Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g30124 Brassica carinata HOM05D007200 ORTHO05D009030 1.6e-155 552.7 281 100.0
BolC5t34842H Brassica oleracea HOM05D007200 ORTHO05D000438 4.7e-152 541.2 281 97.9
BraA05t23030Z Brassica rapa HOM05D007200 ORTHO05D009030 9.2e-148 526.9 281 95.7
BcaC05g30148 Brassica carinata HOM05D007200 ORTHO05D009030 8.1e-144 513.8 281 92.9
BcaC05g30126 Brassica carinata HOM05D007200 ORTHO05D009030 9.3e-140 500.4 281 93.2
Sp3g04270 Schrenkiella parvula HOM05D007200 ORTHO05D009030 1.7e-138 496.1 281 90.0
Thhalv10021289m.g Eutrema salsugineum HOM05D007200 ORTHO05D009030 8.7e-138 493.8 281 89.3
CARHR079750 Cardamine hirsuta HOM05D007200 ORTHO05D009030 4.0e-135 485.0 281 86.5
AL3G15960 Arabidopsis lyrata HOM05D007200 ORTHO05D009030 4.9e-133 478.0 281 85.8
Carub.0003s0469 Capsella rubella HOM05D007200 ORTHO05D009030 3.2e-132 475.3 284 85.6
AT3G05410 Arabidopsis thaliana HOM05D007200 ORTHO05D009030 1.3e-130 469.9 281 84.7
Aa31LG5G15970 Aethionema arabicum HOM05D007200 ORTHO05D009030 9.6e-129 463.8 281 83.6
THA.LOC104818708 Tarenaya hassleriana HOM05D007200 ORTHO05D009030 1.9e-116 422.9 281 76.5
VMungo0720G1786 Vigna mungo HOM05D007200 ORTHO05D009030 2.0e-102 376.3 244 73.0
Glyma.10G153100 Glycine max HOM05D007200 ORTHO05D009030 7.7e-102 374.4 255 71.0
Phvul.007G196200 Phaseolus vulgaris HOM05D007200 ORTHO05D009030 1.7e-101 373.2 246 71.5
Ciclev10002020m.g Citrus clementina HOM05D007200 ORTHO05D009030 2.9e-101 372.5 282 65.6
FvH4_6g06280 Fragaria vesca HOM05D007200 ORTHO05D009030 2.5e-100 369.4 255 70.2
Manes.08G119500 Manihot esculenta HOM05D007200 ORTHO05D009030 3.2e-100 369.0 288 65.6
FAN14G1797 Fragaria x ananassa HOM05D007200 ORTHO05D009030 9.4e-100 367.5 255 69.8
RcHm_v2.0_Chr3g0455321 Rosa chinensis HOM05D007200 ORTHO05D009030 3.6e-99 365.5 252 69.8
Lj9C128T5 Lonicera japonica HOM05D007200 ORTHO05D009030 6.1e-99 364.8 257 69.6
CANSAT54G2021 Cannabis sativa HOM05D007200 ORTHO05D009030 2.3e-98 362.8 257 70.0
Sabra05G0032400 Salix brachista HOM05D007200 ORTHO05D009030 2.3e-98 362.8 284 65.8
AUR62005175 Chenopodium quinoa HOM05D007200 ORTHO05D009030 2.0e-97 359.8 283 64.7
QL03p012758 Quercus lobata HOM05D007200 ORTHO05D009030 3.3e-97 359.0 295 62.0
AUR62000793 Chenopodium quinoa HOM05D007200 ORTHO05D009030 7.4e-97 357.8 284 64.8
Psat6g149880 Pisum sativum HOM05D007200 ORTHO05D009030 9.7e-97 357.5 247 72.1
MD12G1216700 Malus domestica HOM05D007200 ORTHO05D009030 1.3e-96 357.1 253 69.2
Medtr1g083110 Medicago truncatula HOM05D007200 ORTHO05D009030 1.7e-96 356.7 247 70.4
Haze_04164 Corylus avellana HOM05D007200 ORTHO05D009030 4.8e-96 355.1 274 63.5
GSVIVG01031113001 Vitis vinifera HOM05D007200 ORTHO05D009030 8.2e-96 354.4 271 65.3
TPR.G6036 Trifolium pratense HOM05D007200 ORTHO05D009030 1.8e-95 353.2 247 70.4
