Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29686 Brassica carinata HOM05D007321 ORTHO05D009244 5.9e-272 940.3 473 100.0
C05p58490 Brassica napus HOM05D007321 ORTHO05D009244 5.4e-249 864.0 473 92.0
BolC5t34500H Brassica oleracea HOM05D007321 ORTHO05D009244 2.0e-248 862.1 473 92.0
BraA05t22728Z Brassica rapa HOM05D007321 ORTHO05D009244 1.2e-245 852.8 476 90.5
A05p39470 Brassica napus HOM05D007321 ORTHO05D009244 2.8e-245 851.7 476 90.5
Sp3g07930 Schrenkiella parvula HOM05D007321 ORTHO05D009244 1.4e-236 822.8 480 86.9
Carub.0003s0867 Capsella rubella HOM05D007321 ORTHO05D009244 3.7e-234 814.7 477 86.4
AT3G09580 Arabidopsis thaliana HOM05D007321 ORTHO05D009244 2.0e-232 808.9 477 85.3
CARHR083990 Cardamine hirsuta HOM05D007321 ORTHO05D009244 3.5e-232 808.1 477 85.3
AL3G20750 Arabidopsis lyrata HOM05D007321 ORTHO05D009244 1.9e-230 802.4 477 85.1
Thhalv10003042m.g Eutrema salsugineum HOM05D007321 ORTHO05D009244 1.1e-220 770.0 475 82.9
Aa31LG3G2030 Aethionema arabicum HOM05D007321 ORTHO05D009244 6.9e-212 740.7 493 77.9
THA.LOC104826997 Tarenaya hassleriana HOM05D007321 ORTHO05D009244 8.7e-207 723.8 481 77.1
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 5.1e-183 644.8 428 74.8
Manes.16G135300 Manihot esculenta HOM05D007321 ORTHO05D009244 2.8e-181 639.0 443 70.9
Duzib052G0820 Durio zibethinus HOM05D007321 ORTHO05D009244 6.3e-181 637.9 480 67.5
Atru.chr6.902 Acer truncatum HOM05D007321 ORTHO05D009244 1.2e-179 633.6 479 67.8
Potri.001G344800 Populus trichocarpa HOM05D007321 ORTHO05D009244 2.6e-179 632.5 475 66.5
Medtr4g094295 Medicago truncatula HOM05D007321 ORTHO05D009244 4.5e-179 631.7 471 67.1
Sabra16G0223900 Salix brachista HOM05D007321 ORTHO05D009244 5.9e-179 631.3 475 66.9
Thecc.02G143600 Theobroma cacao HOM05D007321 ORTHO05D009244 2.2e-178 629.4 480 67.9
CiPaw.05G039000 Carya illinoinensis HOM05D007321 ORTHO05D009244 2.5e-177 625.9 452 68.6
Cfa005577 Carpinus fangiana HOM05D007321 ORTHO05D009244 9.3e-177 624.0 473 66.0
MD03G1054600 Malus domestica HOM05D007321 ORTHO05D009244 1.6e-176 623.2 428 70.3
Rhsim05G0110900 Rhododendron simsii HOM05D007321 ORTHO05D009244 2.1e-176 622.9 493 65.1
Glyma.05G120300 Glycine max HOM05D007321 ORTHO05D009244 1.3e-175 620.2 474 65.6
Psat1g188000 Pisum sativum HOM05D007321 ORTHO05D009244 1.8e-175 619.8 467 66.0
Actinidia28071 Actinidia chinensis HOM05D007321 ORTHO05D009244 1.5e-174 616.7 423 72.3
Gorai.012G140200 Gossypium raimondii HOM05D007321 ORTHO05D009244 2.5e-174 615.9 483 65.6
Lsat_1_v5_gn_7_80180 Lactuca sativa HOM05D007321 ORTHO05D009244 2.5e-174 615.9 432 70.8
Dinv19324 Davidia involucrata HOM05D007321 ORTHO05D009244 5.7e-174 614.8 471 66.9
Gohir.D04G153300 Gossypium hirsutum HOM05D007321 ORTHO05D009244 7.4e-174 614.4 483 65.6
PGR142G0984 Punica granatum HOM05D007321 ORTHO05D009244 7.4e-174 614.4 466 66.7
