Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 0.0e+00 1577.4 808 100.0
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 0.0e+00 1375.9 824 87.3
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 0.0e+00 1365.9 824 86.7
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 0.0e+00 1365.9 824 86.7
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 0.0e+00 1328.9 827 83.6
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 0.0e+00 1325.8 823 83.5
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 0.0e+00 1317.0 819 83.0
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 0.0e+00 1311.6 818 82.6
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 0.0e+00 1291.2 817 81.6
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 0.0e+00 1276.5 808 81.3
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 0.0e+00 1165.6 839 73.7
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 0.0e+00 1162.9 829 72.0
Aa31LG11G8930 Aethionema arabicum HOM05D004953 ORTHO05D006193 0.0e+00 1093.2 798 72.4
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 5.0e-287 991.1 836 61.7
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 3.5e-280 968.4 818 60.6
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 3.8e-279 964.9 819 60.3
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 2.5e-278 962.2 817 59.7
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 3.9e-276 954.9 820 59.3
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 2.6e-275 952.2 816 59.2
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 4.4e-275 951.4 819 60.4
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 9.7e-275 950.3 828 58.2
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 3.1e-273 945.3 847 58.8
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 1.3e-271 939.9 819 58.2
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 2.9e-271 938.7 823 58.8
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 7.2e-270 934.1 816 58.6
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 4.7e-269 931.4 823 58.6
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.8e-268 929.5 816 58.5
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 6.8e-268 927.5 816 58.3
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 3.4e-267 925.2 814 58.0
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 6.3e-266 921.0 817 57.9
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 9.1e-265 917.1 813 57.8
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.2e-264 916.8 818 57.1
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 3.5e-264 915.2 818 57.0
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 4.5e-264 914.8 831 57.2
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 7.7e-264 914.1 817 56.4
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 3.2e-262 908.7 846 55.2
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 4.7e-261 904.8 814 57.1
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 9.8e-259 897.1 817 56.2
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 2.2e-258 896.0 821 54.9
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 9.1e-257 890.6 834 55.5
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 4.5e-256 888.3 828 55.6
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 5.9e-256 887.9 835 54.9
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 5.9e-256 887.9 814 56.0
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 7.7e-256 887.5 834 54.0
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 2.3e-255 885.9 824 55.8
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 3.8e-255 885.2 837 55.1
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 1.1e-254 883.6 811 55.7
QL09p045412 Quercus lobata HOM05D004953 ORTHO05D006193 1.5e-254 883.2 860 54.5
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 1.9e-254 882.9 840 54.5
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 5.5e-254 881.3 818 55.9
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 7.2e-254 880.9 829 54.8
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 9.5e-254 880.6 807 57.9
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 8.0e-253 877.5 846 54.0
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 1.8e-252 876.3 835 54.5
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 4.0e-252 875.2 832 54.7
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 2.0e-251 872.8 849 55.2
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 2.6e-251 872.5 870 52.6
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 9.8e-251 870.5 832 53.7
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 1.4e-249 866.7 816 55.1
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 6.8e-244 847.8 828 52.7
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 1.2e-243 847.0 817 53.0
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 4.4e-243 845.1 900 50.4
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 5.8e-243 844.7 817 51.8
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 7.5e-243 844.3 818 54.4
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 1.4e-241 840.1 821 52.3
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 9.2e-241 837.4 815 53.4
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 1.2e-240 837.0 817 54.0
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 3.5e-240 835.5 840 52.1
Lsat_1_v5_gn_8_98501 Lactuca sativa HOM05D004953 ORTHO05D006193 1.3e-239 833.6 849 50.3
