Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29780 Brassica carinata HOM05D001444 ORTHO05D019898 1.7e-28 128.6 64 100.0
BcaC03g17826 Brassica carinata HOM05D001444 ORTHO05D003766 1.7e-17 92.0 62 79.0
A02p38980 Brassica napus HOM05D001444 ORTHO05D003766 1.7e-17 92.0 62 79.0
C02p58570 Brassica napus HOM05D001444 ORTHO05D003766 1.7e-17 92.0 62 79.0
BolC2t11917H Brassica oleracea HOM05D001444 ORTHO05D003766 1.7e-17 92.0 62 79.0
BraA02t08868Z Brassica rapa HOM05D001444 ORTHO05D003766 1.7e-17 92.0 62 79.0
Cfa006700 Carpinus fangiana HOM05D001444 ORTHO05D003766 1.7e-17 92.0 62 79.0
Thhalv10003617m.g Eutrema salsugineum HOM05D001444 ORTHO05D003766 1.7e-17 92.0 62 79.0
AT3G05790 Arabidopsis thaliana HOM05D001444 ORTHO05D003766 2.3e-17 91.7 62 77.4
BcaNung03919 Brassica carinata HOM05D001444 ORTHO05D003766 2.3e-17 91.7 62 79.0
A06p37080 Brassica napus HOM05D001444 ORTHO05D003766 2.3e-17 91.7 62 79.0
BraA06t26633Z Brassica rapa HOM05D001444 ORTHO05D003766 2.3e-17 91.7 62 79.0
Aa31LG11G9790 Aethionema arabicum HOM05D001444 ORTHO05D003766 3.0e-17 91.3 62 79.0
AL6G38730 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 3.0e-17 91.3 62 79.0
AT5G26860 Arabidopsis thaliana HOM05D001444 ORTHO05D003766 3.0e-17 91.3 62 79.0
Carub.0006s2452 Capsella rubella HOM05D001444 ORTHO05D003766 3.0e-17 91.3 62 79.0
CARHR186670 Cardamine hirsuta HOM05D001444 ORTHO05D003766 3.0e-17 91.3 62 79.0
Sp2g21140 Schrenkiella parvula HOM05D001444 ORTHO05D003766 3.9e-17 90.9 62 77.4
BcaNung03668 Brassica carinata HOM05D001444 ORTHO05D003766 5.0e-17 90.5 62 79.0
Potri.005G017600 Populus trichocarpa HOM05D001444 ORTHO05D003766 5.0e-17 90.5 62 77.4
Haze_04062 Corylus avellana HOM05D001444 ORTHO05D003766 6.6e-17 90.1 62 77.4
TAR365G0568 Trochodendron aralioides HOM05D001444 ORTHO05D003766 6.6e-17 90.1 62 75.8
VMungo0720G2265 Vigna mungo HOM05D001444 ORTHO05D003766 6.6e-17 90.1 62 79.0
arahy.Tifrunner.gnm1.ann1.UJ98VB Arachis hypogaea HOM05D001444 ORTHO05D003766 8.6e-17 89.7 62 77.4
AT3G05780 Arabidopsis thaliana HOM05D001444 ORTHO05D003766 1.1e-16 89.4 62 75.8
Nitab4.5_0003894g0040 Nicotiana tabacum HOM05D001444 ORTHO05D003766 1.1e-16 89.4 62 77.4
arahy.Tifrunner.gnm1.ann1.06RU3W Arachis hypogaea HOM05D001444 ORTHO05D003766 1.5e-16 89.0 62 75.8
C07p41360 Brassica napus HOM05D001444 ORTHO05D003766 1.5e-16 89.0 62 77.4
BolC1t05667H Brassica oleracea HOM05D001444 ORTHO05D003766 1.5e-16 89.0 62 75.8
BolC7t44666H Brassica oleracea HOM05D001444 ORTHO05D003766 1.5e-16 89.0 62 77.4
BraA01t04474Z Brassica rapa HOM05D001444 ORTHO05D003766 1.5e-16 89.0 62 75.8
Psat0s3400g0080 Pisum sativum HOM05D001444 ORTHO05D003766 1.5e-16 89.0 62 77.4
AL845U10020 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 1.9e-16 88.6 62 75.8
