Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31180 Brassica carinata HOM05D006628 ORTHO05D000088 1.3e-41 172.6 83 100.0
BolC6t37302H Brassica oleracea HOM05D006628 ORTHO05D000088 5.5e-40 167.2 82 97.6
C06p21150 Brassica napus HOM05D006628 ORTHO05D000088 3.6e-39 164.5 82 96.3
A07p21570 Brassica napus HOM05D006628 ORTHO05D000088 6.1e-39 163.7 82 96.3
BraA07t29840Z Brassica rapa HOM05D006628 ORTHO05D000088 6.1e-39 163.7 82 96.3
BcaC01g06061 Brassica carinata HOM05D006628 ORTHO05D000088 1.4e-38 162.5 82 93.9
C03p19330 Brassica napus HOM05D006628 ORTHO05D000088 1.4e-38 162.5 82 93.9
BcaB02g07792 Brassica carinata HOM05D006628 ORTHO05D000088 2.3e-38 161.8 82 93.9
A09p46330 Brassica napus HOM05D006628 ORTHO05D000088 5.1e-38 160.6 82 91.5
BraA09t40098Z Brassica rapa HOM05D006628 ORTHO05D000088 5.1e-38 160.6 82 91.5
Sp5g09020 Schrenkiella parvula HOM05D006628 ORTHO05D000088 4.3e-37 157.5 82 87.8
C08p28520 Brassica napus HOM05D006628 ORTHO05D000088 1.7e-36 155.6 82 89.0
BcaB01g00291 Brassica carinata HOM05D006628 ORTHO05D000088 1.1e-35 152.9 82 84.1
BcaC04g21471 Brassica carinata HOM05D000305 ORTHO05D000065 1.8e-35 152.1 82 90.2
C09p31400 Brassica napus HOM05D000305 ORTHO05D000065 1.8e-35 152.1 82 90.2
Thhalv10000999m.g Eutrema salsugineum HOM05D006628 ORTHO05D000088 1.5e-34 149.1 82 82.9
A03p63270 Brassica napus HOM05D006628 ORTHO05D000088 6.5e-33 143.7 83 88.0
BcaB03g12447 Brassica carinata HOM05D006628 ORTHO05D000088 1.4e-32 142.5 82 82.9
Thhalv10010633m.g Eutrema salsugineum HOM05D006628 ORTHO05D000088 2.5e-32 141.7 82 79.3
Carub.0005s1986 Capsella rubella HOM05D006628 ORTHO05D000088 4.4e-29 131.0 82 74.4
Thhalv10014972m.g Eutrema salsugineum HOM05D006628 ORTHO05D000088 2.8e-28 128.3 79 72.2
BcaB08g36960 Brassica carinata HOM05D006628 ORTHO05D000088 1.0e-22 109.8 53 90.6
BraA03t15405Z Brassica rapa HOM05D006628 ORTHO05D000088 3.0e-22 108.2 55 89.1
AT3G53310 Arabidopsis thaliana HOM05D006628 ORTHO05D000088 3.3e-21 104.8 79 60.8
CARHR289330 Cardamine hirsuta HOM05D006628 ORTHO05D000088 5.7e-21 104.0 74 64.9
Aa31LG10G8880 Aethionema arabicum HOM05D006628 ORTHO05D000088 1.1e-19 99.8 73 63.0
Aa31LG10G8470 Aethionema arabicum HOM05D006628 ORTHO05D000088 1.4e-19 99.4 74 58.1
Aa31LG10G8440 Aethionema arabicum HOM05D006628 ORTHO05D000088 1.8e-19 99.0 73 61.6
Aa31LG10G8500 Aethionema arabicum HOM05D006628 ORTHO05D000088 1.7e-17 92.4 74 59.5
BcaC07g39696 Brassica carinata HOM05D006628 ORTHO05D000088 5.0e-17 90.9 82 61.0
BolC8t50461H Brassica oleracea HOM05D006628 ORTHO05D000088 5.0e-17 90.9 82 61.0