Phvul.002G206500 Phaseolus vulgaris HOM05D007321 ORTHO05D009244 1.3e-173 613.6 469 67.2
TWI59G1034 Tripterygium wilfordii HOM05D007321 ORTHO05D009244 1.3e-173 613.6 471 64.3
Gohir.A04G112300 Gossypium hirsutum HOM05D007321 ORTHO05D009244 2.2e-173 612.8 486 65.4
VMungo0251G3312 Vigna mungo HOM05D007321 ORTHO05D009244 2.2e-173 612.8 470 67.4
GSVIVG01029706001 Vitis vinifera HOM05D007321 ORTHO05D009244 3.1e-172 609.0 472 65.0
Lj4g0025169 Lotus japonicus HOM05D007321 ORTHO05D009244 4.1e-172 608.6 476 64.7
Ciclev10004047m.g Citrus clementina HOM05D007321 ORTHO05D009244 2.6e-171 605.9 441 68.3
EL10Ac8g19338 Beta vulgaris HOM05D007321 ORTHO05D009244 3.4e-171 605.5 447 67.3
Eucgr.I02693 Eucalyptus grandis HOM05D007321 ORTHO05D009244 3.4e-171 605.5 474 65.2
Nn1g05198 Nelumbo nucifera HOM05D007321 ORTHO05D009244 5.9e-171 604.7 442 68.8
RcHm_v2.0_Chr5g0072531 Rosa chinensis HOM05D007321 ORTHO05D009244 5.9e-171 604.7 473 64.7
Ah.14g085390 Amaranthus hybridus HOM05D007321 ORTHO05D009244 2.2e-170 602.8 439 68.3
ClCG10G015890 Citrullus lanatus HOM05D007321 ORTHO05D009244 2.9e-170 602.4 429 68.1
QL11p019400 Quercus lobata HOM05D007321 ORTHO05D009244 2.9e-170 602.4 440 66.8
CANSAT80G1420 Cannabis sativa HOM05D007321 ORTHO05D009244 8.5e-170 600.9 444 68.5
FAN21G2259 Fragaria x ananassa HOM05D007321 ORTHO05D009244 8.5e-170 600.9 430 69.1
FAN25G3421 Fragaria x ananassa HOM05D007321 ORTHO05D009244 1.1e-169 600.5 455 65.9
ECA236G2671 Erigeron canadensis HOM05D007321 ORTHO05D009244 2.5e-169 599.4 444 66.9
FvH4_3g40270 Fragaria vesca HOM05D007321 ORTHO05D009244 3.2e-169 599.0 473 63.8
Sopen02g028190 Solanum pennellii HOM05D007321 ORTHO05D009244 4.2e-169 598.6 478 63.6
Lj5P243T60 Lonicera japonica HOM05D007321 ORTHO05D009244 7.2e-169 597.8 469 65.9
Solyc02g083410.4 Solanum lycopersicum HOM05D007321 ORTHO05D009244 7.2e-169 597.8 478 63.4
FAN11G3563 Fragaria x ananassa HOM05D007321 ORTHO05D009244 1.2e-168 597.0 430 68.4
FAN16G2899 Fragaria x ananassa HOM05D007321 ORTHO05D009244 1.2e-168 597.0 430 68.4
MELO3C009790.2 Cucumis melo HOM05D007321 ORTHO05D009244 2.1e-168 596.3 472 62.5
PGSC0003DMG400003660 Solanum tuberosum HOM05D007321 ORTHO05D009244 3.6e-168 595.5 473 64.3
Prupe.6G043200 Prunus persica HOM05D007321 ORTHO05D009244 1.0e-167 594.0 429 67.6
HanXRQChr11g0337111 Helianthus annuus HOM05D007321 ORTHO05D009244 1.4e-167 593.6 439 67.7
CsaV3_3G040590 Cucumis sativus L. HOM05D007321 ORTHO05D009244 3.9e-167 592.0 427 66.3
Oeu037200.1 Olea europaea HOM05D007321 ORTHO05D009244 5.1e-167 591.7 430 68.6
Aqoxy6G00494 Aquilegia oxysepala HOM05D007321 ORTHO05D009244 2.0e-166 589.7 469 64.4
Cc02_g21870 Coffea canephora HOM05D007321 ORTHO05D009244 3.3e-166 589.0 442 66.3
Nitab4.5_0007385g0020 Nicotiana tabacum HOM05D007321 ORTHO05D009244 2.8e-165 585.9 483 61.1
Sc14g0002750 Simmondsia chinensis HOM05D007321 ORTHO05D009244 1.1e-164 583.9 464 61.9