BcaC09g47850 Brassica carinata HOM05D001444 ORTHO05D003766 1.9e-16 88.6 62 75.8
vmacro19754 Vaccinium macrocarpon HOM05D001444 ORTHO05D003766 1.9e-16 88.6 62 75.8
AL3G16520 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 2.5e-16 88.2 62 74.2
CSS0031861 Camellia sinensis var. sinensis HOM05D001444 ORTHO05D003766 2.5e-16 88.2 62 75.8
Ciclev10000120m.g Citrus clementina HOM05D001444 ORTHO05D003766 2.5e-16 88.2 62 75.8
Eucgr.L00266 Eucalyptus grandis HOM05D001444 ORTHO05D003766 2.5e-16 88.2 62 75.8
Glyma.20G097700 Glycine max HOM05D001444 ORTHO05D003766 2.5e-16 88.2 62 77.4
BraA01t04494Z Brassica rapa HOM05D001444 ORTHO05D003766 3.3e-16 87.8 62 72.6
PGR083G0370 Punica granatum HOM05D001444 ORTHO05D003766 3.3e-16 87.8 63 73.0
Sed0006327 Sechium edule HOM05D001444 ORTHO05D003766 3.3e-16 87.8 62 75.8
Atru.chr2.182 Acer truncatum HOM05D001444 ORTHO05D003766 4.3e-16 87.4 62 72.6
Duzib106G0804 Durio zibethinus HOM05D001444 ORTHO05D003766 4.3e-16 87.4 62 74.2
THA.LOC104820100 Tarenaya hassleriana HOM05D001444 ORTHO05D003766 4.3e-16 87.4 62 74.2
TPR.G2620 Trifolium pratense HOM05D001444 ORTHO05D003766 4.3e-16 87.4 62 75.8
AL3G16530 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 5.6e-16 87.0 62 74.2
Nitab4.5_0000155g0070 Nicotiana tabacum HOM05D001444 ORTHO05D003766 5.6e-16 87.0 62 75.8
Phvul.007G201200 Phaseolus vulgaris HOM05D001444 ORTHO05D003766 5.6e-16 87.0 62 75.8
Solyc10g024320.2 Solanum lycopersicum HOM05D001444 ORTHO05D003766 5.6e-16 87.0 62 75.8
Sabra13G0007500 Salix brachista HOM05D001444 ORTHO05D003766 7.3e-16 86.7 62 74.2
FAN02G3316 Fragaria x ananassa HOM05D001444 ORTHO05D003766 9.5e-16 86.3 62 74.2
FAN09G2106 Fragaria x ananassa HOM05D001444 ORTHO05D003766 9.5e-16 86.3 62 74.2
BcaB07g33552 Brassica carinata HOM05D001444 ORTHO05D003766 1.2e-15 85.9 62 71.0
BcaC08g43277 Brassica carinata HOM05D001444 ORTHO05D003766 1.2e-15 85.9 62 71.0
A06p02730 Brassica napus HOM05D001444 ORTHO05D003766 1.2e-15 85.9 62 71.0
C06p06270 Brassica napus HOM05D001444 ORTHO05D003766 1.2e-15 85.9 62 71.0
Migut.N01380 Erythranthe guttata HOM05D001444 ORTHO05D003766 1.2e-15 85.9 62 72.6
QL03p013621 Quercus lobata HOM05D001444 ORTHO05D003766 1.2e-15 85.9 62 74.2
QL03p039871 Quercus lobata HOM05D001444 ORTHO05D003766 1.2e-15 85.9 62 74.2
RcHm_v2.0_Chr3g0457021 Rosa chinensis HOM05D001444 ORTHO05D003766 1.2e-15 85.9 62 72.6
TWI56G1076 Tripterygium wilfordii HOM05D001444 ORTHO05D003766 1.2e-15 85.9 62 74.2
BolC1t05669H Brassica oleracea HOM05D001444 ORTHO05D003766 1.6e-15 85.5 62 72.6
ClCG00G002460 Citrullus lanatus HOM05D001444 ORTHO05D003766 1.6e-15 85.5 62 72.6
ClCG02G014960 Citrullus lanatus HOM05D001444 ORTHO05D003766 1.6e-15 85.5 62 72.6