Carub.0006s1299 Capsella rubella HOM05D006628 ORTHO05D000088 1.2e-15 86.3 74 54.1
A03p62870 Brassica napus HOM05D006628 ORTHO05D000088 2.1e-15 85.5 77 53.2
BraA03t15364Z Brassica rapa HOM05D006628 ORTHO05D000088 2.1e-15 85.5 77 53.2
C07p60560 Brassica napus HOM05D006628 ORTHO05D000088 3.6e-15 84.7 77 51.9
BolC7t46487H Brassica oleracea HOM05D006628 ORTHO05D000088 3.6e-15 84.7 77 51.9
Carub.0003s0560 Capsella rubella HOM05D006628 ORTHO05D000088 6.1e-15 84.0 74 50.0
BcaNung01328 Brassica carinata HOM05D006628 ORTHO05D000088 1.4e-14 82.8 73 56.2
Sp7g27330 Schrenkiella parvula HOM05D006628 ORTHO05D000088 1.4e-14 82.8 73 54.8
BcaC09g51706 Brassica carinata HOM05D006628 ORTHO05D000088 2.3e-14 82.0 76 53.9
C01p10360 Brassica napus HOM05D006628 ORTHO05D000088 3.0e-14 81.6 76 52.6
BolC1t00991H Brassica oleracea HOM05D006628 ORTHO05D000088 3.0e-14 81.6 76 52.6
AT3G06220 Arabidopsis thaliana HOM05D006628 ORTHO05D000088 4.0e-14 81.3 74 52.7
Aa31LG7G14390 Aethionema arabicum HOM05D006628 ORTHO05D000088 6.8e-14 80.5 75 50.7
AL6G25610 Arabidopsis lyrata HOM05D006628 ORTHO05D000088 1.2e-13 79.7 74 50.0
AT3G06160 Arabidopsis thaliana HOM05D006628 ORTHO05D000088 1.2e-13 79.7 74 51.4
CARHR242370 Cardamine hirsuta HOM05D006628 ORTHO05D000088 1.2e-13 79.7 74 51.4
BraA01t00809Z Brassica rapa HOM05D006628 ORTHO05D000088 1.5e-13 79.3 73 54.8
BcaB05g23662 Brassica carinata HOM05D006628 ORTHO05D000088 2.0e-13 79.0 75 52.0
C01p10050 Brassica napus HOM05D006628 ORTHO05D000088 2.6e-13 78.6 73 54.8
BraA01t00831Z Brassica rapa HOM05D006628 ORTHO05D000088 3.4e-13 78.2 73 53.4
A01p08840 Brassica napus HOM05D006628 ORTHO05D000088 4.4e-13 77.8 73 53.4
Sp6g02680 Schrenkiella parvula HOM05D006628 ORTHO05D000088 9.8e-13 76.6 72 50.0
Carub.0001s1638 Capsella rubella HOM05D006628 ORTHO05D000088 1.3e-12 76.3 71 47.9
Carub.0007s0593 Capsella rubella HOM05D006628 ORTHO05D000088 3.7e-12 74.7 72 48.6
BcaC05g25528 Brassica carinata HOM05D006628 ORTHO05D000088 6.3e-12 73.9 82 41.5
C05p14930 Brassica napus HOM05D006628 ORTHO05D000088 6.3e-12 73.9 82 41.5
BcaC03g16172 Brassica carinata HOM05D006628 ORTHO05D000088 8.3e-12 73.6 75 48.0
A02p24960 Brassica napus HOM05D006628 ORTHO05D000088 8.3e-12 73.6 75 48.0
C02p39080 Brassica napus HOM05D006628 ORTHO05D000088 8.3e-12 73.6 75 48.0
BolC2t09918H Brassica oleracea HOM05D006628 ORTHO05D000088 8.3e-12 73.6 75 48.0
BraA02t07486Z Brassica rapa HOM05D006628 ORTHO05D000088 8.3e-12 73.6 75 48.0
CARHR080680 Cardamine hirsuta HOM05D006628 ORTHO05D000088 1.1e-11 73.2 73 46.6
Thhalv10028696m.g Eutrema salsugineum HOM05D006628 ORTHO05D000088 2.4e-11 72.0 72 47.2