Nitab4.5_0002105g0030 Nicotiana tabacum HOM05D007321 ORTHO05D009244 2.4e-164 582.8 485 61.2
DCAR_021840 Daucus carota HOM05D000446 ORTHO05D000321 6.9e-164 581.3 429 68.1
Peaxi162Scf00328g00127 Petunia axillaris HOM05D007321 ORTHO05D009244 1.5e-163 580.1 481 62.4
Sed0000618 Sechium edule HOM05D007321 ORTHO05D009244 7.7e-163 577.8 429 65.7
Migut.B00640 Erythranthe guttata HOM05D007321 ORTHO05D009244 1.3e-162 577.0 438 65.1
SGA_v2.0_scaffold332G48942 Striga asiatica HOM05D007321 ORTHO05D009244 5.0e-162 575.1 478 61.1
PSO541G5651 Papaver somniferum HOM05D007321 ORTHO05D009244 1.9e-161 573.2 454 63.4
MSTRG.16564 Avicennia marina HOM05D007321 ORTHO05D009244 3.2e-161 572.4 425 68.2
AUR62027387 Chenopodium quinoa HOM05D007321 ORTHO05D009244 2.3e-159 566.2 406 67.2
Lalb_Chr07g0189441 Lupinus albus HOM05D007321 ORTHO05D009244 2.3e-159 566.2 471 62.4
CSS0020188 Camellia sinensis var. sinensis HOM05D007321 ORTHO05D009244 3.0e-159 565.8 477 64.6
SalBow5G3411 Salvia bowleyana HOM05D007321 ORTHO05D009244 1.1e-158 563.9 474 63.1
MBI05_g36588_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 1.4e-156 557.0 481 61.1
PSO675G7953 Papaver somniferum HOM05D007321 ORTHO05D009244 9.1e-156 554.3 468 60.0
SEGI_02418 Sequoiadendron giganteum HOM05D007321 ORTHO05D009244 1.8e-143 513.5 481 55.1
ATR0580G200 Amborella trichopoda HOM05D007321 ORTHO05D009244 8.3e-141 504.6 436 58.3
Mapoly0005s0009 Marchantia polymorpha HOM05D007321 ORTHO05D009244 1.4e-140 503.8 466 57.7
Pp3c2_19910 Physcomitrium patens HOM05D007321 ORTHO05D009244 9.1e-140 501.1 429 59.9
CDE06G0306 Ceratophyllum demersum HOM05D007321 ORTHO05D009244 2.8e-136 489.6 473 55.6
TPR.G10452 Trifolium pratense HOM05D007321 ORTHO05D009244 1.7e-133 480.3 371 63.6
Ca_18334_v3 Cicer arietinum L. HOM05D005078 ORTHO05D007574 4.9e-133 478.8 388 62.6
SMO116G0156 Selaginella moellendorffii HOM05D007321 ORTHO05D009244 1.8e-132 476.9 428 57.2
Zm00001eb328010 Zea mays HOM05D007321 ORTHO05D009244 5.6e-129 465.3 467 55.2
Cre12.g560900 Chlamydomonas reinhardtii HOM05D007321 ORTHO05D009244 2.3e-119 433.3 469 51.6
AagrBONN_evm.TU.Sc2ySwM_344.1849 Anthoceros agrestis HOM05D007321 ORTHO05D009244 5.8e-118 428.7 436 50.5
Os07g0626800 Oryza sativa ssp. japonica HOM05D007321 ORTHO05D009244 3.0e-114 416.4 406 54.9
CBR_g49724 Chara braunii HOM05D007321 ORTHO05D009244 5.4e-108 395.6 452 47.1
TAR381G1665 Trochodendron aralioides HOM05D007321 ORTHO05D009244 9.2e-108 394.8 334 63.8
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 1.5e-102 377.5 423 47.5
Cpa.g.sc52.12 Carica papaya HOM05D007321 ORTHO05D009244 9.9e-102 374.8 264 68.2
MCO04G135 Micromonas commoda HOM05D007321 ORTHO05D009244 3.2e-100 369.8 442 46.8
CAN.G890.33 Capsicum annuum HOM05D007321 ORTHO05D009244 3.4e-86 323.2 487 40.7
MBI05_g44827_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 1.1e-79 301.6 288 56.2
