Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1694.9 923 100.0
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1540.4 943 86.6
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1533.1 939 88.9
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1515.0 943 84.8
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1509.6 939 85.3
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1506.5 943 85.0
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1492.2 944 83.9
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1488.4 943 82.9
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1486.9 943 82.9
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1486.1 962 82.6
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1470.3 946 82.6
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1467.6 941 82.6
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1464.1 943 82.3
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1444.1 950 81.4
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1380.5 953 77.6
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1349.7 949 76.1
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1174.5 901 69.8
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1171.8 943 66.7
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1168.7 893 69.7
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1164.8 897 69.6
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1164.1 893 69.7
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1164.1 907 68.6
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1157.5 900 69.1
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1155.6 902 69.1
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1154.8 893 68.8
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1154.0 899 69.3
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1153.7 902 69.1
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1151.0 903 68.3
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1150.2 897 68.7
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1150.2 900 68.4
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1148.7 912 68.2
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1146.7 904 68.5
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1143.3 893 68.2
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1141.7 897 68.5
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1140.2 895 70.8
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1139.8 902 67.5
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1138.6 896 71.4
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1137.1 909 67.9
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1135.9 897 67.4
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1135.6 932 68.5
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1134.8 902 72.3
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1134.8 893 68.0
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1134.8 948 64.8
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1130.2 903 67.4
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1130.2 897 67.0
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1127.9 892 67.9
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1124.4 898 66.1
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1124.0 899 67.3
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1121.3 903 66.9
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1119.8 897 66.0
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1119.8 907 66.2
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1118.2 894 67.0
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1117.4 899 67.4
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1115.5 894 66.7
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1112.8 912 65.5
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1111.3 897 66.2
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1109.4 900 66.8
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1108.6 902 66.0
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1108.6 895 66.0
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1106.3 895 65.8
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1105.1 895 65.7
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1103.2 892 66.8
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1101.7 943 63.5
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1101.7 895 69.5
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1100.9 924 64.5
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1097.0 943 63.5
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1095.1 911 65.8
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1095.1 892 65.5
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1094.0 925 67.9
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1093.2 895 69.3
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1092.4 910 68.5
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1092.0 896 68.6
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1091.3 904 63.6
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1091.3 910 68.4
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1089.7 910 68.4
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1088.2 896 66.9
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1086.6 896 65.0
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1083.6 901 65.0
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1082.8 907 64.6
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1081.2 896 68.9
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1081.2 895 68.6
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1081.2 895 64.4
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1078.5 897 68.3
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1077.8 899 65.2
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1076.6 899 64.8
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 1.3e-311 1072.8 903 64.0
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 4.4e-311 1071.2 901 64.4
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 6.3e-310 1067.4 897 68.1
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 6.3e-310 1067.4 895 63.0
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 6.3e-310 1067.4 890 67.4
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 6.9e-309 1063.9 921 64.0
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 1.2e-308 1063.1 901 65.4
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 2.6e-308 1062.0 895 64.0
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 1.3e-307 1059.7 897 64.3
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 2.2e-307 1058.9 924 65.8
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 2.3e-304 1048.9 896 65.6
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 2.5e-303 1045.4 899 67.6
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 1.3e-299 1033.1 890 63.3
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 2.5e-298 1028.9 955 64.8
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 4.2e-298 1028.1 988 59.9
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 3.3e-295 1018.5 831 64.5
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 8.2e-294 1013.8 892 60.1
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 1.1e-290 1003.4 900 62.2
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.9e-290 1002.7 869 62.4
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 2.5e-290 1002.3 948 58.1
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 2.5e-290 1002.3 890 61.5
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 3.2e-290 1001.9 930 58.5
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 5.5e-290 1001.1 900 62.0
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 4.1e-285 984.9 894 60.7
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 2.0e-284 982.6 859 60.5
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 2.4e-269 932.6 898 57.6
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 1.5e-263 913.3 897 58.8
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 6.3e-262 907.9 786 61.2
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 1.2e-257 893.6 788 61.8
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 2.6e-255 885.9 730 68.8
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 7.5e-255 884.4 776 62.6
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 1.9e-250 869.8 595 72.9
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 2.3e-248 862.8 896 51.6
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 1.2e-247 860.5 964 54.0
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 3.0e-243 845.9 505 80.2
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 4.3e-242 842.0 898 51.8
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 1.9e-237 826.6 904 54.9
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 9.5e-234 814.3 748 59.5
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 8.9e-232 807.7 893 52.4
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 5.0e-174 615.9 691 51.4
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 9.1e-168 595.1 371 77.4
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.6e-167 593.6 384 75.5
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 1.0e-163 581.6 352 80.4
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.1e-160 570.1 341 80.1
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 3.2e-157 560.1 598 55.4
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.6e-156 556.6 360 75.3
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 8.3e-145 518.8 452 62.4
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 4.4e-138 496.5 585 53.8
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 1.3e-129 468.4 905 36.0
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 1.8e-128 464.5 953 38.2
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 2.7e-127 460.7 705 40.6
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 4.6e-119 433.3 292 77.4
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 5.0e-118 429.9 305 69.5
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 4.2e-96 357.1 996 30.0
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 7.1e-96 356.3 500 50.2
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 5.1e-86 323.6 582 40.7
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 2.4e-80 304.7 602 38.2
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 6.9e-67 260.0 165 75.8
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.2e-55 222.6 377 46.9
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 1.1e-51 209.5 147 85.0
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 9.7e-45 186.4 325 37.8
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 1.4e-43 182.6 104 83.7
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.7e-36 159.1 107 72.0
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 6.3e-28 130.6 107 60.7
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 8.9e-22 110.2 64 78.1
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 4.5e-18 97.8 77 61.0
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 5.0e-17 94.4 61 70.5
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 1.1e-11 76.6 72 51.4
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 5.4e-11 74.3 45 73.3
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 1.2e-10 73.2 37 89.2
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 3.5e-10 71.6 53 69.8
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 1.3e-09 69.7 66 50.0
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 6.6e-09 67.4 58 56.9
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 2.5e-08 65.5 97 54.6
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 5.6e-08 64.3 52 61.5
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 1.2e-07 63.2 40 67.5
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 1.4e-06 59.7 47 61.7


User provided reference genes

Program Settings