Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 4.3e-113 411.4 216 100.0
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 4.4e-73 278.5 153 95.4
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 6.4e-72 274.6 153 95.4
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 6.4e-72 274.6 153 95.4
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 6.4e-72 274.6 153 95.4
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 6.4e-72 274.6 153 95.4
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 6.4e-72 274.6 153 95.4
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 8.3e-72 274.2 153 93.5
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 5.2e-66 255.0 155 88.4
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 8.9e-66 254.2 154 89.0
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 2.0e-65 253.1 153 88.9
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 2.0e-65 253.1 155 87.7
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 3.4e-65 252.3 154 88.3
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 3.2e-63 245.7 149 89.3
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 4.1e-63 245.4 171 80.7
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 1.1e-60 237.3 157 81.5
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 1.6e-51 206.8 157 66.9
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 2.6e-49 199.5 143 71.3
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 3.4e-49 199.1 154 66.2
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 4.4e-49 198.7 143 68.5
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 4.4e-49 198.7 145 69.0
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 1.3e-48 197.2 143 69.2
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.3e-48 197.2 157 65.6
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 2.9e-48 196.1 157 66.2
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 3.8e-48 195.7 157 65.6
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 6.4e-48 194.9 157 65.6
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 8.4e-48 194.5 157 65.0
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 2.4e-47 193.0 157 65.0
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 4.1e-47 192.2 164 61.6
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 4.1e-47 192.2 143 67.8
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 4.1e-47 192.2 143 67.8
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 7.1e-47 191.4 158 62.0
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 7.1e-47 191.4 143 68.5
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 9.2e-47 191.0 152 65.1
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 1.2e-46 190.7 143 67.8
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 2.1e-46 189.9 157 59.9
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 2.7e-46 189.5 156 67.3
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 6.0e-46 188.3 143 65.7
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 7.8e-46 188.0 157 63.7
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 1.7e-45 186.8 143 66.4
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 1.7e-45 186.8 158 62.0
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 1.7e-45 186.8 143 66.4
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 2.3e-45 186.4 156 65.4
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 2.3e-45 186.4 158 63.9
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 3.0e-45 186.0 153 64.7
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.9e-45 185.7 136 70.6
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 3.9e-45 185.7 149 63.8
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 6.6e-45 184.9 155 63.2
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 1.1e-44 184.1 142 65.5
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 1.9e-44 183.3 140 67.1
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.5e-44 183.0 142 64.1
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 3.3e-44 182.6 159 59.7
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 4.3e-44 182.2 142 64.1
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 7.3e-44 181.4 154 61.0
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 1.2e-43 180.6 158 60.8
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 2.1e-43 179.9 142 64.1
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 2.8e-43 179.5 160 60.6
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 3.6e-43 179.1 154 62.3
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 3.6e-43 179.1 168 56.0
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 6.2e-43 178.3 149 60.4
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 6.2e-43 178.3 152 61.8
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 8.1e-43 177.9 142 63.4
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 8.1e-43 177.9 142 63.4
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 8.1e-43 177.9 142 64.8
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 1.1e-42 177.6 142 62.7
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 1.1e-42 177.6 142 64.1
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 1.1e-42 177.6 150 61.3
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.4e-42 177.2 120 79.2
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 1.4e-42 177.2 142 64.1
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 4.0e-42 175.6 142 64.1
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 4.0e-42 175.6 134 67.9
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 4.0e-42 175.6 151 58.9
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 5.2e-42 175.3 143 62.9
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 6.9e-42 174.9 158 58.9
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 6.9e-42 174.9 181 55.8
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 8.9e-42 174.5 158 59.5
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 1.2e-41 174.1 164 59.8
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 2.0e-41 173.3 140 62.9
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 2.6e-41 172.9 138 63.8
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 3.4e-41 172.6 156 59.0
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 4.4e-41 172.2 142 62.7
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 9.9e-41 171.0 140 62.1
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 9.9e-41 171.0 157 61.1
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 2.9e-40 169.5 157 61.8
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 2.9e-40 169.5 136 64.0
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 3.8e-40 169.1 155 59.4
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 3.8e-40 169.1 150 59.3
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 4.9e-40 168.7 166 55.4
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 8.4e-40 167.9 168 56.5
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 1.1e-39 167.5 150 58.7
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 1.1e-39 167.5 142 59.9
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.9e-39 166.8 143 62.9
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 3.2e-39 166.0 183 54.6
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 9.3e-39 164.5 152 60.5
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 1.2e-38 164.1 183 54.1
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.1e-38 163.3 155 59.4
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 1.9e-36 156.8 165 54.5
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 9.6e-36 154.5 153 56.9
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 9.6e-36 154.5 147 57.1
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 1.3e-35 154.1 179 50.3
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 1.3e-35 154.1 159 56.0
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 1.6e-35 153.7 155 58.1
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 1.1e-34 151.0 159 54.7
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 4.0e-34 149.1 164 51.8
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 9.0e-34 147.9 208 46.2
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.2e-33 147.5 172 50.0
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 7.6e-33 144.8 159 54.1
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 1.7e-32 143.7 172 48.8
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.4e-31 140.6 142 54.2
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.9e-31 140.2 114 64.0
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 9.3e-31 137.9 130 58.5
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 1.2e-30 137.5 191 44.5
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 4.6e-30 135.6 157 49.0
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.8e-29 133.7 138 54.3
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 2.3e-29 133.3 147 51.0
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.6e-27 125.9 100 65.0
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 1.4e-26 124.0 152 46.7
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 6.9e-26 121.7 152 44.7
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.5e-25 120.6 92 68.5
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.3e-21 106.7 165 44.2
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 2.5e-20 103.2 94 56.4
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 5.6e-20 102.1 140 42.1
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 9.0e-18 94.7 77 66.2
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 2.6e-17 93.2 152 40.1
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 3.4e-17 92.8 91 63.7
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 5.8e-17 92.0 92 53.3
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 2.9e-16 89.7 99 52.5
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 4.2e-15 85.9 149 38.3
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 1.3e-13 80.9 96 47.9
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 8.7e-13 78.2 77 55.8
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 1.9e-12 77.0 141 38.3
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 2.8e-11 73.2 66 57.6
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 1.1e-10 71.2 65 56.9
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 9.0e-10 68.2 56 60.7
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.5e-09 67.4 53 66.0
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 1.5e-09 67.4 140 33.6
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 2.6e-09 66.6 97 42.3
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 5.0e-08 62.4 79 44.3
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 1.9e-07 60.5 58 50.0
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 9.3e-07 58.2 141 31.9


User provided reference genes

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