AagrBONN_evm.TU.Sc2ySwM_344.1850 Anthoceros agrestis HOM05D007321 ORTHO05D009244 4.2e-68 263.1 220 59.1
unitig_8.g3471 Utricularia gibba HOM05D007321 ORTHO05D009244 2.8e-64 250.4 174 74.1
AUR62031301 Chenopodium quinoa HOM05D007321 ORTHO05D009244 5.9e-54 216.1 142 70.4
unitig_8.g3470 Utricularia gibba HOM05D007321 ORTHO05D009244 2.1e-51 207.6 148 61.5
MBI05_g44826_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 4.5e-38 163.3 117 66.7
HPP92_016846 Vanilla planifolia HOM05D007321 ORTHO05D009244 5.5e-28 129.8 123 56.1
TAR381G1585 Trochodendron aralioides HOM05D007321 ORTHO05D009244 4.1e-23 113.6 86 65.1
TAR371G0365 Trochodendron aralioides HOM05D002360 ORTHO05D006971 1.6e-11 75.1 485 22.1
Haze_11694 Corylus avellana HOM05D002360 ORTHO05D006971 2.8e-11 74.3 485 22.3
Lalb_Chr23g0278241 Lupinus albus HOM05D002360 ORTHO05D006971 2.8e-11 74.3 471 22.5
Sopen03g041530 Solanum pennellii HOM05D002360 ORTHO05D006971 1.8e-10 71.6 497 21.5
Solyc03g123760.3 Solanum lycopersicum HOM05D002360 ORTHO05D006971 4.0e-10 70.5 497 21.3
Ah.15g094770 Amaranthus hybridus HOM05D002360 ORTHO05D006971 6.8e-10 69.7 484 21.5
PSO135G0108 Papaver somniferum HOM05D002360 ORTHO05D006971 1.2e-09 68.9 473 21.8
Nn3g19797 Nelumbo nucifera HOM05D007321 ORTHO05D009244 7.5e-09 66.2 58 62.1
AUR62001382 Chenopodium quinoa HOM05D002360 ORTHO05D006971 4.9e-08 63.5 480 21.9
BraA10t44490Z Brassica rapa HOM05D007163 ORTHO05D009213 2.4e-07 61.2 175 27.4
BcaB08g36967 Brassica carinata HOM05D007163 ORTHO05D009213 4.1e-07 60.5 173 30.6
AT5G14220 Arabidopsis thaliana HOM05D007163 ORTHO05D009213 5.4e-07 60.1 173 31.2
C09p62940 Brassica napus HOM05D007163 ORTHO05D009213 5.4e-07 60.1 173 30.6
BolC9t59131H Brassica oleracea HOM05D007163 ORTHO05D009213 5.4e-07 60.1 173 30.6
PRCOL_00005990 Prasinoderma coloniale HOM05D001254 ORTHO05D001386 5.4e-07 60.1 253 25.3
AL6G24890 Arabidopsis lyrata HOM05D007163 ORTHO05D009213 7.0e-07 59.7 218 27.5
BcaC04g19052 Brassica carinata HOM05D007163 ORTHO05D009213 7.0e-07 59.7 173 30.6
Aa31LG11G15010 Aethionema arabicum HOM05D007163 ORTHO05D009213 9.2e-07 59.3 173 30.1
A10p24250 Brassica napus HOM05D007163 ORTHO05D009213 9.2e-07 59.3 173 30.1
Ca_08364_v3 Cicer arietinum L. HOM05D007163 ORTHO05D009213 2.0e-06 58.2 187 26.7
Sp6g29810 Schrenkiella parvula HOM05D007163 ORTHO05D009213 2.0e-06 58.2 190 28.9
Carub.0006s1242 Capsella rubella HOM05D007163 ORTHO05D009213 2.7e-06 57.8 217 27.6
CARHR199120 Cardamine hirsuta HOM05D007163 ORTHO05D009213 3.5e-06 57.4 173 28.3
Pp3c1_4180 Physcomitrium patens HOM05D007163 ORTHO05D009213 6.0e-06 56.6 165 27.9
Hund03067 Selenicereus undatus HOM05D001254 ORTHO05D001386 6.0e-06 56.6 112 33.9
Cpa.g.sc50.126 Carica papaya HOM05D000461 ORTHO05D001840 7.8e-06 56.2 72 48.6
Psat5g194080 Pisum sativum HOM05D000461 ORTHO05D001840 7.8e-06 56.2 59 47.5


User provided reference genes

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