FAN09G0829 Fragaria x ananassa HOM05D007200 ORTHO05D009030 4.1e-95 352.1 255 67.5
CiPaw.07G020000 Carya illinoinensis HOM05D007200 ORTHO05D009030 5.3e-95 351.7 249 68.7
Lj9C124T9 Lonicera japonica HOM05D007200 ORTHO05D009030 6.9e-95 351.3 281 64.1
Lsat_1_v5_gn_9_87521 Lactuca sativa HOM05D007200 ORTHO05D009030 1.2e-94 350.5 284 62.3
Aqoxy5G00700 Aquilegia oxysepala HOM05D007200 ORTHO05D009030 2.0e-94 349.7 249 65.9
TWI12G0470 Tripterygium wilfordii HOM05D007200 ORTHO05D009030 2.6e-94 349.4 285 61.8
ECA236G3394 Erigeron canadensis HOM05D007200 ORTHO05D009030 3.4e-94 349.0 263 66.9
Gohir.A11G266300 Gossypium hirsutum HOM05D007200 ORTHO05D009030 4.5e-94 348.6 286 63.3
Atru.chr12.1493 Acer truncatum HOM05D007200 ORTHO05D009030 5.9e-94 348.2 290 62.8
Lalb_Chr21g0310651 Lupinus albus HOM05D007200 ORTHO05D009030 1.3e-93 347.1 277 63.2
Cfa006611 Carpinus fangiana HOM05D007200 ORTHO05D009030 1.7e-93 346.7 276 62.0
Gorai.007G298700 Gossypium raimondii HOM05D007200 ORTHO05D009030 1.7e-93 346.7 286 62.9
Sed0020284 Sechium edule HOM05D007200 ORTHO05D009030 6.5e-93 344.7 260 67.3
Gohir.D11G276600 Gossypium hirsutum HOM05D007200 ORTHO05D009030 8.5e-93 344.4 286 62.6
TAR365G0906 Trochodendron aralioides HOM05D007200 ORTHO05D009030 8.5e-93 344.4 283 60.1
TAR365G0308 Trochodendron aralioides HOM05D007200 ORTHO05D009030 1.1e-92 344.0 283 60.1
Eucgr.B01933 Eucalyptus grandis HOM05D007200 ORTHO05D009030 1.4e-92 343.6 249 66.7
COL.COLO4_10491 Corchorus olitorius HOM05D007200 ORTHO05D009030 2.5e-92 342.8 260 66.9
Prupe.6G323000 Prunus persica HOM05D007200 ORTHO05D009030 5.5e-92 341.7 265 66.0
Actinidia24645 Actinidia chinensis HOM05D007200 ORTHO05D009030 9.4e-92 340.9 292 61.6
HanXRQChr11g0339441 Helianthus annuus HOM05D007200 ORTHO05D009030 9.4e-92 340.9 265 65.7
CsaV3_2G006520 Cucumis sativus L. HOM05D007200 ORTHO05D009030 1.6e-91 340.1 276 64.9
Rhsim05G0141700 Rhododendron simsii HOM05D007200 ORTHO05D009030 1.6e-91 340.1 263 65.0
Nn3g21404 Nelumbo nucifera HOM05D007200 ORTHO05D009030 2.7e-91 339.3 280 61.1
Duzib177G0869 Durio zibethinus HOM05D007200 ORTHO05D009030 4.7e-91 338.6 297 61.6
Lj5g0005198 Lotus japonicus HOM05D007200 ORTHO05D009030 4.7e-91 338.6 247 66.4
Nitab4.5_0002420g0030 Nicotiana tabacum HOM05D007200 ORTHO05D009030 2.3e-90 336.3 249 66.7
Thecc.05G310900 Theobroma cacao HOM05D007200 ORTHO05D009030 8.8e-90 334.3 297 60.6
arahy.Tifrunner.gnm1.ann1.PH9A9F Arachis hypogaea HOM05D007200 ORTHO05D009030 3.3e-89 332.4 249 66.3
MELO3C004233.2 Cucumis melo HOM05D007200 ORTHO05D009030 4.4e-89 332.0 275 62.9
CSS0011307 Camellia sinensis var. sinensis HOM05D007200 ORTHO05D009030 5.7e-89 331.6 267 62.2
DCAR_001939 Daucus carota HOM05D007200 ORTHO05D009030 1.7e-88 330.1 245 64.5
arahy.Tifrunner.gnm1.ann1.H2XQXC Arachis hypogaea HOM05D007200 ORTHO05D009030 2.2e-88 329.7 249 65.9