A06p12630 Brassica napus HOM05D006628 ORTHO05D000088 3.1e-11 71.6 82 40.2
Aa31LG5G11590 Aethionema arabicum HOM05D006628 ORTHO05D000088 4.1e-11 71.2 72 48.6
AL1G28810 Arabidopsis lyrata HOM05D006628 ORTHO05D000088 5.4e-11 70.9 71 45.1
Thhalv10009082m.g Eutrema salsugineum HOM05D006628 ORTHO05D000088 9.1e-11 70.1 70 42.9
AL7G16870 Arabidopsis lyrata HOM05D006628 ORTHO05D000088 7.7e-10 67.0 72 43.1
AT4G34400 Arabidopsis thaliana HOM05D006628 ORTHO05D000088 7.7e-10 67.0 72 43.1
ClCG01G016540 Citrullus lanatus HOM05D000395 ORTHO05D000088 1.7e-09 65.9 69 42.0
Actinidia12967 Actinidia chinensis HOM05D008110 ORTHO05D000088 2.9e-09 65.1 71 39.4
Nn6g32136 Nelumbo nucifera HOM05D000823 ORTHO05D000088 2.9e-09 65.1 68 45.6
Potri.014G036800 Populus trichocarpa HOM05D000823 ORTHO05D000088 2.9e-09 65.1 71 40.8
CSS0000969 Camellia sinensis var. sinensis HOM05D000823 ORTHO05D000088 3.8e-09 64.7 69 36.2
CSS0025372 Camellia sinensis var. sinensis HOM05D000823 ORTHO05D000088 3.8e-09 64.7 69 36.2
MELO3C007522.2 Cucumis melo HOM05D007907 ORTHO05D009079 3.8e-09 64.7 69 39.1
BcaNung06129 Brassica carinata HOM05D000765 ORTHO05D000613 8.5e-09 63.5 55 50.9
Cc00_g00220 Coffea canephora HOM05D008110 ORTHO05D000088 8.5e-09 63.5 72 33.3
Medtr1g021320 Medicago truncatula HOM05D000823 ORTHO05D000088 8.5e-09 63.5 82 35.4
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 1.1e-08 63.2 84 40.5
AL2G33170 Arabidopsis lyrata HOM05D006628 ORTHO05D000088 1.5e-08 62.8 55 49.1
Dinv39357 Davidia involucrata HOM05D000823 ORTHO05D000088 1.5e-08 62.8 82 37.8
CSS0012563 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 1.9e-08 62.4 69 36.2
AL8G36730 Arabidopsis lyrata HOM05D009243 ORTHO05D011355 3.2e-08 61.6 78 34.6
AT5G66980 Arabidopsis thaliana HOM05D000823 ORTHO05D000088 3.2e-08 61.6 74 43.2
Carub.0008s2085 Capsella rubella HOM05D009243 ORTHO05D011355 4.2e-08 61.2 75 33.3
BraA06t24424Z Brassica rapa HOM05D006628 ORTHO05D000088 5.5e-08 60.8 56 44.6
QL11p039199 Quercus lobata HOM05D000823 ORTHO05D000088 5.5e-08 60.8 70 41.4
SGA_v2.0_scaffold54G19506 Striga asiatica HOM05D008110 ORTHO05D000088 5.5e-08 60.8 73 38.4
Medtr1g021410 Medicago truncatula HOM05D000823 ORTHO05D000088 7.2e-08 60.5 83 34.9
MELO3C007521.2 Cucumis melo HOM05D000823 ORTHO05D000088 1.2e-07 59.7 69 33.3
Dinv42109 Davidia involucrata HOM05D008110 ORTHO05D000088 1.2e-07 59.7 71 38.0
QL06p043952 Quercus lobata HOM05D000395 ORTHO05D000088 1.2e-07 59.7 71 38.0
Sed0000312 Sechium edule HOM05D007907 ORTHO05D009079 1.2e-07 59.7 69 39.1
SGA_v2.0_scaffold54G19507 Striga asiatica HOM05D008110 ORTHO05D000088 1.2e-07 59.7 68 36.8