MELO3C027261.2 Cucumis melo HOM05D001444 ORTHO05D003766 1.6e-15 85.5 62 72.6
CsaV3_2G007040 Cucumis sativus L. HOM05D001444 ORTHO05D003766 1.6e-15 85.5 62 72.6
Dinv24440 Davidia involucrata HOM05D001444 ORTHO05D003766 1.6e-15 85.5 62 74.2
Gohir.A11G273200 Gossypium hirsutum HOM05D001444 ORTHO05D003766 1.6e-15 85.5 62 74.2
Gohir.D11G283300 Gossypium hirsutum HOM05D001444 ORTHO05D003766 1.6e-15 85.5 62 74.2
Lalb_Chr02g0147821 Lupinus albus HOM05D001444 ORTHO05D003766 1.6e-15 85.5 62 74.2
Lalb_Chr21g0310321 Lupinus albus HOM05D001444 ORTHO05D003766 1.6e-15 85.5 62 74.2
Manes.08G111500 Manihot esculenta HOM05D001444 ORTHO05D003766 1.6e-15 85.5 62 72.6
Rhsim05G0131900 Rhododendron simsii HOM05D001444 ORTHO05D003766 1.6e-15 85.5 62 71.0
ATR0796G182 Amborella trichopoda HOM05D001444 ORTHO05D003766 2.1e-15 85.1 62 74.2
COL.COLO4_05554 Corchorus olitorius HOM05D001444 ORTHO05D003766 2.1e-15 85.1 62 72.6
Thhalv10022093m.g Eutrema salsugineum HOM05D001444 ORTHO05D003766 2.1e-15 85.1 62 71.0
Peaxi162Scf00484g00210 Petunia axillaris HOM05D001444 ORTHO05D003766 2.1e-15 85.1 62 74.2
Peaxi162Scf00484g00213 Petunia axillaris HOM05D001444 ORTHO05D003766 2.1e-15 85.1 62 74.2
Peaxi162Scf01208g00145 Petunia axillaris HOM05D001444 ORTHO05D003766 2.1e-15 85.1 62 74.2
Peaxi162Scf01871g00003 Petunia axillaris HOM05D001444 ORTHO05D003766 2.1e-15 85.1 62 74.2
BcaB07g33551 Brassica carinata HOM05D001444 ORTHO05D003766 2.8e-15 84.7 62 69.4
A06p02720 Brassica napus HOM05D001444 ORTHO05D003766 2.8e-15 84.7 62 71.0
BraA06t23480Z Brassica rapa HOM05D001444 ORTHO05D003766 2.8e-15 84.7 62 71.0
CDE05G1119 Ceratophyllum demersum HOM05D001444 ORTHO05D003766 2.8e-15 84.7 62 72.6
Dinv30892 Davidia involucrata HOM05D001444 ORTHO05D003766 2.8e-15 84.7 62 74.2
Potri.013G008900 Populus trichocarpa HOM05D001444 ORTHO05D003766 2.8e-15 84.7 62 72.6
Prupe.6G313300 Prunus persica HOM05D001444 ORTHO05D003766 2.8e-15 84.7 62 72.6
Sopen10g009280 Solanum pennellii HOM05D001444 ORTHO05D003766 2.8e-15 84.7 62 74.2
Ca_10170_v3 Cicer arietinum L. HOM05D001444 ORTHO05D003766 3.6e-15 84.3 62 74.2
FvH4_6g07420 Fragaria vesca HOM05D001444 ORTHO05D003766 3.6e-15 84.3 62 72.6
FAN05G3889 Fragaria x ananassa HOM05D001444 ORTHO05D003766 3.6e-15 84.3 62 72.6
FAN14G2853 Fragaria x ananassa HOM05D001444 ORTHO05D003766 3.6e-15 84.3 62 72.6
Glyma.10G147200 Glycine max HOM05D001444 ORTHO05D003766 3.6e-15 84.3 62 74.2
Os07g0689300 Oryza sativa ssp. japonica HOM05D001444 ORTHO05D003766 3.6e-15 84.3 62 71.0
TAR633G2402 Trochodendron aralioides HOM05D001444 ORTHO05D003766 3.6e-15 84.3 62 71.0
Duzib128G0547 Durio zibethinus HOM05D001444 ORTHO05D003766 4.7e-15 84.0 62 71.0
Gorai.007G306200 Gossypium raimondii HOM05D001444 ORTHO05D003766 4.7e-15 84.0 62 72.6
