65.1
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 4.6e-83 312.4 275 67.3
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 6.0e-83 312.0 371 62.3
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 1.9e-81 307.0 359 59.9
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 2.5e-81 306.6 378 54.2
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 6.2e-80 302.0 362 62.4
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 3.1e-79 299.7 293 62.5
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 5.2e-79 298.9 374 55.9
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 8.9e-79 298.1 294 61.9
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 2.0e-78 297.0 376 53.2
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 1.7e-77 293.9 372 53.5
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 1.1e-76 291.2 379 52.8
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 1.9e-76 290.4 376 59.3
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.9e-76 290.4 371 60.9
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 1.9e-76 290.4 369 54.2
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 2.4e-76 290.0 290 63.4
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 3.2e-76 289.7 296 60.8
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 7.0e-76 288.5 374 57.8
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 7.0e-76 288.5 365 59.5
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 2.1e-75 287.0 314 58.0
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 2.1e-75 287.0 290 61.0
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.1e-75 287.0 371 60.4
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 6.0e-75 285.4 291 60.5
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 1.7e-74 283.9 398 49.5
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 2.3e-74 283.5 309 58.9
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 2.3e-74 283.5 372 54.8
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 3.0e-74 283.1 375 51.5
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 1.1e-73 281.2 358 59.8
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 1.5e-73 280.8 296 59.5
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 5.6e-73 278.9 361 57.9
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 2.8e-72 276.6 359 58.8
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 2.8e-72 276.6 376 51.3
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 4.7e-72 275.8 408 48.5
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 6.2e-72 275.4 309 56.3
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 1.8e-71 273.9 372 53.2
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 5.2e-71 272.3 372 51.3
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 1.5e-70 270.8 354 52.0
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 4.4e-70 269.2 162 92.0
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 4.4e-70 269.2 302 57.6
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 1.3e-69 267.7 378 50.3
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 2.9e-69 266.5 363 51.5
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 3.7e-69 266.2 145 99.3
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 8.3e-69 265.0 297 57.6
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 1.4e-68 264.2 358 51.1
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 1.9e-68 263.8 372 57.3
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 2.4e-68 263.5 372 57.3
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 3.2e-68 263.1 360 56.9
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.0e-66 258.1 372 51.6
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 1.7e-66 257.3 289 57.1
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 3.0e-66 256.5 282 57.4
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 3.0e-66 256.5 372 55.9
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 1.5e-65 254.2 371 55.5
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 1.9e-65 253.8 292 56.8
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 1.9e-65 253.8 391 57.0
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 2.1e-64 250.4 394 60.7
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 8.1e-64 248.4 304 63.2
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 1.4e-63 247.7 362 49.7
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 2.0e-62 243.8 367 46.3
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.0e-62 243.8 239 64.0
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 5.8e-62 242.3 213 68.5
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 7.6e-62 241.9 364 46.2
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 1.9e-60 237.3 371 51.2
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 3.2e-60 236.5 306 53.3
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 4.2e-60 236.1 305 51.5
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 1.2e-59 234.6 381 52.5
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 1.2e-59 234.6 361 52.4
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 2.7e-59 233.4 191 69.6
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 2.7e-59 233.4 358 55.9
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 3.5e-59 233.0 306 60.5
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 3.5e-59 233.0 287 51.6
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 4.6e-59 232.6 362 50.6
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 6.0e-59 232.3 372 47.0
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.0e-58 231.5 368 46.2
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.0e-58 231.5 278 61.9
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.3e-58 231.1 278 61.5
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 1.7e-58 230.7 257 56.8
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 6.6e-58 228.8 319 57.4
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 6.6e-58 228.8 215 61.9
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 1.1e-57 228.0 309 54.0
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 2.5e-57 226.9 221 59.7
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 5.6e-57 225.7 294 52.7
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 2.8e-56 223.4 373 49.1
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.4e-55 221.1 278 60.4
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 3.1e-55 219.9 203 59.6
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.2e-54 218.0 368 47.6
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 7.6e-54 215.3 311 48.6
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 5.4e-52 209.1 380 52.9
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 6.6e-50 202.2 148 73.0
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 2.5e-49 200.3 213 56.3
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 1.4e-47 194.5 229 55.0
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 9.0e-47 191.8 194 79.9
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 1.2e-46 191.4 346 43.1
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 2.6e-46 190.3 231 50.6
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.3e-45 188.0 216 51.9
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 2.2e-45 187.2 374 44.4
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 4.9e-45 186.0 192 57.8
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 9.3e-44 181.8 308 43.2
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 1.2e-43 181.4 358 45.3
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.1e-41 174.9 371 37.7
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 2.5e-41 173.7 251 46.2
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 4.3e-41 172.9 220 50.5
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 3.7e-40 169.9 220 50.0
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 9.0e-39 165.2 312 46.5
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 3.2e-36 156.8 129 70.5
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 8.7e-34 148.7 140 64.3
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 1.5e-25 121.3 224 42.9
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 3.1e-23 113.6 136 47.1
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 2.6e-22 110.5 220 41.4
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 1.4e-20 104.8 159 41.5
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 4.6e-19 99.8 95 61.1
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 5.0e-13 79.7 87 56.3
MCO11G351 Micromonas commoda HOM05D004913 ORTHO05D006150 7.4e-09 65.9 147 34.7
GSVIVG01034858001 Vitis vinifera HOM05D004913 ORTHO05D006150 5.3e-07 59.7 60 58.3
Atru.chr4.2281 Acer truncatum HOM05D000979 ORTHO05D003182 7.0e-07 59.3 126 42.1


User provided reference genes

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