Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 9.8e-250 866.3 427 100.0
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 4.4e-242 840.9 427 97.0
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 4.4e-242 840.9 427 97.0
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 1.1e-232 809.7 427 93.0
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 1.0e-222 776.5 427 90.6
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 3.2e-208 728.4 430 83.5
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 4.1e-208 728.0 427 82.2
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 5.6e-205 717.6 428 83.2
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 1.2e-202 709.9 427 81.7
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 2.2e-201 705.7 428 81.5
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 1.1e-192 676.8 383 87.5
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 1.9e-189 666.0 427 74.7
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 3.3e-189 665.2 425 76.2
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 2.8e-188 662.1 427 74.2
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 3.1e-187 658.7 427 75.2
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 1.2e-186 656.8 429 74.8
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 2.0e-186 656.0 427 74.5
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 2.6e-186 655.6 427 74.2
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 3.4e-186 655.2 427 73.8
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 2.9e-185 652.1 436 72.9
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 4.9e-185 651.4 429 74.1
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 1.9e-184 649.4 448 70.5
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 2.4e-184 649.0 432 73.6
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 3.2e-184 648.7 427 73.5
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 3.2e-184 648.7 429 73.4
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 5.5e-184 647.9 429 73.2
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 2.1e-183 646.0 427 72.8
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 3.5e-183 645.2 429 73.0
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 4.6e-183 644.8 429 72.7
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 7.9e-183 644.0 426 73.5
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 2.3e-182 642.5 429 72.7
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 6.7e-182 641.0 422 73.0
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 8.7e-182 640.6 427 72.4
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 1.1e-181 640.2 429 72.7
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 3.7e-180 635.2 421 73.2
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 3.7e-180 635.2 428 73.1
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 3.1e-179 632.1 429 71.3
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 7.6e-178 627.5 429 71.3
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 1.0e-177 627.1 427 71.4
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 3.8e-177 625.2 430 70.9
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 3.8e-177 625.2 427 70.3
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 8.4e-177 624.0 430 70.9
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 4.2e-176 621.7 427 70.3
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 4.2e-176 621.7 430 70.9
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 2.7e-175 619.0 427 69.8
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 2.7e-175 619.0 430 70.7
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 6.0e-175 617.8 442 69.2
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 1.3e-174 616.7 430 70.7
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 1.8e-174 616.3 448 68.3
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 8.7e-174 614.0 429 68.5
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 2.5e-173 612.5 427 70.5
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 2.5e-173 612.5 391 76.5
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 4.3e-173 611.7 451 68.5
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 5.7e-173 611.3 442 67.9
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 9.7e-173 610.5 425 68.5
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 2.8e-172 609.0 442 67.6
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 3.1e-171 605.5 430 69.5
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 4.1e-171 605.1 442 67.4
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 4.1e-171 605.1 426 69.7
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 5.9e-170 601.3 430 68.6
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 2.9e-169 599.0 420 68.8
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 6.5e-169 597.8 431 66.8
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 1.1e-168 597.0 409 75.1
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 1.1e-168 597.0 428 66.4
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 2.5e-168 595.9 479 62.2
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 3.2e-168 595.5 420 69.3
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 7.2e-168 594.3 423 67.8
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 2.1e-167 592.8 429 66.9
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 2.7e-167 592.4 419 67.1
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 4.6e-167 591.7 429 67.1
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 8.8e-166 587.4 420 67.4
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 2.2e-164 582.8 425 67.5
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 8.2e-164 580.9 426 66.9
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 1.1e-163 580.5 449 63.7
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 1.4e-163 580.1 392 70.9
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 1.2e-162 577.0 398 69.6
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 1.5e-162 576.6 415 67.0
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 1.7e-161 573.2 289 96.5
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 1.1e-160 570.5 289 96.5
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 1.4e-160 570.1 397 70.3
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 2.5e-160 569.3 289 96.2
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 1.4e-158 563.5 416 64.9
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 1.8e-158 563.1 397 69.0
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 3.3e-157 558.9 430 64.9
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 3.7e-156 555.4 419 65.4
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 3.7e-156 555.4 397 67.0
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 6.3e-156 554.7 425 62.8
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 7.0e-155 551.2 413 64.9
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 4.5e-154 548.5 417 64.7
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 6.5e-153 544.7 429 62.9
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 9.4e-152 540.8 497 57.5
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 1.0e-150 537.3 474 57.6
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 1.5e-149 533.5 428 59.3
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 1.5e-149 533.5 373 70.0
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 7.0e-147 524.6 347 73.2
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 2.5e-144 516.2 436 64.4
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 2.5e-144 516.2 456 60.5
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 6.1e-143 511.5 456 61.8
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 8.8e-142 507.7 427 60.9
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 1.4e-139 500.4 427 57.4
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 1.6e-130 470.3 428 57.5
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 1.7e-129 466.8 359 62.7
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 1.5e-128 463.8 632 45.7
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 2.8e-127 459.5 388 60.3
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 1.8e-126 456.8 434 55.8
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.3e-124 450.7 436 56.2
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 5.6e-120 435.3 404 54.2
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 1.2e-117 427.6 305 68.9
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 5.8e-117 425.2 421 48.9
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 1.6e-114 417.2 703 40.3
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 3.1e-110 402.9 435 46.4
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 4.9e-108 395.6 429 49.2
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 1.5e-101 374.0 426 48.8
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 2.3e-97 360.1 427 46.8
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 4.3e-96 355.9 434 44.5
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 1.7e-89 334.0 271 60.1
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 9.9e-85 318.2 543 40.3
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 4.2e-83 312.8 287 56.4
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 2.4e-78 297.0 332 53.6
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 4.5e-77 292.7 193 71.0
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 2.1e-74 283.9 264 54.2
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 4.3e-64 249.6 122 98.4
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 5.5e-51 206.1 119 82.4
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 3.6e-50 203.4 145 66.9
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 9.1e-46 188.7 162 60.5
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 8.2e-39 165.6 154 51.3
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 1.4e-33 148.3 291 34.0
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 1.5e-32 144.8 291 33.7
Glyma.05G007402 Glycine max HOM05D001104 ORTHO05D006624 5.3e-30 136.3 88 73.9
Psat1g219520 Pisum sativum HOM05D001104 ORTHO05D006624 5.9e-29 132.9 112 59.8
Thecc.04G111800 Theobroma cacao HOM05D001104 ORTHO05D006624 4.8e-23 113.2 85 64.7
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 7.7e-21 105.9 67 80.6
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 6.5e-20 102.8 498 24.9
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 9.4e-19 99.0 69 68.1
Cfa008566 Carpinus fangiana HOM05D001104 ORTHO05D006624 2.7e-18 97.4 60 80.0
HanXRQChr16g0517041 Helianthus annuus HOM05D001104 ORTHO05D006624 2.0e-13 81.3 66 56.1
SEGI_37884 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 1.6e-10 71.6 91 39.6
SEGI_12261 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 5.2e-09 66.6 80 46.2
Sopen07g006450 Solanum pennellii HOM05D001104 ORTHO05D006624 1.8e-06 58.2 46 54.3
TPR.G18830 Trifolium pratense HOM05D001104 ORTHO05D006624 3.2e-06 57.4 44 61.4


User provided reference genes

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