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 5.0e-239 831.6 834 52.0
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 2.5e-238 829.3 832 51.1
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 2.5e-238 829.3 834 51.7
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 1.2e-237 827.0 835 50.8
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 1.6e-237 826.6 829 50.9
TAR365G0304 Trochodendron aralioides HOM05D004953 ORTHO05D006193 3.1e-236 822.4 692 60.0
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 4.0e-236 822.0 821 53.2
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 1.3e-234 817.0 834 51.6
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 1.0e-231 807.4 832 50.2
DCAR_004775 Daucus carota HOM05D004953 ORTHO05D006193 8.6e-231 804.3 687 60.1
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 3.1e-228 795.8 820 51.1
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 1.9e-225 786.6 858 49.4
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 2.3e-223 779.6 747 56.0
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 1.1e-220 770.8 830 49.8
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 4.9e-218 761.9 845 49.1
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 1.4e-217 760.4 830 49.8
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 1.6e-216 756.9 830 50.1
unitig_52.g16794 Utricularia gibba HOM05D004953 ORTHO05D006193 2.1e-208 729.9 823 46.8
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 9.6e-206 721.1 706 54.2
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 5.1e-199 698.7 613 59.5
HPP92_001916 Vanilla planifolia HOM05D004953 ORTHO05D006193 4.5e-179 632.5 815 42.7
CDE07G1537 Ceratophyllum demersum HOM05D004953 ORTHO05D006193 4.5e-171 605.9 704 46.0
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.8e-167 594.0 572 54.7
Lalb_Chr03g0040541 Lupinus albus HOM05D004953 ORTHO05D006193 4.0e-159 566.2 487 57.3
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 8.8e-151 538.5 554 50.2
Os01g0890900 Oryza sativa ssp. japonica HOM05D004953 ORTHO05D006193 1.2e-147 528.1 823 37.8
ATR0743G003 Amborella trichopoda HOM05D004953 ORTHO05D006193 2.8e-141 506.9 852 36.9
SEGI_29467 Sequoiadendron giganteum HOM05D004953 ORTHO05D006193 9.2e-132 475.3 827 35.2
Glyma.09G246350 Glycine max HOM05D004953 ORTHO05D006193 1.3e-125 454.9 413 54.2
Actinidia33395 Actinidia chinensis HOM05D004953 ORTHO05D006193 5.4e-116 422.9 389 55.5
SMO201G0221 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 7.3e-113 412.5 822 32.1
Zm00001eb145140 Zea mays HOM05D004953 ORTHO05D006193 1.2e-107 395.2 618 38.3
Pp3c2_410 Physcomitrium patens HOM05D004953 ORTHO05D006193 1.9e-100 371.3 829 29.3
Mapoly0032s0035 Marchantia polymorpha HOM05D004953 ORTHO05D006193 1.1e-97 362.1 854 28.2
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 1.1e-71 275.8 212 67.0
Actinidia12854 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.8e-71 275.0 258 54.7
FAN15G1853 Fragaria x ananassa HOM05D004953 ORTHO05D006193 3.0e-66 257.7 187 62.6
CANSAT01G2868 Cannabis sativa HOM05D004953 ORTHO05D006193 3.7e-64 250.8 358 41.9
Actinidia23342 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.4e-63 248.1 286 49.3
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 5.3e-63 246.9 329 43.5
FAN11G3683 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.2e-33 149.4 292 35.3
TPR.G1778 Trifolium pratense HOM05D004953 ORTHO05D019267 1.4e-31 142.5 458 27.3
FAN24G3373 Fragaria x ananassa HOM05D004953 ORTHO05D006193 5.9e-30 137.1 275 37.8
Actinidia23343 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.0e-29 136.3 143 50.3
FvH4_3g38850 Fragaria vesca HOM05D004953 ORTHO05D006193 1.0e-29 136.3 119 61.3
FvH4_2g09600 Fragaria vesca HOM05D004953 ORTHO05D006193 1.2e-27 129.4 258 38.0
Actinidia29995 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.6e-19 102.4 254 32.7
FvH4_7g13151 Fragaria vesca HOM05D004953 ORTHO05D006193 2.6e-17 95.1 70 68.6
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 3.2e-15 88.2 122 41.8
FvH4_6g36680 Fragaria vesca HOM05D004953 ORTHO05D006193 3.0e-13 81.6 59 61.0
FvH4_4g15182 Fragaria vesca HOM05D004953 ORTHO05D006193 3.6e-11 74.7 46 76.1
SMO203G0202 Selaginella moellendorffii HOM05D003498 ORTHO05D006193 3.6e-11 74.7 104 41.3
FAN14G1607 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.1e-10 73.2 61 68.9
CSS0036997 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 2.3e-10 72.0 61 55.7
CSS0040358 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 4.0e-10 71.2 61 57.4
CSS0012475 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 2.4e-07 62.0 49 49.0
CSS0023073 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 5.4e-07 60.8 51 47.1
FvH4_4g10312 Fragaria vesca HOM05D004953 ORTHO05D006193 5.4e-07 60.8 41 63.4
TPR.G3742 Trifolium pratense HOM05D004953 ORTHO05D006193 7.0e-07 60.5 36 72.2
FvH4_6g27414 Fragaria vesca HOM05D004953 ORTHO05D006193 1.2e-06 59.7 41 63.4
FAN14G2572 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.2e-06 59.7 41 63.4
FvH4_7g08382 Fragaria vesca HOM05D004953 ORTHO05D006193 1.6e-06 59.3 41 61.0
FAN14G2335 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.0e-06 58.9 50 56.0
FvH4_2g12761 Fragaria vesca HOM05D004953 ORTHO05D006193 2.7e-06 58.5 41 61.0
FvH4_6g36881 Fragaria vesca HOM05D004953 ORTHO05D006193 3.5e-06 58.2 41 61.0
FAN24G1763 Fragaria x ananassa HOM05D004953 ORTHO05D006193 7.8e-06 57.0 38 65.8


User provided reference genes

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