PGR083G0889 Punica granatum HOM05D007200 ORTHO05D009030 4.8e-88 328.6 273 59.7
Cpa.g.sc48.76 Carica papaya HOM05D007200 ORTHO05D009030 6.3e-88 328.2 252 64.3
PGSC0003DMG400007427 Solanum tuberosum HOM05D007200 ORTHO05D009030 6.3e-88 328.2 269 62.5
Migut.O00553 Erythranthe guttata HOM05D007200 ORTHO05D009030 1.2e-86 323.9 260 62.3
Peaxi162Scf00071g00636 Petunia axillaris HOM05D007200 ORTHO05D009030 2.6e-86 322.8 270 62.2
EL10Ac4g09392 Beta vulgaris HOM05D007200 ORTHO05D009030 7.7e-86 321.2 266 62.8
Ah.04g160430 Amaranthus hybridus HOM05D007200 ORTHO05D009030 2.2e-85 319.7 290 57.6
Migut.N01991 Erythranthe guttata HOM05D007200 ORTHO05D009030 2.2e-85 319.7 260 61.5
Solyc11g008480.2 Solanum lycopersicum HOM05D007200 ORTHO05D009030 2.9e-85 319.3 271 60.5
Sopen11g004260 Solanum pennellii HOM05D007200 ORTHO05D009030 6.5e-85 318.2 260 62.3
CAN.G321.37 Capsicum annuum HOM05D007200 ORTHO05D009030 1.5e-84 317.0 249 63.5
FAN02G4393 Fragaria x ananassa HOM05D007200 ORTHO05D009030 7.2e-84 314.7 226 67.7
CDE02G3507 Ceratophyllum demersum HOM05D007200 ORTHO05D009030 1.4e-82 310.5 291 54.3
Cc02_g31060 Coffea canephora HOM05D007200 ORTHO05D009030 5.2e-82 308.5 250 62.4
Zm00001eb142170 Zea mays HOM05D007200 ORTHO05D009030 5.2e-82 308.5 259 57.5
FAN05G3823 Fragaria x ananassa HOM05D000179 ORTHO05D009030 5.7e-81 305.1 225 67.6
Nitab4.5_0009303g0010 Nicotiana tabacum HOM05D007200 ORTHO05D009030 9.7e-81 304.3 249 63.5
PSO210G0998 Papaver somniferum HOM05D007200 ORTHO05D009030 1.3e-80 303.9 259 60.2
MSTRG.27987 Avicennia marina HOM05D007200 ORTHO05D009030 4.8e-80 302.0 256 60.5
vmacro19623 Vaccinium macrocarpon HOM05D007200 ORTHO05D009030 4.8e-80 302.0 263 62.0
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 8.2e-80 301.2 249 61.0
ATR0706G032 Amborella trichopoda HOM05D007200 ORTHO05D009030 1.1e-79 300.8 261 58.6
MBI19_g12813_MAGBIO Magnolia biondii HOM05D007200 ORTHO05D009030 2.4e-79 299.7 245 61.2
CANSAT54G2778 Cannabis sativa HOM05D007200 ORTHO05D009030 4.1e-79 298.9 216 69.0
PSO832G2855 Papaver somniferum HOM05D007200 ORTHO05D009030 2.0e-78 296.6 259 59.8
SGA_v2.0_scaffold98G29315 Striga asiatica HOM05D007200 ORTHO05D009030 2.7e-78 296.2 261 57.5
ClCG02G015570 Citrullus lanatus HOM05D007200 ORTHO05D009030 7.7e-78 294.7 263 60.5
Potri.005G027100 Populus trichocarpa HOM05D007200 ORTHO05D009030 1.2e-73 280.8 223 66.4
HPP92_006928 Vanilla planifolia HOM05D000065 ORTHO05D001606 1.3e-69 267.3 241 57.3
Pp3c2_22000 Physcomitrium patens HOM05D007200 ORTHO05D009030 4.3e-60 235.7 297 43.4
AagrBONN_evm.TU.Sc2ySwM_228.2760 Anthoceros agrestis HOM05D007200 ORTHO05D009030 1.2e-59 234.2 261 48.3
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 6.8e-58 228.4 248 46.8
SMO140G0101 Selaginella moellendorffii HOM05D007200 ORTHO05D009030 2.0e-57 226.9 239 49.8