Hma1.2p1_0008F-1.1_g005610 Hydrangea macrophylla HOM05D001444 ORTHO05D003766 4.7e-15 84.0 62 72.6
Nn4g25600 Nelumbo nucifera HOM05D001444 ORTHO05D003766 4.7e-15 84.0 62 71.0
CAN.G167.13 Capsicum annuum HOM05D001444 ORTHO05D003766 6.2e-15 83.6 62 74.2
CDE11G0937 Ceratophyllum demersum HOM05D001444 ORTHO05D003766 6.2e-15 83.6 62 71.0
Gohir.D08G222800 Gossypium hirsutum HOM05D001444 ORTHO05D003766 6.2e-15 83.6 61 72.1
Gorai.004G236600 Gossypium raimondii HOM05D001444 ORTHO05D003766 6.2e-15 83.6 61 72.1
SEGI_36392 Sequoiadendron giganteum HOM05D001444 ORTHO05D003766 6.2e-15 83.6 62 72.6
TAR636G1039 Trochodendron aralioides HOM05D001444 ORTHO05D003766 6.2e-15 83.6 62 71.0
Gohir.A08G205900 Gossypium hirsutum HOM05D001444 ORTHO05D003766 8.0e-15 83.2 61 73.8
MD02G1284000 Malus domestica HOM05D001444 ORTHO05D003766 8.0e-15 83.2 62 69.4
MD07G1050000 Malus domestica HOM05D001444 ORTHO05D003766 8.0e-15 83.2 62 69.4
Medtr1g084020 Medicago truncatula HOM05D001444 ORTHO05D003766 8.0e-15 83.2 62 67.7
SalBow2G0724 Salvia bowleyana HOM05D001444 ORTHO05D003766 8.0e-15 83.2 62 69.4
Actinidia01682 Actinidia chinensis HOM05D001444 ORTHO05D003766 1.0e-14 82.8 62 71.0
MSTRG.27942 Avicennia marina HOM05D001444 ORTHO05D003766 1.0e-14 82.8 62 74.2
CANSAT54G1984 Cannabis sativa HOM05D001444 ORTHO05D003766 1.0e-14 82.8 62 69.4
CiPaw.07G029500 Carya illinoinensis HOM05D001444 ORTHO05D003766 1.0e-14 82.8 62 74.2
Lj5g0020416 Lotus japonicus HOM05D001444 ORTHO05D003766 1.0e-14 82.8 62 74.2
PSO063G2884 Papaver somniferum HOM05D001444 ORTHO05D003766 1.0e-14 82.8 62 71.0
PSO782G1742 Papaver somniferum HOM05D001444 ORTHO05D003766 1.0e-14 82.8 62 71.0
Ah.03g134540 Amaranthus hybridus HOM05D001444 ORTHO05D003766 1.4e-14 82.4 62 72.6
Aqoxy7G03321 Aquilegia oxysepala HOM05D001444 ORTHO05D003766 1.4e-14 82.4 62 69.4
EL10Ac4g09446 Beta vulgaris HOM05D001444 ORTHO05D003766 1.8e-14 82.0 62 72.6
RcHm_v2.0_Chr1g0325611 Rosa chinensis HOM05D001444 ORTHO05D003766 1.8e-14 82.0 62 67.7
Thecc.05G322700 Theobroma cacao HOM05D001444 ORTHO05D003766 1.8e-14 82.0 62 69.4
Cc02_g35000 Coffea canephora HOM05D001444 ORTHO05D003766 2.3e-14 81.6 62 71.0
FAN10G3276 Fragaria x ananassa HOM05D001444 ORTHO05D003766 2.3e-14 81.6 62 67.7
MD12G1206100 Malus domestica HOM05D001444 ORTHO05D003766 2.3e-14 81.6 62 67.7
Zm00001eb111810 Zea mays HOM05D001444 ORTHO05D003766 2.3e-14 81.6 62 69.4
Zm00001eb331350 Zea mays HOM05D001444 ORTHO05D003766 2.3e-14 81.6 62 69.4
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 3.1e-14 81.3 62 66.1
FAN06G0007 Fragaria x ananassa HOM05D001444 ORTHO05D003766 4.0e-14 80.9 62 67.7
Oeu053708.1 Olea europaea HOM05D001444 ORTHO05D003766 4.0e-14 80.9 62 69.4
Prupe.2G038600 Prunus persica HOM05D001444 ORTHO05D003766 4.0e-14 80.9 63 69.8