EL10Ac9g21795 Beta vulgaris HOM05D000823 ORTHO05D000088 1.6e-07 59.3 71 36.6
CSS0005810 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 1.6e-07 59.3 68 35.3
Dinv26764 Davidia involucrata HOM05D000823 ORTHO05D000088 2.1e-07 58.9 71 31.0
Sed0023289 Sechium edule HOM05D000823 ORTHO05D000088 2.1e-07 58.9 69 36.2
CANSAT25G0134 Cannabis sativa HOM05D000823 ORTHO05D000088 2.7e-07 58.5 81 33.3
Sabra14G0026500 Salix brachista HOM05D000823 ORTHO05D000088 2.7e-07 58.5 71 36.6
Cc00_g07580 Coffea canephora HOM05D000823 ORTHO05D000088 3.6e-07 58.2 72 34.7
Medtr1g021360 Medicago truncatula HOM05D000823 ORTHO05D000088 3.6e-07 58.2 82 35.4
CsaV3_6G042810 Cucumis sativus L. HOM05D000823 ORTHO05D000088 4.7e-07 57.8 69 33.3
Rhsim10G0125600 Rhododendron simsii HOM05D000823 ORTHO05D000088 4.7e-07 57.8 69 33.3
THA.LOC104807340 Tarenaya hassleriana HOM05D006628 ORTHO05D000088 4.7e-07 57.8 78 33.3
AT5G57720 Arabidopsis thaliana HOM05D006628 ORTHO05D000088 8.0e-07 57.0 73 38.4
A10p17290 Brassica napus HOM05D009243 ORTHO05D011355 1.0e-06 56.6 79 32.9
C09p52630 Brassica napus HOM05D009243 ORTHO05D011355 1.0e-06 56.6 79 32.9
Migut.B01167 Erythranthe guttata HOM05D000823 ORTHO05D000088 1.0e-06 56.6 73 37.0
EL10Ac4g09636 Beta vulgaris HOM05D000823 ORTHO05D000088 1.4e-06 56.2 55 43.6
Lalb_Chr22g0355281 Lupinus albus HOM05D000823 ORTHO05D000088 1.4e-06 56.2 80 32.5
Nn5g29405 Nelumbo nucifera HOM05D000823 ORTHO05D000088 1.4e-06 56.2 71 32.4
Zm00001eb168870 Zea mays HOM05D000823 ORTHO05D000088 1.4e-06 56.2 77 37.7
CAN.G241.1 Capsicum annuum HOM05D008110 ORTHO05D000088 1.8e-06 55.8 69 37.7
Nn6g32134 Nelumbo nucifera HOM05D000823 ORTHO05D000088 1.8e-06 55.8 66 37.9
THA.LOC104807272 Tarenaya hassleriana HOM05D006628 ORTHO05D000088 1.8e-06 55.8 59 39.0
GSVIVG01023108001 Vitis vinifera HOM05D007130 ORTHO05D002078 2.3e-06 55.5 73 35.6
Migut.M00219 Erythranthe guttata HOM05D000823 ORTHO05D000088 3.0e-06 55.1 77 35.1
Rhsim09G0072000 Rhododendron simsii HOM05D000395 ORTHO05D000088 3.0e-06 55.1 71 31.0
Ah.11g043200 Amaranthus hybridus HOM05D000823 ORTHO05D000088 4.0e-06 54.7 71 32.4
Sp2g29690 Schrenkiella parvula HOM05D000823 ORTHO05D000088 5.2e-06 54.3 70 41.4
Sp6g21790 Schrenkiella parvula HOM05D009243 ORTHO05D011355 5.2e-06 54.3 78 33.3
Migut.H00491 Erythranthe guttata HOM05D010976 ORTHO05D000088 6.8e-06 53.9 71 33.8
Lalb_Chr24g0399131 Lupinus albus HOM05D000823 ORTHO05D000088 8.8e-06 53.5 69 33.3
Nn8g40849 Nelumbo nucifera HOM05D000823 ORTHO05D000088 8.8e-06 53.5 68 35.3


User provided reference genes

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