Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 2.5e-137 492.3 273 100.0
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 2.0e-118 429.5 273 89.4
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 2.0e-118 429.5 273 89.4
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 2.0e-118 429.5 273 89.4
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 9.7e-118 427.2 273 89.0
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 1.7e-114 416.4 283 85.2
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 3.8e-114 415.2 293 82.9
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 1.4e-108 396.7 290 82.4
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 2.9e-106 389.0 280 84.3
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 4.4e-102 375.2 281 75.8
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 2.2e-101 372.9 280 74.3
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 3.6e-96 355.5 281 74.4
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 1.7e-93 346.7 287 71.8
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 2.1e-88 329.7 269 72.1
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 6.0e-67 258.5 181 74.0
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 1.3e-66 257.3 185 73.0
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 2.3e-66 256.5 185 72.4
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 4.3e-65 252.3 179 72.6
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 5.6e-65 251.9 185 72.4
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 5.6e-65 251.9 186 68.8
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 7.3e-65 251.5 180 72.8
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 1.2e-64 250.8 179 73.7
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 1.6e-64 250.4 179 73.2
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 1.6e-64 250.4 285 54.0
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 3.6e-64 249.2 275 53.1
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 3.6e-64 249.2 185 70.3
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 4.7e-64 248.8 180 69.4
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 4.7e-64 248.8 185 69.7
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 6.2e-64 248.4 180 69.4
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 1.1e-63 247.7 279 55.6
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 1.8e-63 246.9 178 73.0
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 1.8e-63 246.9 232 59.9
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 3.1e-63 246.1 180 71.7
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 3.1e-63 246.1 179 71.5
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 4.0e-63 245.7 179 71.5
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 4.0e-63 245.7 180 71.7
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 5.2e-63 245.4 188 70.2
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 5.2e-63 245.4 179 70.4
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 8.9e-63 244.6 180 70.0
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 1.5e-62 243.8 182 70.9
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 2.0e-62 243.4 180 71.1
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 2.0e-62 243.4 177 71.2
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 2.6e-62 243.0 184 67.4
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 5.8e-62 241.9 184 67.9
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 7.5e-62 241.5 185 68.1
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 9.8e-62 241.1 185 70.3
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 9.8e-62 241.1 184 69.6
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 1.3e-61 240.7 186 67.2
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 1.3e-61 240.7 184 67.9
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 1.7e-61 240.4 180 73.9
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 1.7e-61 240.4 185 67.6
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 2.2e-61 240.0 179 68.2
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 3.7e-61 239.2 185 65.4
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 6.4e-61 238.4 282 52.1
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 1.4e-60 237.3 188 68.1
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 3.2e-60 236.1 189 66.7
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 3.2e-60 236.1 188 68.1
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 4.1e-60 235.7 182 68.7
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 1.2e-59 234.2 181 68.5
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 1.6e-59 233.8 181 68.5
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 2.1e-59 233.4 181 68.5
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 1.7e-58 230.3 204 61.8
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 1.9e-57 226.9 234 55.1