unitig_26.g9563 Utricularia gibba HOM05D001444 ORTHO05D003766 4.0e-14 80.9 62 71.0
C09p06210 Brassica napus HOM05D001444 ORTHO05D019898 5.2e-14 80.5 55 78.2
BolC9t53541H Brassica oleracea HOM05D001444 ORTHO05D019898 5.2e-14 80.5 55 78.2
Carub.0003s0515 Capsella rubella HOM05D001444 ORTHO05D003766 5.2e-14 80.5 62 71.0
Duzib177G0746 Durio zibethinus HOM05D001444 ORTHO05D003766 5.2e-14 80.5 61 72.1
FAN03G3407 Fragaria x ananassa HOM05D001444 ORTHO05D003766 5.2e-14 80.5 62 67.7
HanXRQChr10g0294481 Helianthus annuus HOM05D001444 ORTHO05D019898 5.2e-14 80.5 62 69.4
Nn3g21688 Nelumbo nucifera HOM05D001444 ORTHO05D003766 5.2e-14 80.5 63 71.4
GSVIVG01031236001 Vitis vinifera HOM05D001444 ORTHO05D003766 5.2e-14 80.5 62 71.0
SGA_v2.0_scaffold37G14611 Striga asiatica HOM05D001444 ORTHO05D003766 6.8e-14 80.1 60 70.0
BcaB07g33548 Brassica carinata HOM05D001444 ORTHO05D003766 8.9e-14 79.7 62 66.1
Lj5C334T7 Lonicera japonica HOM05D001444 ORTHO05D003766 8.9e-14 79.7 62 69.4
HanXRQChr16g0513821 Helianthus annuus HOM05D001444 ORTHO05D003766 1.5e-13 79.0 62 69.4
Sc06g0005760 Simmondsia chinensis HOM05D001444 ORTHO05D003766 1.5e-13 79.0 62 72.6
Lsat_1_v5_gn_5_103920 Lactuca sativa HOM05D001444 ORTHO05D003766 2.0e-13 78.6 62 69.4
MD04G1193200 Malus domestica HOM05D001444 ORTHO05D003766 2.0e-13 78.6 62 66.1
Pp3c13_13900 Physcomitrium patens HOM05D001444 ORTHO05D003766 2.0e-13 78.6 60 68.3
DCAR_005419 Daucus carota HOM05D001444 ORTHO05D003766 2.6e-13 78.2 62 69.4
SMO358G0399 Selaginella moellendorffii HOM05D001444 ORTHO05D003766 3.4e-13 77.8 62 66.1
AUR62000399 Chenopodium quinoa HOM05D001444 ORTHO05D003766 4.4e-13 77.4 62 69.4
Mapoly0002s0303 Marchantia polymorpha HOM05D001444 ORTHO05D003766 4.4e-13 77.4 62 66.1
ECA234G1965 Erigeron canadensis HOM05D001444 ORTHO05D003766 7.5e-13 76.6 62 67.7
Sp1g32080 Schrenkiella parvula HOM05D001444 ORTHO05D019898 7.5e-13 76.6 62 62.9
AUR62006755 Chenopodium quinoa HOM05D001444 ORTHO05D003766 2.9e-12 74.7 62 69.4
QL03p013575 Quercus lobata HOM05D001444 ORTHO05D003766 2.9e-12 74.7 62 66.1
QL03p039934 Quercus lobata HOM05D001444 ORTHO05D003766 2.9e-12 74.7 62 66.1
COL.COLO4_05555 Corchorus olitorius HOM05D001444 ORTHO05D003766 3.7e-12 74.3 62 64.5
CBR_g37235 Chara braunii HOM05D001444 ORTHO05D003766 4.9e-12 73.9 62 59.7
Oeu064819.1 Olea europaea HOM05D001444 ORTHO05D003766 8.3e-12 73.2 62 67.7
AagrBONN_evm.TU.Sc2ySwM_228.1077 Anthoceros agrestis HOM05D001444 ORTHO05D003766 1.6e-10 68.9 62 59.7
MCO16G463 Micromonas commoda HOM05D001444 ORTHO05D003766 7.3e-08 60.1 59 54.2
COL.COLO4_04162 Corchorus olitorius HOM05D001444 ORTHO05D019898 6.8e-06 53.5 41 63.4


User provided reference genes

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