Os01g0934400 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 9.8e-57 224.6 178 60.1
Hund07085 Selenicereus undatus HOM05D007200 ORTHO05D009030 3.1e-50 203.0 171 62.6
Sc16g0008540 Simmondsia chinensis HOM05D007200 ORTHO05D009030 5.2e-50 202.2 141 67.4
C05p61820 Brassica napus HOM05D000205 ORTHO05D000438 4.9e-48 195.7 157 70.1
AUR62004827 Chenopodium quinoa HOM05D007200 ORTHO05D009030 6.6e-45 185.3 155 61.9
CBR_g32304 Chara braunii HOM05D007200 ORTHO05D009030 2.8e-43 179.9 268 38.4
SGA_v2.0_scaffold95G28806 Striga asiatica HOM05D007200 ORTHO05D009030 6.8e-42 175.3 144 63.2
Cre09.g389578 Chlamydomonas reinhardtii HOM05D007200 ORTHO05D009030 1.9e-39 167.2 255 40.4
PRCOL_00003141 Prasinoderma coloniale HOM05D007200 ORTHO05D009030 3.6e-35 152.9 251 38.6
MCO07G015 Micromonas commoda HOM05D007200 ORTHO05D009030 3.1e-34 149.8 241 37.3
Oeu012109.1 Olea europaea HOM05D007200 ORTHO05D009030 4.9e-32 142.5 104 63.5
Actinidia19786 Actinidia chinensis HOM05D007200 ORTHO05D009030 2.4e-31 140.2 107 62.6
MD04G1202900 Malus domestica HOM05D007200 ORTHO05D009030 1.1e-20 104.8 120 52.5
Os01g0934350 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 3.1e-18 96.7 75 57.3
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 5.1e-13 79.3 187 28.3
AUR62032114 Chenopodium quinoa HOM05D002933 ORTHO05D007742 3.3e-12 76.6 267 25.5
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 4.3e-12 76.3 234 23.9
AUR62039657 Chenopodium quinoa HOM05D002933 ORTHO05D007742 4.3e-12 76.3 227 26.9
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 5.6e-12 75.9 184 29.3
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 2.1e-11 73.9 226 25.7
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 2.8e-11 73.6 227 22.9
Medtr7g023290 Medicago truncatula HOM05D002933 ORTHO05D007742 3.7e-11 73.2 185 26.5
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 1.1e-10 71.6 184 27.7
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 1.1e-10 71.6 184 27.7
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 1.8e-10 70.9 184 27.7
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 1.8e-10 70.9 184 27.7
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 1.8e-10 70.9 270 23.7
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 2.4e-10 70.5 184 27.2
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 3.1e-10 70.1 184 27.2
Thhalv10010685m.g Eutrema salsugineum HOM05D002933 ORTHO05D007742 4.0e-10 69.7 184 26.6
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 4.0e-10 69.7 240 25.8
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 5.3e-10 69.3 186 26.9
Ciclev10032564m.g Citrus clementina HOM05D002933 ORTHO05D007742 6.4e-08 62.4 223 24.7
Cre12.g509050 Chlamydomonas reinhardtii HOM05D002933 ORTHO05D007742 1.9e-07 60.8 188 26.1


User provided reference genes

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