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 2.5e-57 226.5 254 55.1
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 7.3e-57 224.9 187 62.6
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 9.5e-57 224.6 182 61.5
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 1.2e-56 224.2 182 61.5
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 6.2e-56 221.9 182 65.4
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 2.3e-55 219.9 158 69.6
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 6.8e-55 218.4 171 66.1
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.5e-54 217.2 170 67.1
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 3.4e-54 216.1 170 66.5
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 4.4e-54 215.7 170 66.5
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 5.8e-54 215.3 157 72.0
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 7.5e-54 214.9 171 66.1
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 9.9e-54 214.5 180 66.7
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 1.3e-53 214.2 170 64.1
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 8.3e-53 211.5 169 60.9
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 5.4e-52 208.8 167 65.9
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 5.1e-50 202.2 143 69.9
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 1.2e-48 197.6 144 70.8
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 1.6e-48 197.2 169 60.4
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 1.4e-47 194.1 239 52.3
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 2.4e-47 193.4 148 65.5
Lj1A1152G38 Lonicera japonica HOM05D002102 ORTHO05D008242 8.9e-47 191.4 149 68.5
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 2.2e-45 186.8 200 54.5
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 8.4e-45 184.9 128 70.3
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 2.7e-43 179.9 180 54.4
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 2.3e-42 176.8 186 55.4
HPP92_001585 Vanilla planifolia HOM05D002102 ORTHO05D008242 6.6e-42 175.3 156 59.0
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 7.3e-41 171.8 182 52.7
C02p45240 Brassica napus HOM05D002102 ORTHO05D008242 4.8e-40 169.1 147 68.0
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.5e-38 164.1 168 54.8
BolC2t10554H Brassica oleracea HOM05D002102 ORTHO05D008242 2.6e-38 163.3 147 68.0
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 9.3e-36 154.8 182 49.5
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 2.7e-35 153.3 185 51.9
A02p28510 Brassica napus HOM05D002102 ORTHO05D008242 7.8e-35 151.8 281 44.8
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 1.3e-34 151.0 143 55.2
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 1.7e-34 150.6 139 58.3
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 3.3e-33 146.4 114 66.7
AagrBONN_evm.TU.Sc2ySwM_368.1584 Anthoceros agrestis HOM05D002102 ORTHO05D008242 1.3e-32 144.4 159 50.3
BraA02t07887Z Brassica rapa HOM05D002102 ORTHO05D008242 4.9e-29 132.5 116 66.4
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 1.1e-28 131.3 162 47.5
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 4.6e-27 125.9 105 61.0
Oeu011782.1 Olea europaea HOM05D002102 ORTHO05D008242 8.7e-26 121.7 131 51.9
HPP92_001768 Vanilla planifolia HOM05D001389 ORTHO05D002892 3.3e-25 119.8 100 55.0
RcHm_v2.0_Chr5g0021891 Rosa chinensis HOM05D002102 ORTHO05D008242 4.3e-25 119.4 85 68.2
Actinidia31357 Actinidia chinensis HOM05D002102 ORTHO05D008242 4.0e-23 112.8 87 72.4
BcaC03g16684 Brassica carinata HOM05D002102 ORTHO05D008242 1.2e-22 111.3 73 84.9
Cre06.g280650 Chlamydomonas reinhardtii HOM05D002102 ORTHO05D008242 2.6e-22 110.2 192 38.0
RcHm_v2.0_Chr5g0021971 Rosa chinensis HOM05D002102 ORTHO05D008242 4.5e-22 109.4 74 73.0
Eucgr.L03440 Eucalyptus grandis HOM05D002102 ORTHO05D008242 1.3e-21 107.8 72 75.0
CBR_g21832 Chara braunii HOM05D002102 ORTHO05D008242 1.7e-21 107.5 184 42.9
SEGI_24162 Sequoiadendron giganteum HOM05D002102 ORTHO05D008242 2.2e-21 107.1 97 56.7
Hund01844 Selenicereus undatus HOM05D002102 ORTHO05D008242 1.4e-20 104.4 66 77.3
ATR0109G022 Amborella trichopoda HOM05D002102 ORTHO05D008242 1.1e-15 88.2 87 56.3
MD05G1242600 Malus domestica HOM05D002102 ORTHO05D008242 4.1e-15 86.3 66 68.2
Actinidia31356 Actinidia chinensis HOM05D002102 ORTHO05D008242 1.7e-13 80.9 66 62.1
RcHm_v2.0_Chr5g0021961 Rosa chinensis HOM05D002102 ORTHO05D008242 3.5e-11 73.2 58 60.3
RcHm_v2.0_Chr5g0021881 Rosa chinensis HOM05D002102 ORTHO05D008242 3.7e-08 63.2 50 58.0
RcHm_v2.0_Chr5g0021951 Rosa chinensis HOM05D002102 ORTHO05D008242 1.1e-07 61.6 48 60.4
Nitab4.5_0001815g0140 Nicotiana tabacum HOM05D002102 ORTHO05D004119 1.4e-07 61.2 107 34.6
Nitab4.5_0007687g0040 Nicotiana tabacum HOM05D002102 ORTHO05D008242 1.4e-07 61.2 43 62.8


User provided reference genes

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